RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 MYOZ2Q9NPC6 264 aa15.9■□□□□ 0.14
CUX1-215ENST00000556210 ANAPC5Q9UJX4 755 aa15.9■□□□□ 0.14
CUX1-215ENST00000556210 TRAF3IP3Q9Y228 551 aa15.9■□□□□ 0.14
CUX1-215ENST00000556210 PLS3P13797 630 aa15.9■□□□□ 0.14
CUX1-215ENST00000556210 PMS2P54278 862 aa15.9■□□□□ 0.14
CUX1-215ENST00000556210 ZBTB16Q05516 673 aa15.9■□□□□ 0.14
CUX1-215ENST00000556210 IRF2BP2Q7Z5L9 587 aa15.9■□□□□ 0.14
CUX1-215ENST00000556210 CTAGE3PQ8IX95 158 aa15.9■□□□□ 0.14
CUX1-215ENST00000556210 IDI2Q9BXS1 227 aa15.9■□□□□ 0.14
CUX1-215ENST00000556210 CALN1Q9BXU9 219 aa15.9■□□□□ 0.14
CUX1-215ENST00000556210 GANQ9H2C0 597 aa15.9■□□□□ 0.14
CUX1-215ENST00000556210 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.9■□□□□ 0.14
CUX1-215ENST00000556210 LAMA4Q16363 1823 aa15.89■□□□□ 0.13
CUX1-215ENST00000556210 AKAP11Q9UKA4 1901 aa15.89■□□□□ 0.13
CUX1-215ENST00000556210 F5H423 210 aaPredicted RBP15.89■□□□□ 0.13
CUX1-215ENST00000556210 WNT10BO00744 389 aa15.89■□□□□ 0.13
CUX1-215ENST00000556210 ATP2A1O14983 1001 aa15.89■□□□□ 0.13
CUX1-215ENST00000556210 PSAPP07602 524 aa15.89■□□□□ 0.13
CUX1-215ENST00000556210 PPP2R5DQ14738 602 aa15.89■□□□□ 0.13
CUX1-215ENST00000556210 TMED2Q15363 201 aa15.89■□□□□ 0.13
CUX1-215ENST00000556210 Q4G0T1 1027 aa15.89■□□□□ 0.13
CUX1-215ENST00000556210 C15orf52Q6ZUT6 534 aaKnown RBP15.89■□□□□ 0.13
CUX1-215ENST00000556210 SESTD1Q86VW0 696 aa15.89■□□□□ 0.13
CUX1-215ENST00000556210 MAK16Q9BXY0 300 aaKnown RBP15.89■□□□□ 0.13
CUX1-215ENST00000556210 DUOX1Q9NRD9 1551 aa15.89■□□□□ 0.13
CUX1-215ENST00000556210 NUP98P52948 1817 aa15.89■□□□□ 0.13
CUX1-215ENST00000556210 ANGEL2Q5VTE6 544 aaKnown RBP15.89■□□□□ 0.13
CUX1-215ENST00000556210 C1orf186Q6ZWK4 172 aa15.89■□□□□ 0.13
CUX1-215ENST00000556210 SRRM1Q8IYB3 904 aaKnown RBP15.89■□□□□ 0.13
CUX1-215ENST00000556210 LBHD1Q9BQE6 289 aaPredicted RBP15.89■□□□□ 0.13
CUX1-215ENST00000556210 RAB20Q9NX57 234 aa15.89■□□□□ 0.13
CUX1-215ENST00000556210 LRP6O75581 1613 aa15.89■□□□□ 0.13
CUX1-215ENST00000556210 YDJCA8MPS7 323 aa15.89■□□□□ 0.13
CUX1-215ENST00000556210 DKC1O60832 514 aaKnown RBP eCLIP15.89■□□□□ 0.131e-7■■■■■ 38.7
CUX1-215ENST00000556210 NEBLO76041 1014 aa15.89■□□□□ 0.13
CUX1-215ENST00000556210 SLC15A2Q16348 729 aa15.89■□□□□ 0.13
CUX1-215ENST00000556210 JAMLQ86YT9 394 aa15.89■□□□□ 0.13
CUX1-215ENST00000556210 LRRC71Q8N4P6 559 aa15.89■□□□□ 0.13
CUX1-215ENST00000556210 CCDC63Q8NA47 563 aa15.89■□□□□ 0.13
CUX1-215ENST00000556210 CSADQ9Y600 493 aa15.89■□□□□ 0.13
CUX1-215ENST00000556210 SLC16A3O15427 465 aaKnown RBP15.88■□□□□ 0.13
CUX1-215ENST00000556210 RARRES1P49788 294 aa15.88■□□□□ 0.13
CUX1-215ENST00000556210 TTMPQ5BVD1 217 aa15.88■□□□□ 0.13
CUX1-215ENST00000556210 CCDC89Q8N998 374 aa15.88■□□□□ 0.13
CUX1-215ENST00000556210 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.88■□□□□ 0.13
CUX1-215ENST00000556210 NSUN6Q8TEA1 469 aaKnown RBP15.88■□□□□ 0.13
CUX1-215ENST00000556210 AS3MTQ9HBK9 375 aa15.88■□□□□ 0.13
CUX1-215ENST00000556210 MAGED2Q9UNF1 606 aaPredicted RBP15.88■□□□□ 0.13
CUX1-215ENST00000556210 NR2E1Q9Y466 385 aa15.88■□□□□ 0.13
CUX1-215ENST00000556210 AGPSO00116 658 aa15.88■□□□□ 0.13
CUX1-215ENST00000556210 FLT3P36888 993 aa15.88■□□□□ 0.13
CUX1-215ENST00000556210 PTGISQ16647 500 aa15.88■□□□□ 0.13
CUX1-215ENST00000556210 Q3C1V9 767 aa15.88■□□□□ 0.13
CUX1-215ENST00000556210 FAM182AQ5T1J6 154 aa15.88■□□□□ 0.13
CUX1-215ENST00000556210 NUGGCQ68CJ6 796 aa15.88■□□□□ 0.13
CUX1-215ENST00000556210 SYN2Q92777 582 aaPredicted RBP15.88■□□□□ 0.13
CUX1-215ENST00000556210 STMN4Q9H169 189 aaPredicted RBP15.88■□□□□ 0.13
CUX1-215ENST00000556210 BCL9LQ86UU0 1499 aa15.88■□□□□ 0.13
CUX1-215ENST00000556210 SPEF2Q9C093 1822 aa15.88■□□□□ 0.13
CUX1-215ENST00000556210 KRT1P04264 644 aa15.88■□□□□ 0.13
CUX1-215ENST00000556210 NPTX2P47972 431 aa15.88■□□□□ 0.13
CUX1-215ENST00000556210 CCDC197Q8NCU1 140 aa15.88■□□□□ 0.13
CUX1-215ENST00000556210 SYTL5Q8TDW5 730 aaPredicted RBP15.88■□□□□ 0.13
CUX1-215ENST00000556210 RBAKQ9NYW8 714 aaPredicted RBP15.88■□□□□ 0.13
CUX1-215ENST00000556210 WRAP73Q9P2S5 460 aaPredicted RBP15.88■□□□□ 0.13
CUX1-215ENST00000556210 ZNF772Q68DY9 489 aaPredicted RBP15.87■□□□□ 0.13
CUX1-215ENST00000556210 TAOK1Q7L7X3 1001 aa15.87■□□□□ 0.13
CUX1-215ENST00000556210 VSIG1Q86XK7 387 aa15.87■□□□□ 0.13
CUX1-215ENST00000556210 SIAH1Q8IUQ4 282 aa15.87■□□□□ 0.13
CUX1-215ENST00000556210 LNX1Q8TBB1 728 aaPredicted RBP15.87■□□□□ 0.13
CUX1-215ENST00000556210 MYCBPAPQ8TBZ2 947 aa15.87■□□□□ 0.13
CUX1-215ENST00000556210 PSMD1Q99460 953 aa15.87■□□□□ 0.13
CUX1-215ENST00000556210 IQCGQ9H095 443 aaKnown RBP15.87■□□□□ 0.13
CUX1-215ENST00000556210 ROBO3Q96MS0 1386 aa15.87■□□□□ 0.13
CUX1-215ENST00000556210 SLIT2O94813 1529 aa15.87■□□□□ 0.13
CUX1-215ENST00000556210 ANKRD63C9JTQ0 380 aa15.87■□□□□ 0.13
CUX1-215ENST00000556210 WEE2P0C1S8 567 aa15.87■□□□□ 0.13
CUX1-215ENST00000556210 GMPSP49915 693 aaPredicted RBP15.87■□□□□ 0.13
CUX1-215ENST00000556210 KYNUQ16719 465 aa15.87■□□□□ 0.13
CUX1-215ENST00000556210 C7orf31Q8N865 590 aa15.87■□□□□ 0.13
CUX1-215ENST00000556210 GMCL1P1Q8NEA9 526 aa15.87■□□□□ 0.13
CUX1-215ENST00000556210 HSD17B14Q9BPX1 270 aa15.87■□□□□ 0.13
CUX1-215ENST00000556210 ACTR5Q9H9F9 607 aaPredicted RBP15.87■□□□□ 0.13
CUX1-215ENST00000556210 JPH1Q9HDC5 661 aaPredicted RBP15.87■□□□□ 0.13
CUX1-215ENST00000556210 AGO2Q9UKV8 859 aaKnown RBP15.87■□□□□ 0.13
CUX1-215ENST00000556210 NWD2Q9ULI1 1742 aa15.87■□□□□ 0.13
CUX1-215ENST00000556210 TLR3O15455 904 aaKnown RBP15.87■□□□□ 0.13
CUX1-215ENST00000556210 KRT76Q01546 638 aa15.87■□□□□ 0.13
CUX1-215ENST00000556210 PRKCEQ02156 737 aa15.87■□□□□ 0.13
CUX1-215ENST00000556210 ZCWPW2Q504Y3 356 aa15.87■□□□□ 0.13
CUX1-215ENST00000556210 MIS18BP1Q6P0N0 1132 aa15.87■□□□□ 0.13
CUX1-215ENST00000556210 RHPN2Q8IUC4 686 aa15.87■□□□□ 0.13
CUX1-215ENST00000556210 MKL1Q969V6 931 aa15.87■□□□□ 0.13
CUX1-215ENST00000556210 PSMD10O75832 226 aa15.86■□□□□ 0.13
CUX1-215ENST00000556210 PPP2R2AP63151 447 aa15.86■□□□□ 0.13
CUX1-215ENST00000556210 OTUD5Q96G74 571 aa15.86■□□□□ 0.13
CUX1-215ENST00000556210 ZBTB45Q96K62 511 aaPredicted RBP15.86■□□□□ 0.13
CUX1-215ENST00000556210 GEMIN8Q9NWZ8 242 aaKnown RBP15.86■□□□□ 0.13
CUX1-215ENST00000556210 MYH8P13535 1937 aa15.86■□□□□ 0.13
CUX1-215ENST00000556210 MAP3K6O95382 1288 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms