RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 FAM189BP81408 668 aa12.98□□□□□ -0.33
LDLR-212ENST00000560467 TYRO3Q06418 890 aa12.98□□□□□ -0.33
LDLR-212ENST00000560467 PSMD2Q13200 908 aa12.98□□□□□ -0.33
LDLR-212ENST00000560467 GSE1Q14687 1217 aa12.98□□□□□ -0.33
LDLR-212ENST00000560467 XKR9Q5GH70 373 aa12.98□□□□□ -0.33
LDLR-212ENST00000560467 ZNF484Q5JVG2 852 aa12.98□□□□□ -0.33
LDLR-212ENST00000560467 CNNM4Q6P4Q7 775 aa12.98□□□□□ -0.33
LDLR-212ENST00000560467 LRRC55Q6ZSA7 311 aa12.98□□□□□ -0.33
LDLR-212ENST00000560467 STXBP4Q6ZWJ1 553 aa12.98□□□□□ -0.33
LDLR-212ENST00000560467 METTL13Q8N6R0 699 aa12.98□□□□□ -0.33
LDLR-212ENST00000560467 MLKLQ8NB16 471 aa12.98□□□□□ -0.33
LDLR-212ENST00000560467 ANP32BQ92688 251 aaKnown RBP12.98□□□□□ -0.33
LDLR-212ENST00000560467 STAMQ92783 540 aa12.98□□□□□ -0.33
LDLR-212ENST00000560467 ZHX3Q9H4I2 956 aa12.98□□□□□ -0.33
LDLR-212ENST00000560467 PPME1Q9Y570 386 aa12.98□□□□□ -0.33
LDLR-212ENST00000560467 COL4A3BPQ9Y5P4 624 aa12.98□□□□□ -0.33
LDLR-212ENST00000560467 FSD2A1L4K1 749 aa12.97□□□□□ -0.33
LDLR-212ENST00000560467 GOLGA6L3A6NEY3 463 aa12.97□□□□□ -0.33
LDLR-212ENST00000560467 BECN2A8MW95 431 aa12.97□□□□□ -0.33
LDLR-212ENST00000560467 BIN1O00499 593 aa12.97□□□□□ -0.33
LDLR-212ENST00000560467 SRGAP2BP0DMP2 458 aa12.97□□□□□ -0.33
LDLR-212ENST00000560467 NLRP12P59046 1061 aa12.97□□□□□ -0.33
LDLR-212ENST00000560467 PLCB3Q01970 1234 aa12.97□□□□□ -0.33
LDLR-212ENST00000560467 DPYDQ12882 1025 aa12.97□□□□□ -0.33
LDLR-212ENST00000560467 KCNB1Q14721 858 aa12.97□□□□□ -0.33
LDLR-212ENST00000560467 CT47A1Q5JQC4 288 aaPredicted RBP12.97□□□□□ -0.33
LDLR-212ENST00000560467 ODR4Q5SWX8 454 aa12.97□□□□□ -0.33
LDLR-212ENST00000560467 PDE12Q6L8Q7 609 aaKnown RBP12.97□□□□□ -0.33
LDLR-212ENST00000560467 TMEM184AQ6ZMB5 413 aa12.97□□□□□ -0.33
LDLR-212ENST00000560467 ZBTB33Q86T24 672 aa12.97□□□□□ -0.33
LDLR-212ENST00000560467 GRAMD1CQ8IYS0 662 aa12.97□□□□□ -0.33
LDLR-212ENST00000560467 PIGOQ8TEQ8 1089 aa12.97□□□□□ -0.33
LDLR-212ENST00000560467 DDX12PQ92771 950 aa12.97□□□□□ -0.33
LDLR-212ENST00000560467 ZNF668Q96K58 619 aaPredicted RBP12.97□□□□□ -0.33
LDLR-212ENST00000560467 CEP170P1Q96L14 293 aa12.97□□□□□ -0.33
LDLR-212ENST00000560467 CASD1Q96PB1 797 aa12.97□□□□□ -0.33
LDLR-212ENST00000560467 PRRX2Q99811 253 aa12.97□□□□□ -0.33
LDLR-212ENST00000560467 JPH2Q9BR39 696 aaPredicted RBP12.97□□□□□ -0.33
LDLR-212ENST00000560467 TRIM9Q9C026 710 aa12.97□□□□□ -0.33
LDLR-212ENST00000560467 TMEM117Q9H0C3 514 aa12.97□□□□□ -0.33
LDLR-212ENST00000560467 BLZF1Q9H2G9 400 aa12.97□□□□□ -0.33
LDLR-212ENST00000560467 BLOC1S4Q9NUP1 217 aa12.97□□□□□ -0.33
LDLR-212ENST00000560467 LZTS1Q9Y250 596 aa12.97□□□□□ -0.33
LDLR-212ENST00000560467 GOLGA6L19H0YKK7 550 aa12.96□□□□□ -0.33
LDLR-212ENST00000560467 GFRA3O60609 400 aa12.96□□□□□ -0.33
LDLR-212ENST00000560467 FAM13AO94988 1023 aa12.96□□□□□ -0.33
LDLR-212ENST00000560467 OATP04181 439 aa12.96□□□□□ -0.33
LDLR-212ENST00000560467 GAP43P17677 238 aa12.96□□□□□ -0.33
LDLR-212ENST00000560467 AVPR2P30518 371 aa12.96□□□□□ -0.33
LDLR-212ENST00000560467 CUL4BQ13620 913 aa12.96□□□□□ -0.33
LDLR-212ENST00000560467 ECM1Q16610 540 aa12.96□□□□□ -0.33
LDLR-212ENST00000560467 CLLU1OSQ5K130 101 aa12.96□□□□□ -0.33
LDLR-212ENST00000560467 NT5DC1Q5TFE4 455 aa12.96□□□□□ -0.33
LDLR-212ENST00000560467 PADI6Q6TGC4 694 aa12.96□□□□□ -0.33
LDLR-212ENST00000560467 KCNT2Q6UVM3 1135 aa12.96□□□□□ -0.33
LDLR-212ENST00000560467 UNC13DQ70J99 1090 aa12.96□□□□□ -0.33
LDLR-212ENST00000560467 DYMQ7RTS9 669 aa12.96□□□□□ -0.33
LDLR-212ENST00000560467 LRRC43Q8N309 656 aa12.96□□□□□ -0.33
LDLR-212ENST00000560467 RNF169Q8NCN4 708 aa12.96□□□□□ -0.33
LDLR-212ENST00000560467 KREMEN2Q8NCW0 462 aa12.96□□□□□ -0.33
LDLR-212ENST00000560467 SLC7A3Q8WY07 619 aa12.96□□□□□ -0.33
LDLR-212ENST00000560467 BBXQ8WY36 941 aaPredicted RBP12.96□□□□□ -0.33
LDLR-212ENST00000560467 SNX27Q96L92 541 aa12.96□□□□□ -0.33
LDLR-212ENST00000560467 DRC1Q96MC2 740 aa12.96□□□□□ -0.33
LDLR-212ENST00000560467 ZNF558Q96NG5 402 aa12.96□□□□□ -0.33
LDLR-212ENST00000560467 SMOC2Q9H3U7 446 aa12.96□□□□□ -0.33
LDLR-212ENST00000560467 ELAC1Q9H777 363 aaKnown RBP12.96□□□□□ -0.33
LDLR-212ENST00000560467 NGRNQ9NPE2 291 aaKnown RBP12.96□□□□□ -0.33
LDLR-212ENST00000560467 PANK4Q9NVE7 773 aa12.96□□□□□ -0.33
LDLR-212ENST00000560467 RNF216Q9NWF9 866 aaPredicted RBP12.96□□□□□ -0.33
LDLR-212ENST00000560467 SEPT9Q9UHD8 586 aaPredicted RBP12.96□□□□□ -0.33
LDLR-212ENST00000560467 PUF60Q9UHX1 559 aaKnown RBP12.96□□□□□ -0.33
LDLR-212ENST00000560467 MAFBQ9Y5Q3 323 aaPredicted RBP12.96□□□□□ -0.33
LDLR-212ENST00000560467 USP34Q70CQ2 3546 aa12.96□□□□□ -0.33
LDLR-212ENST00000560467 PLXNA4Q9HCM2 1894 aa12.95□□□□□ -0.34
LDLR-212ENST00000560467 MYMKA6NI61 221 aa12.95□□□□□ -0.34
LDLR-212ENST00000560467 SMTNL1A8MU46 457 aa12.95□□□□□ -0.34
LDLR-212ENST00000560467 DGAT1O75907 488 aa12.95□□□□□ -0.34
LDLR-212ENST00000560467 RFC5P40937 340 aa12.95□□□□□ -0.34
LDLR-212ENST00000560467 DNM2P50570 870 aa12.95□□□□□ -0.34
LDLR-212ENST00000560467 SLC12A3P55017 1021 aa12.95□□□□□ -0.34
LDLR-212ENST00000560467 PRKCEQ02156 737 aa12.95□□□□□ -0.34
LDLR-212ENST00000560467 L1TD1Q5T7N2 865 aaKnown RBP12.95□□□□□ -0.34
LDLR-212ENST00000560467 ZNF658Q5TYW1 1059 aaPredicted RBP12.95□□□□□ -0.34
LDLR-212ENST00000560467 FAM43BQ6ZT52 329 aaPredicted RBP12.95□□□□□ -0.34
LDLR-212ENST00000560467 LRRC71Q8N4P6 559 aa12.95□□□□□ -0.34
LDLR-212ENST00000560467 MCPH1Q8NEM0 835 aa12.95□□□□□ -0.34
LDLR-212ENST00000560467 ATOH1Q92858 354 aaPredicted RBP12.95□□□□□ -0.34
LDLR-212ENST00000560467 ADAMTS10Q9H324 1103 aa12.95□□□□□ -0.34
LDLR-212ENST00000560467 ODF2LQ9ULJ1 636 aa12.95□□□□□ -0.34
LDLR-212ENST00000560467 AKT3Q9Y243 479 aa12.95□□□□□ -0.34
LDLR-212ENST00000560467 PTPRZ1P23471 2315 aaPredicted RBP12.95□□□□□ -0.34
LDLR-212ENST00000560467 C2CD4DB7Z1M9 353 aa12.94□□□□□ -0.34
LDLR-212ENST00000560467 H0YCG3 227 aa12.94□□□□□ -0.34
LDLR-212ENST00000560467 HOXA2O43364 376 aa12.94□□□□□ -0.34
LDLR-212ENST00000560467 WEE2P0C1S8 567 aa12.94□□□□□ -0.34
LDLR-212ENST00000560467 PRR29P0C7W0 189 aa12.94□□□□□ -0.34
LDLR-212ENST00000560467 HOXB8P17481 243 aaPredicted RBP12.94□□□□□ -0.34
LDLR-212ENST00000560467 CYP11B2P19099 503 aa12.94□□□□□ -0.34
LDLR-212ENST00000560467 FGFR4P22455 802 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms