RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 LRFN3Q9BTN0 628 aa22.87■■□□□ 1.25
CLN3-219ENST00000565778 COLEC11Q9BWP8 271 aa22.87■■□□□ 1.25
CLN3-219ENST00000565778 PHF7Q9BWX1 381 aaPredicted RBP22.87■■□□□ 1.25
CLN3-219ENST00000565778 CCDC113Q9H0I3 377 aa22.87■■□□□ 1.25
CLN3-219ENST00000565778 PDZD7Q9H5P4 517 aa22.87■■□□□ 1.25
CLN3-219ENST00000565778 FAM86C2PA6NEL3 165 aa22.86■■□□□ 1.25
CLN3-219ENST00000565778 GPR37L1O60883 481 aa22.86■■□□□ 1.25
CLN3-219ENST00000565778 PEX3P56589 373 aa22.86■■□□□ 1.25
CLN3-219ENST00000565778 DSC1Q08554 894 aa22.86■■□□□ 1.25
CLN3-219ENST00000565778 ARL6IP4Q66PJ3 421 aaKnown RBP22.86■■□□□ 1.25
CLN3-219ENST00000565778 RINT1Q6NUQ1 792 aa22.86■■□□□ 1.25
CLN3-219ENST00000565778 KCNK18Q7Z418 384 aa22.86■■□□□ 1.25
CLN3-219ENST00000565778 RNF135Q8IUD6 432 aa22.86■■□□□ 1.25
CLN3-219ENST00000565778 SUSD6Q92537 303 aa22.86■■□□□ 1.25
CLN3-219ENST00000565778 RPS6KC1Q96S38 1066 aa22.86■■□□□ 1.25
CLN3-219ENST00000565778 PLIN2Q99541 437 aa22.86■■□□□ 1.25
CLN3-219ENST00000565778 EMILIN2Q9BXX0 1053 aa22.86■■□□□ 1.25
CLN3-219ENST00000565778 MRPL17Q9NRX2 175 aaKnown RBP22.86■■□□□ 1.25
CLN3-219ENST00000565778 HIP1RO75146 1068 aa22.85■■□□□ 1.25
CLN3-219ENST00000565778 KLRC2P26717 231 aa22.85■■□□□ 1.25
CLN3-219ENST00000565778 CUL4AQ13619 759 aa22.85■■□□□ 1.25
CLN3-219ENST00000565778 CBX2Q14781 532 aaPredicted RBP22.85■■□□□ 1.25
CLN3-219ENST00000565778 PTPN14Q15678 1187 aa22.85■■□□□ 1.25
CLN3-219ENST00000565778 CES5AQ6NT32 575 aa22.85■■□□□ 1.25
CLN3-219ENST00000565778 TAS1R1Q7RTX1 841 aa22.85■■□□□ 1.25
CLN3-219ENST00000565778 GSTCDQ8NEC7 633 aa22.85■■□□□ 1.25
CLN3-219ENST00000565778 CDK5RAP3Q96JB5 506 aa22.85■■□□□ 1.25
CLN3-219ENST00000565778 BACH2Q9BYV9 841 aa22.85■■□□□ 1.25
CLN3-219ENST00000565778 NT5C3AQ9H0P0 336 aa22.85■■□□□ 1.25
CLN3-219ENST00000565778 SNTG2Q9NY99 539 aa22.85■■□□□ 1.25
CLN3-219ENST00000565778 C2CD2LO14523 706 aa22.84■■□□□ 1.25
CLN3-219ENST00000565778 SOD2P04179 222 aa22.84■■□□□ 1.25
CLN3-219ENST00000565778 EEF1DP3Q658K8 133 aa22.84■■□□□ 1.25
CLN3-219ENST00000565778 C1orf186Q6ZWK4 172 aa22.84■■□□□ 1.25
CLN3-219ENST00000565778 PPFIBP1Q86W92 1011 aa22.84■■□□□ 1.25
CLN3-219ENST00000565778 DRC1Q96MC2 740 aa22.84■■□□□ 1.25
CLN3-219ENST00000565778 KLHL5Q96PQ7 755 aa22.84■■□□□ 1.25
CLN3-219ENST00000565778 MARCH5Q9NX47 278 aa22.84■■□□□ 1.25
CLN3-219ENST00000565778 SSX2IPQ9Y2D8 614 aa22.84■■□□□ 1.25
CLN3-219ENST00000565778 VPS37CA5D8V6 355 aaPredicted RBP22.83■■□□□ 1.25
CLN3-219ENST00000565778 SFI1A8K8P3 1242 aa22.83■■□□□ 1.25
CLN3-219ENST00000565778 LOC730098B7Z3J9 87 aa22.83■■□□□ 1.25
CLN3-219ENST00000565778 EPCAMP16422 314 aa22.83■■□□□ 1.25
CLN3-219ENST00000565778 NPTX2P47972 431 aa22.83■■□□□ 1.25
CLN3-219ENST00000565778 ITIH3Q06033 890 aa22.83■■□□□ 1.25
CLN3-219ENST00000565778 GRIK3Q13003 919 aa22.83■■□□□ 1.25
CLN3-219ENST00000565778 DMP1Q13316 513 aaPredicted RBP22.83■■□□□ 1.25
CLN3-219ENST00000565778 HYIQ5T013 277 aa22.83■■□□□ 1.25
CLN3-219ENST00000565778 NT5DC1Q5TFE4 455 aa22.83■■□□□ 1.25
CLN3-219ENST00000565778 ATF7IP2Q5U623 682 aa22.83■■□□□ 1.25
CLN3-219ENST00000565778 KIAA1841Q6NSI8 718 aa22.83■■□□□ 1.25
CLN3-219ENST00000565778 BRAPQ7Z569 592 aa22.83■■□□□ 1.25
CLN3-219ENST00000565778 KCTD17Q8N5Z5 321 aa22.83■■□□□ 1.25
CLN3-219ENST00000565778 C12orf76Q8N812 135 aaPredicted RBP22.83■■□□□ 1.25
CLN3-219ENST00000565778 SLC22A17Q8WUG5 538 aa22.83■■□□□ 1.25
CLN3-219ENST00000565778 RABGGTAQ92696 567 aa22.83■■□□□ 1.25
CLN3-219ENST00000565778 PNMA5Q96PV4 448 aa22.83■■□□□ 1.25
CLN3-219ENST00000565778 RUSC1Q9BVN2 902 aa22.83■■□□□ 1.25
CLN3-219ENST00000565778 ADAM7Q9H2U9 754 aa22.83■■□□□ 1.25
CLN3-219ENST00000565778 C11orf16Q9NQ32 467 aa22.83■■□□□ 1.25
CLN3-219ENST00000565778 KMT5AQ9NQR1 393 aa22.83■■□□□ 1.25
CLN3-219ENST00000565778 C5orf42Q9H799 3197 aa22.82■■□□□ 1.24
CLN3-219ENST00000565778 SPDYE4A6NLX3 237 aa22.82■■□□□ 1.24
CLN3-219ENST00000565778 LILRB3O75022 631 aa22.82■■□□□ 1.24
CLN3-219ENST00000565778 TADA2AO75478 443 aa22.82■■□□□ 1.24
CLN3-219ENST00000565778 EDN1P05305 212 aa22.82■■□□□ 1.24
CLN3-219ENST00000565778 URODP06132 367 aa22.82■■□□□ 1.24
CLN3-219ENST00000565778 CNPP09543 421 aaKnown RBP22.82■■□□□ 1.24
CLN3-219ENST00000565778 PDCP20941 246 aa22.82■■□□□ 1.24
CLN3-219ENST00000565778 RAD51AP2Q09MP3 1159 aa22.82■■□□□ 1.24
CLN3-219ENST00000565778 RARS2Q5T160 578 aaKnown RBP22.82■■□□□ 1.24
CLN3-219ENST00000565778 APBB1IPQ7Z5R6 666 aaPredicted RBP22.82■■□□□ 1.24
CLN3-219ENST00000565778 CABP7Q86V35 215 aa22.82■■□□□ 1.24
CLN3-219ENST00000565778 DAW1Q8N136 415 aa22.82■■□□□ 1.24
CLN3-219ENST00000565778 SYT2Q8N9I0 419 aaPredicted RBP22.82■■□□□ 1.24
CLN3-219ENST00000565778 HERC2P3Q9BVR0 1158 aa22.82■■□□□ 1.24
CLN3-219ENST00000565778 TIPINQ9BVW5 301 aa22.82■■□□□ 1.24
CLN3-219ENST00000565778 DZANK1Q9NVP4 752 aa22.82■■□□□ 1.24
CLN3-219ENST00000565778 RAPGEFL1Q9UHV5 662 aa22.82■■□□□ 1.24
CLN3-219ENST00000565778 MUTYHQ9UIF7 546 aa22.82■■□□□ 1.24
CLN3-219ENST00000565778 GDAQ9Y2T3 454 aa22.82■■□□□ 1.24
CLN3-219ENST00000565778 RBM19Q9Y4C8 960 aaKnown RBP22.82■■□□□ 1.24
CLN3-219ENST00000565778 F8W810 466 aa22.81■■□□□ 1.24
CLN3-219ENST00000565778 RECQL4O94761 1208 aa22.81■■□□□ 1.24
CLN3-219ENST00000565778 THP07101 528 aa22.81■■□□□ 1.24
CLN3-219ENST00000565778 DCAF4L1Q3SXM0 396 aa22.81■■□□□ 1.24
CLN3-219ENST00000565778 KANK3Q6NY19 840 aa22.81■■□□□ 1.24
CLN3-219ENST00000565778 AK8Q96MA6 479 aa22.81■■□□□ 1.24
CLN3-219ENST00000565778 TMEM134Q9H6X4 195 aa22.81■■□□□ 1.24
CLN3-219ENST00000565778 C17orf75Q9HAS0 396 aa22.81■■□□□ 1.24
CLN3-219ENST00000565778 DAXXQ9UER7 740 aaPredicted RBP22.81■■□□□ 1.24
CLN3-219ENST00000565778 ZMYM2Q9UBW7 1377 aa22.8■■□□□ 1.24
CLN3-219ENST00000565778 BMP15O95972 392 aa22.8■■□□□ 1.24
CLN3-219ENST00000565778 PLA2G4BP0C869 781 aa22.8■■□□□ 1.24
CLN3-219ENST00000565778 GUCY2CP25092 1073 aa22.8■■□□□ 1.24
CLN3-219ENST00000565778 UBA7P41226 1012 aa22.8■■□□□ 1.24
CLN3-219ENST00000565778 GLUD2P49448 558 aa22.8■■□□□ 1.24
CLN3-219ENST00000565778 TUSC3Q13454 348 aa22.8■■□□□ 1.24
CLN3-219ENST00000565778 SF3A1Q15459 793 aaKnown RBP22.8■■□□□ 1.24
CLN3-219ENST00000565778 HERC4Q5GLZ8 1057 aaPredicted RBP22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms