RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 MIER3Q7Z3K6 550 aa14.48□□□□□ -0.09
VPS29-211ENST00000553128 CLDN23Q96B33 292 aa14.48□□□□□ -0.09
VPS29-211ENST00000553128 BORCS6Q96GS4 357 aa14.48□□□□□ -0.09
VPS29-211ENST00000553128 CCDC136Q96JN2 1154 aa14.48□□□□□ -0.09
VPS29-211ENST00000553128 MBOAT7Q96N66 472 aa14.48□□□□□ -0.09
VPS29-211ENST00000553128 RIT2Q99578 217 aa14.48□□□□□ -0.09
VPS29-211ENST00000553128 TEKT3Q9BXF9 490 aa14.48□□□□□ -0.09
VPS29-211ENST00000553128 FNIP2Q9P278 1114 aa14.48□□□□□ -0.09
VPS29-211ENST00000553128 IPPQ9Y573 584 aa14.48□□□□□ -0.09
VPS29-211ENST00000553128 COL4A3BPQ9Y5P4 624 aa14.48□□□□□ -0.09
VPS29-211ENST00000553128 ZFP37Q9Y6Q3 630 aaPredicted RBP14.48□□□□□ -0.09
VPS29-211ENST00000553128 BAHCC1Q9P281 2608 aa14.48□□□□□ -0.09
VPS29-211ENST00000553128 MTCL1Q9Y4B5 1905 aaKnown RBP14.48□□□□□ -0.09
VPS29-211ENST00000553128 SPEGQ15772 3267 aa14.47□□□□□ -0.09
VPS29-211ENST00000553128 CCL16O15467 120 aa14.47□□□□□ -0.09
VPS29-211ENST00000553128 TBC1D4O60343 1298 aa14.47□□□□□ -0.09
VPS29-211ENST00000553128 TDGF1P13385 188 aa14.47□□□□□ -0.09
VPS29-211ENST00000553128 ITGA4P13612 1032 aa14.47□□□□□ -0.09
VPS29-211ENST00000553128 NPEPPSP55786 919 aa14.47□□□□□ -0.09
VPS29-211ENST00000553128 EXOSC10Q01780 885 aaKnown RBP14.47□□□□□ -0.09
VPS29-211ENST00000553128 MTAPQ13126 283 aa14.47□□□□□ -0.09
VPS29-211ENST00000553128 AAMPQ13685 434 aa14.47□□□□□ -0.09
VPS29-211ENST00000553128 RTP2Q5QGT7 225 aa14.47□□□□□ -0.09
VPS29-211ENST00000553128 ZBTB41Q5SVQ8 909 aa14.47□□□□□ -0.09
VPS29-211ENST00000553128 FUT10Q6P4F1 479 aa14.47□□□□□ -0.09
VPS29-211ENST00000553128 POTEHQ6S545 545 aa14.47□□□□□ -0.09
VPS29-211ENST00000553128 B3GNT9Q6UX72 402 aa14.47□□□□□ -0.09
VPS29-211ENST00000553128 TPRG1Q6ZUI0 275 aa14.47□□□□□ -0.09
VPS29-211ENST00000553128 PRPF31Q8WWY3 499 aaKnown RBP14.47□□□□□ -0.09
VPS29-211ENST00000553128 TMEM143Q96AN5 459 aa14.47□□□□□ -0.09
VPS29-211ENST00000553128 PLA2G2FQ9BZM2 168 aa14.47□□□□□ -0.09
VPS29-211ENST00000553128 C6orf50Q9HD87 102 aa14.47□□□□□ -0.09
VPS29-211ENST00000553128 BMP2KQ9NSY1 1161 aaPredicted RBP14.47□□□□□ -0.09
VPS29-211ENST00000553128 FBXW11Q9UKB1 542 aa14.47□□□□□ -0.09
VPS29-211ENST00000553128 GMEB2Q9UKD1 530 aa14.47□□□□□ -0.09
VPS29-211ENST00000553128 KLF18A0A0U1RQI7 1052 aa14.46□□□□□ -0.09
VPS29-211ENST00000553128 LOC105378220A0A1B0GUY1 285 aaPredicted RBP14.46□□□□□ -0.09
VPS29-211ENST00000553128 SLC30A4O14863 429 aa14.46□□□□□ -0.09
VPS29-211ENST00000553128 GDF9O60383 454 aa14.46□□□□□ -0.09
VPS29-211ENST00000553128 C1RP00736 705 aa14.46□□□□□ -0.09
VPS29-211ENST00000553128 USP41Q3LFD5 358 aa14.46□□□□□ -0.09
VPS29-211ENST00000553128 MTSS1LQ765P7 747 aa14.46□□□□□ -0.09
VPS29-211ENST00000553128 GSTCDQ8NEC7 633 aa14.46□□□□□ -0.09
VPS29-211ENST00000553128 CPB2Q96IY4 423 aa14.46□□□□□ -0.09
VPS29-211ENST00000553128 APOL6Q9BWW8 343 aa14.46□□□□□ -0.09
VPS29-211ENST00000553128 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.46□□□□□ -0.09
VPS29-211ENST00000553128 HCFC1R1Q9NWW0 138 aa14.46□□□□□ -0.09
VPS29-211ENST00000553128 ADAM12O43184 909 aa14.45□□□□□ -0.1
VPS29-211ENST00000553128 MAGEA9P43362 315 aa14.45□□□□□ -0.1
VPS29-211ENST00000553128 RPS9P46781 194 aaKnown RBP14.45□□□□□ -0.1
VPS29-211ENST00000553128 RSPO2Q6UXX9 243 aaPredicted RBP14.45□□□□□ -0.1
VPS29-211ENST00000553128 NETO1Q8TDF5 533 aa14.45□□□□□ -0.1
VPS29-211ENST00000553128 ING5Q8WYH8 240 aa14.45□□□□□ -0.1
VPS29-211ENST00000553128 CLSTN3Q9BQT9 956 aa14.45□□□□□ -0.1
VPS29-211ENST00000553128 PAAF1Q9BRP4 392 aa14.45□□□□□ -0.1
VPS29-211ENST00000553128 PHF20Q9BVI0 1012 aa14.45□□□□□ -0.1
VPS29-211ENST00000553128 HEBP1Q9NRV9 189 aa14.45□□□□□ -0.1
VPS29-211ENST00000553128 WRAP73Q9P2S5 460 aaPredicted RBP14.45□□□□□ -0.1
VPS29-211ENST00000553128 ADAM28Q9UKQ2 775 aa14.45□□□□□ -0.1
VPS29-211ENST00000553128 POLIQ9UNA4 740 aa14.45□□□□□ -0.1
VPS29-211ENST00000553128 ZZEF1O43149 2961 aa14.45□□□□□ -0.1
VPS29-211ENST00000553128 WDFY3Q8IZQ1 3526 aa14.44□□□□□ -0.1
VPS29-211ENST00000553128 EML1O00423 815 aa14.44□□□□□ -0.1
VPS29-211ENST00000553128 TSPAN1O60635 241 aa14.44□□□□□ -0.1
VPS29-211ENST00000553128 TDP2O95551 362 aa14.44□□□□□ -0.1
VPS29-211ENST00000553128 C8AP07357 584 aa14.44□□□□□ -0.1
VPS29-211ENST00000553128 KCNA4P22459 653 aa14.44□□□□□ -0.1
VPS29-211ENST00000553128 AKAP5P24588 427 aa14.44□□□□□ -0.1
VPS29-211ENST00000553128 PFKPQ01813 784 aa14.44□□□□□ -0.1
VPS29-211ENST00000553128 LAMTOR4Q0VGL1 99 aa14.44□□□□□ -0.1
VPS29-211ENST00000553128 COL9A2Q14055 689 aaPredicted RBP14.44□□□□□ -0.1
VPS29-211ENST00000553128 ADCK5Q3MIX3 580 aa14.44□□□□□ -0.1
VPS29-211ENST00000553128 SRGAP1Q7Z6B7 1085 aa14.44□□□□□ -0.1
VPS29-211ENST00000553128 NPAS3Q8IXF0 933 aa14.44□□□□□ -0.1
VPS29-211ENST00000553128 ZNF687Q8N1G0 1237 aa14.44□□□□□ -0.1
VPS29-211ENST00000553128 RDM1Q8NG50 284 aa14.44□□□□□ -0.1
VPS29-211ENST00000553128 HASPINQ8TF76 798 aa14.44□□□□□ -0.1
VPS29-211ENST00000553128 COLEC11Q9BWP8 271 aa14.44□□□□□ -0.1
VPS29-211ENST00000553128 NXF3Q9H4D5 531 aaKnown RBP14.44□□□□□ -0.1
VPS29-211ENST00000553128 UBN1Q9NPG3 1134 aa14.44□□□□□ -0.1
VPS29-211ENST00000553128 NAP1L2Q9ULW6 460 aaPredicted RBP14.44□□□□□ -0.1
VPS29-211ENST00000553128 NOTCH4Q99466 2003 aa14.43□□□□□ -0.1
VPS29-211ENST00000553128 NRG2O14511 850 aaPredicted RBP14.43□□□□□ -0.1
VPS29-211ENST00000553128 PPM1LQ5SGD2 360 aa14.43□□□□□ -0.1
VPS29-211ENST00000553128 RNF149Q8NC42 400 aa14.43□□□□□ -0.1
VPS29-211ENST00000553128 CNNM3Q8NE01 707 aa14.43□□□□□ -0.1
VPS29-211ENST00000553128 SEMA4GQ9NTN9 838 aa14.43□□□□□ -0.1
VPS29-211ENST00000553128 DNMT3BQ9UBC3 853 aaKnown RBP14.43□□□□□ -0.1
VPS29-211ENST00000553128 NDRG2Q9UN36 371 aaKnown RBP14.43□□□□□ -0.1
VPS29-211ENST00000553128 NR1I2O75469 434 aa14.42□□□□□ -0.1
VPS29-211ENST00000553128 HNRNPA1P09651 372 aaKnown RBP eCLIP14.42□□□□□ -0.1
VPS29-211ENST00000553128 HOXB3P14651 431 aaPredicted RBP14.42□□□□□ -0.1
VPS29-211ENST00000553128 GNA11P29992 359 aa14.42□□□□□ -0.1
VPS29-211ENST00000553128 USP11P51784 963 aa14.42□□□□□ -0.1
VPS29-211ENST00000553128 ADCY1Q08828 1119 aa14.42□□□□□ -0.1
VPS29-211ENST00000553128 SRSF5Q13243 272 aaKnown RBP14.42□□□□□ -0.1
VPS29-211ENST00000553128 Q4G0T1 1027 aa14.42□□□□□ -0.1
VPS29-211ENST00000553128 LIN9Q5TKA1 542 aa14.42□□□□□ -0.1
VPS29-211ENST00000553128 LAIR1Q6GTX8 287 aa14.42□□□□□ -0.1
VPS29-211ENST00000553128 ZNF852Q6ZMS4 543 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms