RNA–Protein interactions for RNA: ENST00000563790.5

HDGFL3-204, Transcript of HDGF like 3, humanhuman

TSL 3

Gene HDGFL3, Length 934 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-204ENST00000563790 VSIG10LQ86VR7 867 aa12.35□□□□□ -0.43
HDGFL3-204ENST00000563790 FAM228AQ86W67 206 aa12.35□□□□□ -0.43
HDGFL3-204ENST00000563790 PALB2Q86YC2 1186 aa12.35□□□□□ -0.43
HDGFL3-204ENST00000563790 CMTR1Q8N1G2 835 aaKnown RBP12.35□□□□□ -0.43
HDGFL3-204ENST00000563790 MRPL50Q8N5N7 158 aaKnown RBP12.35□□□□□ -0.43
HDGFL3-204ENST00000563790 SNIP1Q8TAD8 396 aaKnown RBP12.35□□□□□ -0.43
HDGFL3-204ENST00000563790 PDCD2LQ9BRP1 358 aa12.35□□□□□ -0.43
HDGFL3-204ENST00000563790 CDHR5Q9HBB8 845 aa12.35□□□□□ -0.43
HDGFL3-204ENST00000563790 ZNF287Q9HBT7 754 aa12.35□□□□□ -0.43
HDGFL3-204ENST00000563790 ERAP1Q9NZ08 941 aa12.35□□□□□ -0.43
HDGFL3-204ENST00000563790 SLC8A2Q9UPR5 921 aa12.35□□□□□ -0.43
HDGFL3-204ENST00000563790 MYH9P35579 1960 aaKnown RBP12.35□□□□□ -0.43
HDGFL3-204ENST00000563790 SMIM35A0A1B0GVV1 85 aa12.34□□□□□ -0.43
HDGFL3-204ENST00000563790 PRDM1O75626 825 aa12.34□□□□□ -0.43
HDGFL3-204ENST00000563790 HNRNPA1P09651 372 aaKnown RBP eCLIP12.34□□□□□ -0.43
HDGFL3-204ENST00000563790 TSPY3P0CV98 308 aa12.34□□□□□ -0.43
HDGFL3-204ENST00000563790 TSPY8P0CW00 308 aa12.34□□□□□ -0.43
HDGFL3-204ENST00000563790 NDUFV2P19404 249 aa12.34□□□□□ -0.43
HDGFL3-204ENST00000563790 SLC11A1P49279 550 aa12.34□□□□□ -0.43
HDGFL3-204ENST00000563790 ATXN3P54252 364 aaPredicted RBP12.34□□□□□ -0.43
HDGFL3-204ENST00000563790 SLC14A1Q13336 389 aa12.34□□□□□ -0.43
HDGFL3-204ENST00000563790 NEDD9Q14511 834 aa12.34□□□□□ -0.43
HDGFL3-204ENST00000563790 RNF169Q8NCN4 708 aa12.34□□□□□ -0.43
HDGFL3-204ENST00000563790 DNAAF2Q9NVR5 837 aaKnown RBP12.34□□□□□ -0.43
HDGFL3-204ENST00000563790 GINS2Q9Y248 185 aa12.34□□□□□ -0.43
HDGFL3-204ENST00000563790 SLC4A4Q9Y6R1 1079 aa12.34□□□□□ -0.43
HDGFL3-204ENST00000563790 BLACEA4D250 179 aa12.33□□□□□ -0.44
HDGFL3-204ENST00000563790 ARNTLO00327 626 aa12.33□□□□□ -0.44
HDGFL3-204ENST00000563790 MARK3P27448 753 aa12.33□□□□□ -0.44
HDGFL3-204ENST00000563790 GDI1P31150 447 aa12.33□□□□□ -0.44
HDGFL3-204ENST00000563790 RNASELQ05823 741 aaKnown RBP12.33□□□□□ -0.44
HDGFL3-204ENST00000563790 PPP4R3BQ5MIZ7 849 aa12.33□□□□□ -0.44
HDGFL3-204ENST00000563790 TXNDC11Q6PKC3 985 aa12.33□□□□□ -0.44
HDGFL3-204ENST00000563790 ING5Q8WYH8 240 aa12.33□□□□□ -0.44
HDGFL3-204ENST00000563790 NXPE2Q96DL1 559 aa12.33□□□□□ -0.44
HDGFL3-204ENST00000563790 C8orf33Q9H7E9 229 aaPredicted RBP12.33□□□□□ -0.44
HDGFL3-204ENST00000563790 DNAJB4Q9UDY4 337 aa12.33□□□□□ -0.44
HDGFL3-204ENST00000563790 EBF1Q9UH73 591 aa12.33□□□□□ -0.44
HDGFL3-204ENST00000563790 TACC2O95359 2948 aa12.33□□□□□ -0.44
HDGFL3-204ENST00000563790 INSRRP14616 1297 aa12.32□□□□□ -0.44
HDGFL3-204ENST00000563790 HOXA9P31269 272 aa12.32□□□□□ -0.44
HDGFL3-204ENST00000563790 DHPSP49366 369 aaPredicted RBP12.32□□□□□ -0.44
HDGFL3-204ENST00000563790 NFATC3Q12968 1075 aa12.32□□□□□ -0.44
HDGFL3-204ENST00000563790 PREPLQ4J6C6 727 aaPredicted RBP12.32□□□□□ -0.44
HDGFL3-204ENST00000563790 C6orf132Q5T0Z8 1188 aa12.32□□□□□ -0.44
HDGFL3-204ENST00000563790 MCF2L2Q86YR7 1114 aa12.32□□□□□ -0.44
HDGFL3-204ENST00000563790 SYT12Q8IV01 421 aa12.32□□□□□ -0.44
HDGFL3-204ENST00000563790 NAXDQ8IW45 347 aa12.32□□□□□ -0.44
HDGFL3-204ENST00000563790 MINDY1Q8N5J2 469 aa12.32□□□□□ -0.44
HDGFL3-204ENST00000563790 MCRS1Q96EZ8 462 aa12.32□□□□□ -0.44
HDGFL3-204ENST00000563790 HERC2P3Q9BVR0 1158 aa12.32□□□□□ -0.44
HDGFL3-204ENST00000563790 GTPBP2Q9BX10 602 aaKnown RBP12.32□□□□□ -0.44
HDGFL3-204ENST00000563790 ZFP14Q9HCL3 533 aa12.32□□□□□ -0.44
HDGFL3-204ENST00000563790 TBC1D13Q9NVG8 400 aa12.32□□□□□ -0.44
HDGFL3-204ENST00000563790 STX8Q9UNK0 236 aa12.32□□□□□ -0.44
HDGFL3-204ENST00000563790 SDK2Q58EX2 2172 aa12.32□□□□□ -0.44
HDGFL3-204ENST00000563790 BAZ2BQ9UIF8 2168 aaKnown RBP12.31□□□□□ -0.44
HDGFL3-204ENST00000563790 A0A0U1RQF3 1178 aa12.31□□□□□ -0.44
HDGFL3-204ENST00000563790 ZNF862O60290 1169 aa12.31□□□□□ -0.44
HDGFL3-204ENST00000563790 CBFA2T3O75081 653 aa12.31□□□□□ -0.44
HDGFL3-204ENST00000563790 ATG13O75143 517 aa12.31□□□□□ -0.44
HDGFL3-204ENST00000563790 POU2F2P09086 479 aa12.31□□□□□ -0.44
HDGFL3-204ENST00000563790 PSMC3P17980 439 aa12.31□□□□□ -0.44
HDGFL3-204ENST00000563790 TCF7P36402 384 aaPredicted RBP12.31□□□□□ -0.44
HDGFL3-204ENST00000563790 GLUD2P49448 558 aa12.31□□□□□ -0.44
HDGFL3-204ENST00000563790 DDX10Q13206 875 aaKnown RBP12.31□□□□□ -0.44
HDGFL3-204ENST00000563790 TICAM1Q8IUC6 712 aa12.31□□□□□ -0.44
HDGFL3-204ENST00000563790 SPACA3Q8IXA5 215 aa12.31□□□□□ -0.44
HDGFL3-204ENST00000563790 IL31RAQ8NI17 732 aa12.31□□□□□ -0.44
HDGFL3-204ENST00000563790 MBOAT7Q96N66 472 aa12.31□□□□□ -0.44
HDGFL3-204ENST00000563790 APOL6Q9BWW8 343 aa12.31□□□□□ -0.44
HDGFL3-204ENST00000563790 LRRC4CQ9HCJ2 640 aa12.31□□□□□ -0.44
HDGFL3-204ENST00000563790 TMEM74BQ9NUR3 256 aa12.31□□□□□ -0.44
HDGFL3-204ENST00000563790 TOR4AQ9NXH8 423 aa12.31□□□□□ -0.44
HDGFL3-204ENST00000563790 PLEKHB1Q9UF11 243 aaPredicted RBP12.31□□□□□ -0.44
HDGFL3-204ENST00000563790 MTMR7Q9Y216 660 aa12.31□□□□□ -0.44
HDGFL3-204ENST00000563790 MYBPHLA2RUH7 354 aa12.3□□□□□ -0.44
HDGFL3-204ENST00000563790 FAM149AA5PLN7 773 aa12.3□□□□□ -0.44
HDGFL3-204ENST00000563790 MINDY4BA8MYZ0 360 aa12.3□□□□□ -0.44
HDGFL3-204ENST00000563790 B4E1Z4 1266 aa12.3□□□□□ -0.44
HDGFL3-204ENST00000563790 XYLBO75191 536 aa12.3□□□□□ -0.44
HDGFL3-204ENST00000563790 CTHP32929 405 aa12.3□□□□□ -0.44
HDGFL3-204ENST00000563790 SEMG2Q02383 582 aa12.3□□□□□ -0.44
HDGFL3-204ENST00000563790 KCNH2Q12809 1159 aa12.3□□□□□ -0.44
HDGFL3-204ENST00000563790 PGM5Q15124 567 aa12.3□□□□□ -0.44
HDGFL3-204ENST00000563790 SLFNL1Q499Z3 407 aa12.3□□□□□ -0.44
HDGFL3-204ENST00000563790 PABPC1LQ4VXU2 614 aaKnown RBP12.3□□□□□ -0.44
HDGFL3-204ENST00000563790 VITQ6UXI7 678 aa12.3□□□□□ -0.44
HDGFL3-204ENST00000563790 RNF168Q8IYW5 571 aaPredicted RBP12.3□□□□□ -0.44
HDGFL3-204ENST00000563790 SPDYE1Q8NFV5 336 aaPredicted RBP12.3□□□□□ -0.44
HDGFL3-204ENST00000563790 HHIPQ96QV1 700 aa12.3□□□□□ -0.44
HDGFL3-204ENST00000563790 MEIS3Q99687 375 aa12.3□□□□□ -0.44
HDGFL3-204ENST00000563790 PRKRIP1Q9H875 184 aaPredicted RBP12.3□□□□□ -0.44
HDGFL3-204ENST00000563790 CHST12Q9NRB3 414 aa12.3□□□□□ -0.44
HDGFL3-204ENST00000563790 PCDHA1Q9Y5I3 950 aa12.3□□□□□ -0.44
HDGFL3-204ENST00000563790 SPECC1L-ADORA2AF8WAN1 911 aa12.29□□□□□ -0.44
HDGFL3-204ENST00000563790 TNFRSF10BO14763 440 aa12.29□□□□□ -0.44
HDGFL3-204ENST00000563790 SUV39H1O43463 412 aa12.29□□□□□ -0.44
HDGFL3-204ENST00000563790 GJB3O75712 270 aa12.29□□□□□ -0.44
HDGFL3-204ENST00000563790 ZSCAN20P17040 1043 aaPredicted RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms