RNA–Protein interactions for RNA: ENST00000554997.1

SYNE2-215, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 711 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-215ENST00000554997 C9IYK1 514 aa11.14□□□□□ -0.63
SYNE2-215ENST00000554997 EFCAB14O75071 495 aa11.14□□□□□ -0.63
SYNE2-215ENST00000554997 BAIAP3O94812 1187 aa11.14□□□□□ -0.63
SYNE2-215ENST00000554997 EOMESO95936 686 aa11.14□□□□□ -0.63
SYNE2-215ENST00000554997 LDHAP00338 332 aaKnown RBP11.14□□□□□ -0.63
SYNE2-215ENST00000554997 ACRP10323 421 aa11.14□□□□□ -0.63
SYNE2-215ENST00000554997 ACTN1P12814 892 aa11.14□□□□□ -0.63
SYNE2-215ENST00000554997 PMS1P54277 932 aaKnown RBP11.14□□□□□ -0.63
SYNE2-215ENST00000554997 ZNF445P59923 1031 aa11.14□□□□□ -0.63
SYNE2-215ENST00000554997 FKBP3Q00688 224 aaKnown RBP11.14□□□□□ -0.63
SYNE2-215ENST00000554997 POU5F1Q01860 360 aaKnown RBP11.14□□□□□ -0.63
SYNE2-215ENST00000554997 PAK1Q13153 545 aa11.14□□□□□ -0.63
SYNE2-215ENST00000554997 DCAF4L1Q3SXM0 396 aa11.14□□□□□ -0.63
SYNE2-215ENST00000554997 KLHL10Q6JEL2 608 aa11.14□□□□□ -0.63
SYNE2-215ENST00000554997 TTI2Q6NXR4 508 aa11.14□□□□□ -0.63
SYNE2-215ENST00000554997 LRSAM1Q6UWE0 723 aa11.14□□□□□ -0.63
SYNE2-215ENST00000554997 ZNF365Q70YC5 407 aa11.14□□□□□ -0.63
SYNE2-215ENST00000554997 ZBTB33Q86T24 672 aa11.14□□□□□ -0.63
SYNE2-215ENST00000554997 CDR2LQ86X02 465 aaPredicted RBP11.14□□□□□ -0.63
SYNE2-215ENST00000554997 ENOX1Q8TC92 643 aaKnown RBP11.14□□□□□ -0.63
SYNE2-215ENST00000554997 TSG101Q99816 390 aa11.14□□□□□ -0.63
SYNE2-215ENST00000554997 BPIFA3Q9BQP9 254 aa11.14□□□□□ -0.63
SYNE2-215ENST00000554997 EIF2AQ9BY44 585 aaKnown RBP11.14□□□□□ -0.63
SYNE2-215ENST00000554997 HAPLN2Q9GZV7 340 aa11.14□□□□□ -0.63
SYNE2-215ENST00000554997 KIAA1586Q9HCI6 787 aa11.14□□□□□ -0.63
SYNE2-215ENST00000554997 FAM105AQ9NUU6 356 aa11.14□□□□□ -0.63
SYNE2-215ENST00000554997 AGO2Q9UKV8 859 aaKnown RBP11.14□□□□□ -0.63
SYNE2-215ENST00000554997 PCDHB2Q9Y5E7 798 aa11.14□□□□□ -0.63
SYNE2-215ENST00000554997 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.13□□□□□ -0.63
SYNE2-215ENST00000554997 RBAK-RBAKDNI3L0D1 243 aa11.13□□□□□ -0.63
SYNE2-215ENST00000554997 CLIC2O15247 247 aa11.13□□□□□ -0.63
SYNE2-215ENST00000554997 OGTO15294 1046 aa11.13□□□□□ -0.63
SYNE2-215ENST00000554997 ABCB7O75027 752 aa11.13□□□□□ -0.63
SYNE2-215ENST00000554997 NPTXRO95502 500 aa11.13□□□□□ -0.63
SYNE2-215ENST00000554997 NR3C1P04150 777 aa11.13□□□□□ -0.63
SYNE2-215ENST00000554997 GRM5P41594 1212 aa11.13□□□□□ -0.63
SYNE2-215ENST00000554997 MATR3P43243 847 aaKnown RBP eCLIP11.13□□□□□ -0.63
SYNE2-215ENST00000554997 RAB27AP51159 221 aa11.13□□□□□ -0.63
SYNE2-215ENST00000554997 EPHB4P54760 987 aa11.13□□□□□ -0.63
SYNE2-215ENST00000554997 STX17P56962 302 aa11.13□□□□□ -0.63
SYNE2-215ENST00000554997 HSP90AA2PQ14568 343 aaPredicted RBP11.13□□□□□ -0.63
SYNE2-215ENST00000554997 NOLC1Q14978 699 aaKnown RBP eCLIP11.13□□□□□ -0.63
SYNE2-215ENST00000554997 ZNF568Q3ZCX4 644 aa11.13□□□□□ -0.63
SYNE2-215ENST00000554997 ANO6Q4KMQ2 910 aa11.13□□□□□ -0.63
SYNE2-215ENST00000554997 TMEM240Q5SV17 173 aa11.13□□□□□ -0.63
SYNE2-215ENST00000554997 ARMCX5Q6P1M9 558 aa11.13□□□□□ -0.63
SYNE2-215ENST00000554997 PSRC1Q6PGN9 363 aaPredicted RBP11.13□□□□□ -0.63
SYNE2-215ENST00000554997 CRIPAKQ8N1N5 446 aa11.13□□□□□ -0.63
SYNE2-215ENST00000554997 XXYLT1Q8NBI6 393 aa11.13□□□□□ -0.63
SYNE2-215ENST00000554997 SMG8Q8ND04 991 aaKnown RBP11.13□□□□□ -0.63
SYNE2-215ENST00000554997 PGBD4Q96DM1 585 aa11.13□□□□□ -0.63
SYNE2-215ENST00000554997 FBXL18Q96ME1 805 aa11.13□□□□□ -0.63
SYNE2-215ENST00000554997 DUSP9Q99956 384 aaKnown RBP11.13□□□□□ -0.63
SYNE2-215ENST00000554997 CBWD1Q9BRT8 395 aa11.13□□□□□ -0.63
SYNE2-215ENST00000554997 MSTO1Q9BUK6 570 aa11.13□□□□□ -0.63
SYNE2-215ENST00000554997 TRIM6Q9C030 488 aaPredicted RBP11.13□□□□□ -0.63
SYNE2-215ENST00000554997 DNAJC25Q9H1X3 360 aa11.13□□□□□ -0.63
SYNE2-215ENST00000554997 CDT1Q9H211 546 aa11.13□□□□□ -0.63
SYNE2-215ENST00000554997 PCIF1Q9H4Z3 704 aa11.13□□□□□ -0.63
SYNE2-215ENST00000554997 ELAC1Q9H777 363 aaKnown RBP11.13□□□□□ -0.63
SYNE2-215ENST00000554997 UBN1Q9NPG3 1134 aa11.13□□□□□ -0.63
SYNE2-215ENST00000554997 HSPBP1Q9NZL4 362 aa11.13□□□□□ -0.63
SYNE2-215ENST00000554997 ANKFY1Q9P2R3 1169 aa11.13□□□□□ -0.63
SYNE2-215ENST00000554997 TRIM49BA6NDI0 452 aa11.12□□□□□ -0.63
SYNE2-215ENST00000554997 ZNF233A6NK53 670 aa11.12□□□□□ -0.63
SYNE2-215ENST00000554997 H0YGN5 161 aa11.12□□□□□ -0.63
SYNE2-215ENST00000554997 CETN3O15182 167 aa11.12□□□□□ -0.63
SYNE2-215ENST00000554997 EXTL3O43909 919 aa11.12□□□□□ -0.63
SYNE2-215ENST00000554997 FAM189A1O60320 539 aa11.12□□□□□ -0.63
SYNE2-215ENST00000554997 EXOC3O60645 756 aa11.12□□□□□ -0.63
SYNE2-215ENST00000554997 FGFR1OPO95684 399 aaKnown RBP11.12□□□□□ -0.63
SYNE2-215ENST00000554997 CLTAP09496 248 aa11.12□□□□□ -0.63
SYNE2-215ENST00000554997 STAG3L1P0CL83 205 aa11.12□□□□□ -0.63
SYNE2-215ENST00000554997 NR2F2P24468 414 aa11.12□□□□□ -0.63
SYNE2-215ENST00000554997 ZNF165P49910 485 aa11.12□□□□□ -0.63
SYNE2-215ENST00000554997 MCCD1P59942 119 aaPredicted RBP11.12□□□□□ -0.63
SYNE2-215ENST00000554997 SPATA1Q5VX52 437 aa11.12□□□□□ -0.63
SYNE2-215ENST00000554997 CRELD2Q6UXH1 353 aaPredicted RBP11.12□□□□□ -0.63
SYNE2-215ENST00000554997 C11orf57Q6ZUT1 292 aaPredicted RBP11.12□□□□□ -0.63
SYNE2-215ENST00000554997 OTOP2Q7RTS6 562 aa11.12□□□□□ -0.63
SYNE2-215ENST00000554997 FILIP1Q7Z7B0 1213 aa11.12□□□□□ -0.63
SYNE2-215ENST00000554997 ZNF598Q86UK7 904 aaKnown RBP11.12□□□□□ -0.63
SYNE2-215ENST00000554997 ECHDC2Q86YB7 292 aa11.12□□□□□ -0.63
SYNE2-215ENST00000554997 ZC3H3Q8IXZ2 948 aaKnown RBP11.12□□□□□ -0.63
SYNE2-215ENST00000554997 THNSL1Q8IYQ7 743 aa11.12□□□□□ -0.63
SYNE2-215ENST00000554997 GPD1LQ8N335 351 aa11.12□□□□□ -0.63
SYNE2-215ENST00000554997 CSGALNACT2Q8N6G5 542 aa11.12□□□□□ -0.63
SYNE2-215ENST00000554997 LINC01599Q8WXQ3 324 aa11.12□□□□□ -0.63
SYNE2-215ENST00000554997 HERVK_113Q902F9 699 aa11.12□□□□□ -0.63
SYNE2-215ENST00000554997 TOP1MTQ969P6 601 aa11.12□□□□□ -0.63
SYNE2-215ENST00000554997 CEP63Q96MT8 703 aa11.12□□□□□ -0.63
SYNE2-215ENST00000554997 ACAP3Q96P50 834 aa11.12□□□□□ -0.63
SYNE2-215ENST00000554997 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.12□□□□□ -0.63
SYNE2-215ENST00000554997 SRRTQ9BXP5 876 aaKnown RBP11.12□□□□□ -0.63
SYNE2-215ENST00000554997 TMEM161AQ9NX61 479 aa11.12□□□□□ -0.63
SYNE2-215ENST00000554997 CPSF3Q9UKF6 684 aaKnown RBP11.12□□□□□ -0.63
SYNE2-215ENST00000554997 CTNND2Q9UQB3 1225 aa11.12□□□□□ -0.63
SYNE2-215ENST00000554997 FRMD4BQ9Y2L6 1034 aa11.12□□□□□ -0.63
SYNE2-215ENST00000554997 IPPQ9Y573 584 aa11.12□□□□□ -0.63
SYNE2-215ENST00000554997 PCDHB7Q9Y5E2 793 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms