RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 SPATA20Q8TB22 786 aa10.74□□□□□ -0.69
CLK3-208ENST00000562626 HELQQ8TDG4 1101 aa10.74□□□□□ -0.69
CLK3-208ENST00000562626 ZNF689Q96CS4 500 aaPredicted RBP10.74□□□□□ -0.69
CLK3-208ENST00000562626 APOL6Q9BWW8 343 aa10.74□□□□□ -0.69
CLK3-208ENST00000562626 MRPL4Q9BYD3 311 aaKnown RBP10.74□□□□□ -0.69
CLK3-208ENST00000562626 LRRC27Q9C0I9 530 aa10.74□□□□□ -0.69
CLK3-208ENST00000562626 C1orf112Q9NSG2 853 aa10.74□□□□□ -0.69
CLK3-208ENST00000562626 TMEM161AQ9NX61 479 aa10.74□□□□□ -0.69
CLK3-208ENST00000562626 MIOSQ9NXC5 875 aa10.74□□□□□ -0.69
CLK3-208ENST00000562626 ANKFY1Q9P2R3 1169 aa10.74□□□□□ -0.69
CLK3-208ENST00000562626 MAN1B1Q9UKM7 699 aa10.74□□□□□ -0.69
CLK3-208ENST00000562626 TNFSF13BQ9Y275 285 aa10.74□□□□□ -0.69
CLK3-208ENST00000562626 N4BP3O15049 544 aa10.73□□□□□ -0.69
CLK3-208ENST00000562626 TGFB1I1O43294 461 aa10.73□□□□□ -0.69
CLK3-208ENST00000562626 ZNF623O75123 536 aa10.73□□□□□ -0.69
CLK3-208ENST00000562626 RHOBTB3O94955 611 aa10.73□□□□□ -0.69
CLK3-208ENST00000562626 CA3P07451 260 aa10.73□□□□□ -0.69
CLK3-208ENST00000562626 PLA2G5P39877 138 aa10.73□□□□□ -0.69
CLK3-208ENST00000562626 TNFSF9P41273 254 aa10.73□□□□□ -0.69
CLK3-208ENST00000562626 WNT7BP56706 349 aa10.73□□□□□ -0.69
CLK3-208ENST00000562626 STRN3Q13033 797 aa10.73□□□□□ -0.69
CLK3-208ENST00000562626 PCBP1Q15365 356 aaKnown RBP eCLIP10.73□□□□□ -0.69
CLK3-208ENST00000562626 ZNF568Q3ZCX4 644 aa10.73□□□□□ -0.69
CLK3-208ENST00000562626 ZPBP2Q6X784 338 aa10.73□□□□□ -0.69
CLK3-208ENST00000562626 NELFCDQ8IXH7 590 aa10.73□□□□□ -0.69
CLK3-208ENST00000562626 GSTCDQ8NEC7 633 aa10.73□□□□□ -0.69
CLK3-208ENST00000562626 PHOSPHO2Q8TCD6 241 aa10.73□□□□□ -0.69
CLK3-208ENST00000562626 ZNF507Q8TCN5 953 aa10.73□□□□□ -0.69
CLK3-208ENST00000562626 FAM122AQ96E09 287 aa10.73□□□□□ -0.69
CLK3-208ENST00000562626 ZFP42Q96MM3 310 aa10.73□□□□□ -0.69
CLK3-208ENST00000562626 CASD1Q96PB1 797 aa10.73□□□□□ -0.69
CLK3-208ENST00000562626 NKX2-4Q9H2Z4 354 aa10.73□□□□□ -0.69
CLK3-208ENST00000562626 CLSTN2Q9H4D0 955 aa10.73□□□□□ -0.69
CLK3-208ENST00000562626 ELAC1Q9H777 363 aaKnown RBP10.73□□□□□ -0.69
CLK3-208ENST00000562626 EXOC1Q9NV70 894 aa10.73□□□□□ -0.69
CLK3-208ENST00000562626 SNTG2Q9NY99 539 aa10.73□□□□□ -0.69
CLK3-208ENST00000562626 KLK14Q9P0G3 267 aa10.73□□□□□ -0.69
CLK3-208ENST00000562626 PLAGL2Q9UPG8 496 aa10.73□□□□□ -0.69
CLK3-208ENST00000562626 MAPK8IP1Q9UQF2 711 aa10.73□□□□□ -0.69
CLK3-208ENST00000562626 CDH23Q9H251 3354 aa10.73□□□□□ -0.69
CLK3-208ENST00000562626 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.72□□□□□ -0.69
CLK3-208ENST00000562626 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.72□□□□□ -0.69
CLK3-208ENST00000562626 EPOPA6NHQ4 379 aa10.72□□□□□ -0.69
CLK3-208ENST00000562626 BIN1O00499 593 aa10.72□□□□□ -0.69
CLK3-208ENST00000562626 HNRNPDLO14979 420 aaKnown RBP10.72□□□□□ -0.69
CLK3-208ENST00000562626 TLL1O43897 1013 aa10.72□□□□□ -0.69
CLK3-208ENST00000562626 OFD1O75665 1012 aa10.72□□□□□ -0.69
CLK3-208ENST00000562626 TOM1L1O75674 476 aa10.72□□□□□ -0.69
CLK3-208ENST00000562626 RECQL4O94761 1208 aa10.72□□□□□ -0.69
CLK3-208ENST00000562626 MYL1P05976 194 aa10.72□□□□□ -0.69
CLK3-208ENST00000562626 CD44P16070 742 aaKnown RBP10.72□□□□□ -0.69
CLK3-208ENST00000562626 DNAJB2P25686 324 aa10.72□□□□□ -0.69
CLK3-208ENST00000562626 OSTNP61366 133 aa10.72□□□□□ -0.69
CLK3-208ENST00000562626 KCNB1Q14721 858 aa10.72□□□□□ -0.69
CLK3-208ENST00000562626 BMT2Q1RMZ1 405 aa10.72□□□□□ -0.69
CLK3-208ENST00000562626 TMEM132AQ24JP5 1023 aa10.72□□□□□ -0.69
CLK3-208ENST00000562626 KANK3Q6NY19 840 aa10.72□□□□□ -0.69
CLK3-208ENST00000562626 MPZL3Q6UWV2 235 aa10.72□□□□□ -0.69
CLK3-208ENST00000562626 ELOA2Q8IYF1 753 aaPredicted RBP10.72□□□□□ -0.69
CLK3-208ENST00000562626 THNSL1Q8IYQ7 743 aa10.72□□□□□ -0.69
CLK3-208ENST00000562626 SP7Q8TDD2 431 aaPredicted RBP10.72□□□□□ -0.69
CLK3-208ENST00000562626 HVCN1Q96D96 273 aa10.72□□□□□ -0.69
CLK3-208ENST00000562626 CCDC51Q96ER9 411 aa10.72□□□□□ -0.69
CLK3-208ENST00000562626 BICD1Q96G01 975 aa10.72□□□□□ -0.69
CLK3-208ENST00000562626 FAM84AQ96KN4 292 aa10.72□□□□□ -0.69
CLK3-208ENST00000562626 GAD1Q99259 594 aa10.72□□□□□ -0.69
CLK3-208ENST00000562626 CBWD1Q9BRT8 395 aa10.72□□□□□ -0.69
CLK3-208ENST00000562626 MTIF3Q9H2K0 278 aaKnown RBP10.72□□□□□ -0.69
CLK3-208ENST00000562626 TTYH1Q9H313 450 aaPredicted RBP10.72□□□□□ -0.69
CLK3-208ENST00000562626 CACNG4Q9UBN1 327 aa10.72□□□□□ -0.69
CLK3-208ENST00000562626 PCDHB7Q9Y5E2 793 aa10.72□□□□□ -0.69
CLK3-208ENST00000562626 PCDHA11Q9Y5I1 949 aa10.72□□□□□ -0.69
CLK3-208ENST00000562626 MRPL42Q9Y6G3 142 aaKnown RBP10.72□□□□□ -0.69
CLK3-208ENST00000562626 STYXL1Q9Y6J8 313 aa10.72□□□□□ -0.69
CLK3-208ENST00000562626 MTCL1Q9Y4B5 1905 aaKnown RBP10.72□□□□□ -0.69
CLK3-208ENST00000562626 A0A0B4J269 797 aa10.71□□□□□ -0.69
CLK3-208ENST00000562626 LINC01553A4QN01 128 aa10.71□□□□□ -0.69
CLK3-208ENST00000562626 TBKBP1A7MCY6 615 aa10.71□□□□□ -0.69
CLK3-208ENST00000562626 H0YCG3 227 aa10.71□□□□□ -0.69
CLK3-208ENST00000562626 PTGESO14684 152 aa10.71□□□□□ -0.69
CLK3-208ENST00000562626 EIF3DO15371 548 aaKnown RBP eCLIP10.71□□□□□ -0.69
CLK3-208ENST00000562626 ITGA4P13612 1032 aa10.71□□□□□ -0.69
CLK3-208ENST00000562626 IGFBP6P24592 240 aaPredicted RBP10.71□□□□□ -0.69
CLK3-208ENST00000562626 MLH1P40692 756 aa10.71□□□□□ -0.69
CLK3-208ENST00000562626 LIG4P49917 911 aa10.71□□□□□ -0.69
CLK3-208ENST00000562626 RAB27AP51159 221 aa10.71□□□□□ -0.69
CLK3-208ENST00000562626 SMAD3P84022 425 aaKnown RBP10.71□□□□□ -0.69
CLK3-208ENST00000562626 TAP1Q03518 808 aa10.71□□□□□ -0.69
CLK3-208ENST00000562626 MCL1Q07820 350 aa10.71□□□□□ -0.69
CLK3-208ENST00000562626 NOLC1Q14978 699 aaKnown RBP eCLIP10.71□□□□□ -0.69
CLK3-208ENST00000562626 CRELD2Q6UXH1 353 aaPredicted RBP10.71□□□□□ -0.69
CLK3-208ENST00000562626 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.71□□□□□ -0.69
CLK3-208ENST00000562626 SMARCE1Q969G3 411 aa10.71□□□□□ -0.69
CLK3-208ENST00000562626 SAAL1Q96ER3 474 aa10.71□□□□□ -0.69
CLK3-208ENST00000562626 ACCSQ96QU6 501 aa10.71□□□□□ -0.69
CLK3-208ENST00000562626 RAD9AQ99638 391 aa10.71□□□□□ -0.69
CLK3-208ENST00000562626 C17orf80Q9BSJ5 609 aa10.71□□□□□ -0.69
CLK3-208ENST00000562626 ZBED2Q9BTP6 218 aa10.71□□□□□ -0.69
CLK3-208ENST00000562626 KCTD10Q9H3F6 313 aa10.71□□□□□ -0.69
CLK3-208ENST00000562626 CWH43Q9H720 699 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 91.2 ms