RNA–Protein interactions for RNA: ENST00000553605.1

PRPF39-204, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-204ENST00000553605 PPM1LQ5SGD2 360 aa15.5■□□□□ 0.07
PRPF39-204ENST00000553605 UBXN11Q5T124 520 aa15.5■□□□□ 0.07
PRPF39-204ENST00000553605 LIN9Q5TKA1 542 aa15.5■□□□□ 0.07
PRPF39-204ENST00000553605 FUT10Q6P4F1 479 aa15.5■□□□□ 0.07
PRPF39-204ENST00000553605 ZNF687Q8N1G0 1237 aa15.5■□□□□ 0.07
PRPF39-204ENST00000553605 CEP89Q96ST8 783 aa15.5■□□□□ 0.07
PRPF39-204ENST00000553605 SH2D3AQ9BRG2 576 aa15.5■□□□□ 0.07
PRPF39-204ENST00000553605 IER2Q9BTL4 223 aa15.5■□□□□ 0.07
PRPF39-204ENST00000553605 IFT122Q9HBG6 1241 aa15.5■□□□□ 0.07
PRPF39-204ENST00000553605 BARHL2Q9NY43 387 aa15.5■□□□□ 0.07
PRPF39-204ENST00000553605 SEPT9Q9UHD8 586 aaPredicted RBP15.5■□□□□ 0.07
PRPF39-204ENST00000553605 FBXW11Q9UKB1 542 aa15.5■□□□□ 0.07
PRPF39-204ENST00000553605 CNOT1A5YKK6 2376 aaKnown RBP15.5■□□□□ 0.07
PRPF39-204ENST00000553605 ARL5CA6NH57 179 aa15.49■□□□□ 0.07
PRPF39-204ENST00000553605 C1QTNF9BB2RNN3 333 aa15.49■□□□□ 0.07
PRPF39-204ENST00000553605 hCG_1984214I3L0E3 225 aa15.49■□□□□ 0.07
PRPF39-204ENST00000553605 MAN2B1O00754 1011 aa15.49■□□□□ 0.07
PRPF39-204ENST00000553605 CCL16O15467 120 aa15.49■□□□□ 0.07
PRPF39-204ENST00000553605 XYLBO75191 536 aa15.49■□□□□ 0.07
PRPF39-204ENST00000553605 ECI2O75521 394 aa15.49■□□□□ 0.07
PRPF39-204ENST00000553605 C8AP07357 584 aa15.49■□□□□ 0.07
PRPF39-204ENST00000553605 C1QTNF9P0C862 333 aa15.49■□□□□ 0.07
PRPF39-204ENST00000553605 HOXA11P31270 313 aaPredicted RBP15.49■□□□□ 0.07
PRPF39-204ENST00000553605 AASDHQ4L235 1098 aaPredicted RBP15.49■□□□□ 0.07
PRPF39-204ENST00000553605 NPAS3Q8IXF0 933 aa15.49■□□□□ 0.07
PRPF39-204ENST00000553605 SMC5Q8IY18 1101 aa15.49■□□□□ 0.07
PRPF39-204ENST00000553605 ZNF713Q8N859 430 aaPredicted RBP15.49■□□□□ 0.07
PRPF39-204ENST00000553605 CNNM3Q8NE01 707 aa15.49■□□□□ 0.07
PRPF39-204ENST00000553605 RUFY2Q8WXA3 655 aa15.49■□□□□ 0.07
PRPF39-204ENST00000553605 GAD1Q99259 594 aa15.49■□□□□ 0.07
PRPF39-204ENST00000553605 PLA2G2FQ9BZM2 168 aa15.49■□□□□ 0.07
PRPF39-204ENST00000553605 MIOSQ9NXC5 875 aa15.49■□□□□ 0.07
PRPF39-204ENST00000553605 V9GY48 417 aaPredicted RBP15.49■□□□□ 0.07
PRPF39-204ENST00000553605 RALGAPA1Q6GYQ0 2036 aa15.49■□□□□ 0.07
PRPF39-204ENST00000553605 WDR81Q562E7 1941 aa15.49■□□□□ 0.07
PRPF39-204ENST00000553605 CNTNAP5Q8WYK1 1306 aa15.48■□□□□ 0.07
PRPF39-204ENST00000553605 TMEM150BA6NC51 233 aa15.48■□□□□ 0.07
PRPF39-204ENST00000553605 CHMP2AO43633 222 aa15.48■□□□□ 0.07
PRPF39-204ENST00000553605 MAFO75444 373 aaPredicted RBP15.48■□□□□ 0.07
PRPF39-204ENST00000553605 HOXA9P31269 272 aa15.48■□□□□ 0.07
PRPF39-204ENST00000553605 SFNP31947 248 aa15.48■□□□□ 0.07
PRPF39-204ENST00000553605 CNR2P34972 360 aa15.48■□□□□ 0.07
PRPF39-204ENST00000553605 MLH1P40692 756 aa15.48■□□□□ 0.07
PRPF39-204ENST00000553605 CXCL12P48061 93 aa15.48■□□□□ 0.07
PRPF39-204ENST00000553605 SRSF5Q13243 272 aaKnown RBP15.48■□□□□ 0.07
PRPF39-204ENST00000553605 XKR3Q5GH77 459 aa15.48■□□□□ 0.07
PRPF39-204ENST00000553605 PRSS55Q6UWB4 352 aaPredicted RBP15.48■□□□□ 0.07
PRPF39-204ENST00000553605 UNQ6494/PRO21346Q6UXR6 183 aa15.48■□□□□ 0.07
PRPF39-204ENST00000553605 MICU3Q86XE3 530 aa15.48■□□□□ 0.07
PRPF39-204ENST00000553605 SMG8Q8ND04 991 aaKnown RBP15.48■□□□□ 0.07
PRPF39-204ENST00000553605 MAP4K1Q92918 833 aa15.48■□□□□ 0.07
PRPF39-204ENST00000553605 LMAN1LQ9HAT1 526 aa15.48■□□□□ 0.07
PRPF39-204ENST00000553605 KCNH3Q9ULD8 1083 aa15.48■□□□□ 0.07
PRPF39-204ENST00000553605 SOBPA7XYQ1 873 aa15.47■□□□□ 0.07
PRPF39-204ENST00000553605 CHURC1-FNTBB4DL54 471 aa15.47■□□□□ 0.07
PRPF39-204ENST00000553605 STBD1O95210 358 aa15.47■□□□□ 0.07
PRPF39-204ENST00000553605 FNTBP49356 437 aa15.47■□□□□ 0.07
PRPF39-204ENST00000553605 SCNN1GP51170 649 aa15.47■□□□□ 0.07
PRPF39-204ENST00000553605 JAK3P52333 1124 aa15.47■□□□□ 0.07
PRPF39-204ENST00000553605 SATB1Q01826 763 aa15.47■□□□□ 0.07
PRPF39-204ENST00000553605 NUCB1Q02818 461 aa15.47■□□□□ 0.07
PRPF39-204ENST00000553605 KDF1Q8NAX2 398 aaPredicted RBP15.47■□□□□ 0.07
PRPF39-204ENST00000553605 ING5Q8WYH8 240 aa15.47■□□□□ 0.07
PRPF39-204ENST00000553605 DNASE1L2Q92874 299 aa15.47■□□□□ 0.07
PRPF39-204ENST00000553605 MCRS1Q96EZ8 462 aa15.47■□□□□ 0.07
PRPF39-204ENST00000553605 CEP295Q9C0D2 2601 aa15.47■□□□□ 0.07
PRPF39-204ENST00000553605 RNF39Q9H2S5 420 aa15.47■□□□□ 0.07
PRPF39-204ENST00000553605 HCFC1R1Q9NWW0 138 aa15.47■□□□□ 0.07
PRPF39-204ENST00000553605 ADAM28Q9UKQ2 775 aa15.47■□□□□ 0.07
PRPF39-204ENST00000553605 IPPQ9Y573 584 aa15.47■□□□□ 0.07
PRPF39-204ENST00000553605 TADA2AO75478 443 aa15.46■□□□□ 0.07
PRPF39-204ENST00000553605 KCNK5O95279 499 aa15.46■□□□□ 0.07
PRPF39-204ENST00000553605 CIITAP33076 1130 aa15.46■□□□□ 0.07
PRPF39-204ENST00000553605 SF3A2Q15428 464 aaKnown RBP15.46■□□□□ 0.07
PRPF39-204ENST00000553605 PABPC1LQ4VXU2 614 aaKnown RBP15.46■□□□□ 0.07
PRPF39-204ENST00000553605 RTP2Q5QGT7 225 aa15.46■□□□□ 0.07
PRPF39-204ENST00000553605 TANGO2Q6ICL3 276 aa15.46■□□□□ 0.07
PRPF39-204ENST00000553605 SYNE3Q6ZMZ3 975 aa15.46■□□□□ 0.07
PRPF39-204ENST00000553605 SRGAP1Q7Z6B7 1085 aa15.46■□□□□ 0.07
PRPF39-204ENST00000553605 FAM160A2Q8N612 972 aaPredicted RBP15.46■□□□□ 0.07
PRPF39-204ENST00000553605 C12orf50Q8NA57 414 aaPredicted RBP15.46■□□□□ 0.07
PRPF39-204ENST00000553605 FAM3CQ92520 227 aa15.46■□□□□ 0.07
PRPF39-204ENST00000553605 LENG9Q96B70 501 aa15.46■□□□□ 0.07
PRPF39-204ENST00000553605 ZFP42Q96MM3 310 aa15.46■□□□□ 0.07
PRPF39-204ENST00000553605 RIT2Q99578 217 aa15.46■□□□□ 0.07
PRPF39-204ENST00000553605 CLSTN3Q9BQT9 956 aa15.46■□□□□ 0.07
PRPF39-204ENST00000553605 UNC45AQ9H3U1 944 aa15.46■□□□□ 0.07
PRPF39-204ENST00000553605 MINDY3Q9H8M7 445 aa15.46■□□□□ 0.07
PRPF39-204ENST00000553605 RBM28Q9NW13 759 aaKnown RBP15.46■□□□□ 0.07
PRPF39-204ENST00000553605 DNMT3BQ9UBC3 853 aaKnown RBP15.46■□□□□ 0.07
PRPF39-204ENST00000553605 MRPS23Q9Y3D9 190 aaKnown RBP15.46■□□□□ 0.07
PRPF39-204ENST00000553605 COL4A3BPQ9Y5P4 624 aa15.46■□□□□ 0.07
PRPF39-204ENST00000553605 ZFYVE26Q68DK2 2539 aa15.45■□□□□ 0.06
PRPF39-204ENST00000553605 DDX11L8A8MPP1 907 aa15.45■□□□□ 0.06
PRPF39-204ENST00000553605 MSH4O15457 936 aa15.45■□□□□ 0.06
PRPF39-204ENST00000553605 GAS7O60861 476 aa15.45■□□□□ 0.06
PRPF39-204ENST00000553605 SRGAP2CP0DJJ0 459 aa15.45■□□□□ 0.06
PRPF39-204ENST00000553605 FUT2Q10981 343 aa15.45■□□□□ 0.06
PRPF39-204ENST00000553605 STPG1Q5TH74 334 aa15.45■□□□□ 0.06
PRPF39-204ENST00000553605 LONP2Q86WA8 852 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms