RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 ROBO1Q9Y6N7 1651 aa15.51■□□□□ 0.07
VPS35-210ENST00000568784 RASA4BC9J798 803 aa15.51■□□□□ 0.07
VPS35-210ENST00000568784 RASA4O43374 803 aa15.51■□□□□ 0.07
VPS35-210ENST00000568784 SPATA21Q7Z572 469 aa15.51■□□□□ 0.07
VPS35-210ENST00000568784 RPTORQ8N122 1335 aa15.51■□□□□ 0.07
VPS35-210ENST00000568784 FBF1Q8TES7 1133 aa15.51■□□□□ 0.07
VPS35-210ENST00000568784 AGAP11Q8TF27 550 aa15.51■□□□□ 0.07
VPS35-210ENST00000568784 CPA5Q8WXQ8 436 aa15.51■□□□□ 0.07
VPS35-210ENST00000568784 TLCD1Q96CP7 247 aa15.51■□□□□ 0.07
VPS35-210ENST00000568784 TRIM7Q9C029 511 aa15.51■□□□□ 0.07
VPS35-210ENST00000568784 COA1Q9GZY4 146 aa15.51■□□□□ 0.07
VPS35-210ENST00000568784 ZDHHC18Q9NUE0 388 aa15.51■□□□□ 0.07
VPS35-210ENST00000568784 AGAP1Q9UPQ3 857 aa15.51■□□□□ 0.07
VPS35-210ENST00000568784 GAKO14976 1311 aa15.51■□□□□ 0.07
VPS35-210ENST00000568784 ATXN2Q99700 1313 aaKnown RBP15.51■□□□□ 0.07
VPS35-210ENST00000568784 VCAM1P19320 739 aa15.51■□□□□ 0.07
VPS35-210ENST00000568784 CHKAP35790 457 aa15.51■□□□□ 0.07
VPS35-210ENST00000568784 ALDH5A1P51649 535 aaPredicted RBP15.51■□□□□ 0.07
VPS35-210ENST00000568784 STAT2P52630 851 aa15.51■□□□□ 0.07
VPS35-210ENST00000568784 ITGA8P53708 1063 aa15.51■□□□□ 0.07
VPS35-210ENST00000568784 SPIRE1Q08AE8 756 aa15.51■□□□□ 0.07
VPS35-210ENST00000568784 EXOC3L1Q86VI1 746 aa15.51■□□□□ 0.07
VPS35-210ENST00000568784 FAM228AQ86W67 206 aa15.51■□□□□ 0.07
VPS35-210ENST00000568784 EIF1ADQ8N9N8 165 aaKnown RBP15.51■□□□□ 0.07
VPS35-210ENST00000568784 CHST7Q9NS84 486 aa15.51■□□□□ 0.07
VPS35-210ENST00000568784 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.51■□□□□ 0.073e-9■□□□□ 10.8
VPS35-210ENST00000568784 PI4K2BG5E9Z4 385 aa15.5■□□□□ 0.07
VPS35-210ENST00000568784 GOLGA8SH3BPF8 625 aa15.5■□□□□ 0.07
VPS35-210ENST00000568784 GOLGA8MH3BSY2 632 aa15.5■□□□□ 0.07
VPS35-210ENST00000568784 IPO5O00410 1097 aaKnown RBP15.5■□□□□ 0.07
VPS35-210ENST00000568784 UPP2O95045 317 aa15.5■□□□□ 0.07
VPS35-210ENST00000568784 HSPA6P17066 643 aa15.5■□□□□ 0.07
VPS35-210ENST00000568784 CTNNA2P26232 953 aa15.5■□□□□ 0.07
VPS35-210ENST00000568784 ATP5DP30049 168 aa15.5■□□□□ 0.07
VPS35-210ENST00000568784 PCK1P35558 622 aa15.5■□□□□ 0.07
VPS35-210ENST00000568784 SREBF1P36956 1147 aa15.5■□□□□ 0.07
VPS35-210ENST00000568784 PPATQ06203 517 aa15.5■□□□□ 0.07
VPS35-210ENST00000568784 XKR9Q5GH70 373 aa15.5■□□□□ 0.07
VPS35-210ENST00000568784 MEX3CQ5U5Q3 659 aaKnown RBP15.5■□□□□ 0.07
VPS35-210ENST00000568784 XXYLT1Q8NBI6 393 aa15.5■□□□□ 0.07
VPS35-210ENST00000568784 MYBL1P10243 752 aa15.5■□□□□ 0.07
VPS35-210ENST00000568784 MMP13P45452 471 aa15.5■□□□□ 0.07
VPS35-210ENST00000568784 ZNF131P52739 623 aa15.5■□□□□ 0.07
VPS35-210ENST00000568784 MIGA2Q7L4E1 593 aa15.5■□□□□ 0.07
VPS35-210ENST00000568784 EPM2AIP1Q7L775 607 aaPredicted RBP15.5■□□□□ 0.07
VPS35-210ENST00000568784 CROCCP2Q86T23 111 aa15.5■□□□□ 0.07
VPS35-210ENST00000568784 NOP9Q86U38 636 aaKnown RBP15.5■□□□□ 0.07
VPS35-210ENST00000568784 C1orf131Q8NDD1 294 aaKnown RBP15.5■□□□□ 0.07
VPS35-210ENST00000568784 WDR18Q9BV38 432 aa15.5■□□□□ 0.07
VPS35-210ENST00000568784 NOP53Q9NZM5 478 aaKnown RBP15.5■□□□□ 0.07
VPS35-210ENST00000568784 MCM8Q9UJA3 840 aa15.5■□□□□ 0.07
VPS35-210ENST00000568784 PFASO15067 1338 aa15.5■□□□□ 0.07
VPS35-210ENST00000568784 RTN2O75298 545 aa15.5■□□□□ 0.07
VPS35-210ENST00000568784 PIAS1O75925 651 aa15.5■□□□□ 0.07
VPS35-210ENST00000568784 GSCP56915 257 aaPredicted RBP15.5■□□□□ 0.07
VPS35-210ENST00000568784 CNGA2Q16280 664 aa15.5■□□□□ 0.07
VPS35-210ENST00000568784 FMNL3Q8IVF7 1028 aa15.5■□□□□ 0.07
VPS35-210ENST00000568784 C4orf33Q8N1A6 199 aa15.5■□□□□ 0.07
VPS35-210ENST00000568784 PGM2Q96G03 612 aa15.5■□□□□ 0.07
VPS35-210ENST00000568784 FBXO28Q9NVF7 368 aa15.5■□□□□ 0.07
VPS35-210ENST00000568784 GRHL1Q9NZI5 618 aa15.5■□□□□ 0.07
VPS35-210ENST00000568784 TMOD2Q9NZR1 351 aa15.5■□□□□ 0.07
VPS35-210ENST00000568784 RARGP13631 454 aa15.49■□□□□ 0.07
VPS35-210ENST00000568784 CBWD2Q8IUF1 395 aa15.49■□□□□ 0.07
VPS35-210ENST00000568784 C3orf20Q8ND61 904 aa15.49■□□□□ 0.07
VPS35-210ENST00000568784 SPDL1Q96EA4 605 aa15.49■□□□□ 0.07
VPS35-210ENST00000568784 FAM163AQ96GL9 167 aaPredicted RBP15.49■□□□□ 0.07
VPS35-210ENST00000568784 PCDHB18PQ96TA0 734 aa15.49■□□□□ 0.07
VPS35-210ENST00000568784 UNC45AQ9H3U1 944 aa15.49■□□□□ 0.07
VPS35-210ENST00000568784 EHMT1Q9H9B1 1298 aa15.49■□□□□ 0.07
VPS35-210ENST00000568784 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.49■□□□□ 0.07
VPS35-210ENST00000568784 OLFML3Q9NRN5 406 aa15.49■□□□□ 0.07
VPS35-210ENST00000568784 HSPBP1Q9NZL4 362 aa15.49■□□□□ 0.07
VPS35-210ENST00000568784 ZNF148Q9UQR1 794 aa15.49■□□□□ 0.07
VPS35-210ENST00000568784 USP20Q9Y2K6 914 aa15.49■□□□□ 0.07
VPS35-210ENST00000568784 NQO1P15559 274 aaKnown RBP15.49■□□□□ 0.07
VPS35-210ENST00000568784 CD58P19256 250 aa15.49■□□□□ 0.07
VPS35-210ENST00000568784 DNAJC3Q13217 504 aa15.49■□□□□ 0.07
VPS35-210ENST00000568784 XRCC4Q13426 336 aa15.49■□□□□ 0.07
VPS35-210ENST00000568784 RASA3Q14644 834 aa15.49■□□□□ 0.07
VPS35-210ENST00000568784 RC3H1Q5TC82 1133 aaKnown RBP15.49■□□□□ 0.07
VPS35-210ENST00000568784 C1orf186Q6ZWK4 172 aa15.49■□□□□ 0.07
VPS35-210ENST00000568784 COL23A1Q86Y22 540 aaPredicted RBP15.49■□□□□ 0.07
VPS35-210ENST00000568784 ACER1Q8TDN7 264 aa15.49■□□□□ 0.07
VPS35-210ENST00000568784 POMGNT1Q8WZA1 660 aa15.49■□□□□ 0.07
VPS35-210ENST00000568784 P3H4Q92791 437 aa15.49■□□□□ 0.07
VPS35-210ENST00000568784 KIFAP3Q92845 792 aa15.49■□□□□ 0.07
VPS35-210ENST00000568784 NT5C1BQ96P26 610 aa15.49■□□□□ 0.07
VPS35-210ENST00000568784 DNAJC18Q9H819 358 aa15.49■□□□□ 0.07
VPS35-210ENST00000568784 GGA2Q9UJY4 613 aa15.49■□□□□ 0.07
VPS35-210ENST00000568784 TBX3O15119 743 aa15.49■□□□□ 0.07
VPS35-210ENST00000568784 ANXA13P27216 316 aa15.49■□□□□ 0.07
VPS35-210ENST00000568784 MFAP3P55082 362 aa15.49■□□□□ 0.07
VPS35-210ENST00000568784 CEP55Q53EZ4 464 aa15.49■□□□□ 0.07
VPS35-210ENST00000568784 TMEM179Q6ZVK1 233 aa15.49■□□□□ 0.07
VPS35-210ENST00000568784 SLC5A5Q92911 643 aa15.49■□□□□ 0.07
VPS35-210ENST00000568784 LENG9Q96B70 501 aa15.49■□□□□ 0.07
VPS35-210ENST00000568784 ACCSQ96QU6 501 aa15.49■□□□□ 0.07
VPS35-210ENST00000568784 TRIM6Q9C030 488 aaPredicted RBP15.49■□□□□ 0.07
VPS35-210ENST00000568784 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms