RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 OXSMQ9NWU1 459 aa7.78□□□□□ -1.16
RTF1-204ENST00000558117 ZKSCAN5Q9Y2L8 839 aa7.78□□□□□ -1.16
RTF1-204ENST00000558117 KDRP35968 1356 aa7.78□□□□□ -1.16
RTF1-204ENST00000558117 CD163L1Q9NR16 1453 aa7.78□□□□□ -1.16
RTF1-204ENST00000558117 SCN11AQ9UI33 1791 aa7.78□□□□□ -1.16
RTF1-204ENST00000558117 MAP3K19Q56UN5 1328 aa7.78□□□□□ -1.16
RTF1-204ENST00000558117 LAMA2P24043 3122 aaKnown RBP7.77□□□□□ -1.17
RTF1-204ENST00000558117 CARMIL3Q8ND23 1372 aa7.77□□□□□ -1.17
RTF1-204ENST00000558117 H7C1D1 291 aa7.77□□□□□ -1.17
RTF1-204ENST00000558117 FZD9O00144 591 aa7.77□□□□□ -1.17
RTF1-204ENST00000558117 MPIG6BO95866 241 aa7.77□□□□□ -1.17
RTF1-204ENST00000558117 KNG1P01042 644 aa7.77□□□□□ -1.17
RTF1-204ENST00000558117 COL6A1P12109 1028 aa7.77□□□□□ -1.17
RTF1-204ENST00000558117 EPS15P42566 896 aa7.77□□□□□ -1.17
RTF1-204ENST00000558117 HUNKP57058 714 aa7.77□□□□□ -1.17
RTF1-204ENST00000558117 TAF7LQ5H9L4 462 aa7.77□□□□□ -1.17
RTF1-204ENST00000558117 ZFYVE27Q5T4F4 411 aa7.77□□□□□ -1.17
RTF1-204ENST00000558117 RNF180Q86T96 592 aa7.77□□□□□ -1.17
RTF1-204ENST00000558117 FERMT3Q86UX7 667 aa7.77□□□□□ -1.17
RTF1-204ENST00000558117 GPC2Q8N158 579 aa7.77□□□□□ -1.17
RTF1-204ENST00000558117 KIAA1958Q8N8K9 716 aa7.77□□□□□ -1.17
RTF1-204ENST00000558117 CHTF18Q8WVB6 975 aa7.77□□□□□ -1.17
RTF1-204ENST00000558117 AMNQ9BXJ7 453 aa7.77□□□□□ -1.17
RTF1-204ENST00000558117 IFT57Q9NWB7 429 aa7.77□□□□□ -1.17
RTF1-204ENST00000558117 THG1LQ9NWX6 298 aaKnown RBP7.77□□□□□ -1.17
RTF1-204ENST00000558117 PCDH11XQ9BZA7 1347 aa7.77□□□□□ -1.17
RTF1-204ENST00000558117 PCDH11YQ9BZA8 1340 aa7.77□□□□□ -1.17
RTF1-204ENST00000558117 PRAMEF22A3QJZ6 481 aa7.76□□□□□ -1.17
RTF1-204ENST00000558117 SYN1P17600 705 aa7.76□□□□□ -1.17
RTF1-204ENST00000558117 PTX3P26022 381 aaPredicted RBP7.76□□□□□ -1.17
RTF1-204ENST00000558117 NFATC3Q12968 1075 aa7.76□□□□□ -1.17
RTF1-204ENST00000558117 ZNF174Q15697 407 aa7.76□□□□□ -1.17
RTF1-204ENST00000558117 WDR72Q3MJ13 1102 aa7.76□□□□□ -1.17
RTF1-204ENST00000558117 RGMBQ6NW40 437 aa7.76□□□□□ -1.17
RTF1-204ENST00000558117 LRSAM1Q6UWE0 723 aa7.76□□□□□ -1.17
RTF1-204ENST00000558117 USP50Q70EL3 339 aaPredicted RBP7.76□□□□□ -1.17
RTF1-204ENST00000558117 DEFB123Q8N688 67 aa7.76□□□□□ -1.17
RTF1-204ENST00000558117 NUDT10Q8NFP7 164 aa7.76□□□□□ -1.17
RTF1-204ENST00000558117 CXorf38Q8TB03 319 aa7.76□□□□□ -1.17
RTF1-204ENST00000558117 ERCC4Q92889 916 aaPredicted RBP7.76□□□□□ -1.17
RTF1-204ENST00000558117 ZNF622Q969S3 477 aaKnown RBP eCLIP7.76□□□□□ -1.172e-7■□□□□ 10.6
RTF1-204ENST00000558117 NUDT11Q96G61 164 aa7.76□□□□□ -1.17
RTF1-204ENST00000558117 ELF4Q99607 663 aaPredicted RBP7.76□□□□□ -1.17
RTF1-204ENST00000558117 GLIS2Q9BZE0 524 aaPredicted RBP7.76□□□□□ -1.17
RTF1-204ENST00000558117 GALNT8Q9NY28 637 aa7.76□□□□□ -1.17
RTF1-204ENST00000558117 MAPRE3Q9UPY8 281 aa7.76□□□□□ -1.17
RTF1-204ENST00000558117 ZDHHC9Q9Y397 364 aa7.76□□□□□ -1.17
RTF1-204ENST00000558117 ASB1Q9Y576 335 aa7.76□□□□□ -1.17
RTF1-204ENST00000558117 PAPPA2Q9BXP8 1791 aa7.76□□□□□ -1.17
RTF1-204ENST00000558117 SBNO2Q9Y2G9 1366 aa7.75□□□□□ -1.17
RTF1-204ENST00000558117 A0A1W2PPC1 479 aa7.75□□□□□ -1.17
RTF1-204ENST00000558117 GOLGA6L22H0YM25 854 aa7.75□□□□□ -1.17
RTF1-204ENST00000558117 GAS7O60861 476 aa7.75□□□□□ -1.17
RTF1-204ENST00000558117 KLHL18O94889 574 aa7.75□□□□□ -1.17
RTF1-204ENST00000558117 HMGB1P09429 215 aaKnown RBP7.75□□□□□ -1.17
RTF1-204ENST00000558117 SURF1Q15526 300 aa7.75□□□□□ -1.17
RTF1-204ENST00000558117 ZNF662Q6ZS27 426 aa7.75□□□□□ -1.17
RTF1-204ENST00000558117 Q7L0L9 218 aa7.75□□□□□ -1.17
RTF1-204ENST00000558117 STRA8Q7Z7C7 330 aa7.75□□□□□ -1.17
RTF1-204ENST00000558117 RALYLQ86SE5 291 aaKnown RBP7.75□□□□□ -1.17
RTF1-204ENST00000558117 FOXRED1Q96CU9 486 aaPredicted RBP7.75□□□□□ -1.17
RTF1-204ENST00000558117 BDH2Q9BUT1 245 aa7.75□□□□□ -1.17
RTF1-204ENST00000558117 XPO5Q9HAV4 1204 aaKnown RBP eCLIP7.75□□□□□ -1.17
RTF1-204ENST00000558117 MTMR10Q9NXD2 777 aa7.75□□□□□ -1.17
RTF1-204ENST00000558117 INVSQ9Y283 1065 aa7.75□□□□□ -1.17
RTF1-204ENST00000558117 DUSP10Q9Y6W6 482 aa7.75□□□□□ -1.17
RTF1-204ENST00000558117 ITGB4P16144 1822 aa7.75□□□□□ -1.17
RTF1-204ENST00000558117 RBBP6Q7Z6E9 1792 aaKnown RBP7.74□□□□□ -1.17
RTF1-204ENST00000558117 PRICKLE3O43900 615 aaPredicted RBP7.74□□□□□ -1.17
RTF1-204ENST00000558117 FOXD2O60548 495 aaPredicted RBP7.74□□□□□ -1.17
RTF1-204ENST00000558117 SERPINB2P05120 415 aa7.74□□□□□ -1.17
RTF1-204ENST00000558117 SCNN1BP51168 640 aa7.74□□□□□ -1.17
RTF1-204ENST00000558117 Q6ZUG5 572 aa7.74□□□□□ -1.17
RTF1-204ENST00000558117 RTN4RL1Q86UN2 441 aaPredicted RBP7.74□□□□□ -1.17
RTF1-204ENST00000558117 REXO1L1PQ8IX06 675 aa7.74□□□□□ -1.17
RTF1-204ENST00000558117 IFNL2Q8IZJ0 200 aa7.74□□□□□ -1.17
RTF1-204ENST00000558117 CALML6Q8TD86 181 aa7.74□□□□□ -1.17
RTF1-204ENST00000558117 ACSS2Q9NR19 701 aa7.74□□□□□ -1.17
RTF1-204ENST00000558117 ZNF277Q9NRM2 450 aaPredicted RBP7.74□□□□□ -1.17
RTF1-204ENST00000558117 NRXN2Q9P2S2 1712 aa7.74□□□□□ -1.17
RTF1-204ENST00000558117 ZNF536O15090 1300 aa7.74□□□□□ -1.17
RTF1-204ENST00000558117 LAMB4A4D0S4 1761 aa7.74□□□□□ -1.17
RTF1-204ENST00000558117 CUTAO60888 179 aa7.73□□□□□ -1.17
RTF1-204ENST00000558117 CELA3BP08861 270 aa7.73□□□□□ -1.17
RTF1-204ENST00000558117 STAT3P40763 770 aa7.73□□□□□ -1.17
RTF1-204ENST00000558117 IL13RA1P78552 427 aa7.73□□□□□ -1.17
RTF1-204ENST00000558117 ZNF568Q3ZCX4 644 aa7.73□□□□□ -1.17
RTF1-204ENST00000558117 KBTBD2Q8IY47 623 aa7.73□□□□□ -1.17
RTF1-204ENST00000558117 OR2W6PQ8NHA6 318 aa7.73□□□□□ -1.17
RTF1-204ENST00000558117 RAPGEF4Q8WZA2 1011 aa7.73□□□□□ -1.17
RTF1-204ENST00000558117 E2F7Q96AV8 911 aa7.73□□□□□ -1.17
RTF1-204ENST00000558117 PUS7Q96PZ0 661 aaKnown RBP7.73□□□□□ -1.17
RTF1-204ENST00000558117 BTBD2Q9BX70 525 aa7.73□□□□□ -1.17
RTF1-204ENST00000558117 SPTLC3Q9NUV7 552 aa7.73□□□□□ -1.17
RTF1-204ENST00000558117 PGAP2Q9UHJ9 254 aa7.73□□□□□ -1.17
RTF1-204ENST00000558117 FBXO10Q9UK96 956 aa7.73□□□□□ -1.17
RTF1-204ENST00000558117 ADAM29Q9UKF5 820 aa7.73□□□□□ -1.17
RTF1-204ENST00000558117 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.73□□□□□ -1.17
RTF1-204ENST00000558117 SPO11Q9Y5K1 396 aa7.73□□□□□ -1.17
RTF1-204ENST00000558117 LTN1O94822 1766 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms