RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 SASS6Q6UVJ0 657 aa23.17■■□□□ 1.3
VPS29-206ENST00000549578 TMCO2Q7Z6W1 182 aaPredicted RBP23.17■■□□□ 1.3
VPS29-206ENST00000549578 RNF169Q8NCN4 708 aa23.17■■□□□ 1.3
VPS29-206ENST00000549578 SMG8Q8ND04 991 aaKnown RBP23.17■■□□□ 1.3
VPS29-206ENST00000549578 MSTO1Q9BUK6 570 aa23.17■■□□□ 1.3
VPS29-206ENST00000549578 TYW1Q9NV66 732 aaKnown RBP23.17■■□□□ 1.3
VPS29-206ENST00000549578 TTC3P53804 2025 aa23.16■■□□□ 1.3
VPS29-206ENST00000549578 SYCE3A1L190 88 aa23.16■■□□□ 1.3
VPS29-206ENST00000549578 AMHP03971 560 aa23.16■■□□□ 1.3
VPS29-206ENST00000549578 RAB27AP51159 221 aa23.16■■□□□ 1.3
VPS29-206ENST00000549578 SEZ6Q53EL9 994 aa23.16■■□□□ 1.3
VPS29-206ENST00000549578 SLFN12LQ6IEE8 588 aa23.16■■□□□ 1.3
VPS29-206ENST00000549578 ARMCX5Q6P1M9 558 aa23.16■■□□□ 1.3
VPS29-206ENST00000549578 THNSL1Q8IYQ7 743 aa23.16■■□□□ 1.3
VPS29-206ENST00000549578 LPPQ93052 612 aa23.16■■□□□ 1.3
VPS29-206ENST00000549578 APOL6Q9BWW8 343 aa23.16■■□□□ 1.3
VPS29-206ENST00000549578 PCIF1Q9H4Z3 704 aa23.16■■□□□ 1.3
VPS29-206ENST00000549578 MEIS3P2A8K0S8 358 aa23.15■■□□□ 1.3
VPS29-206ENST00000549578 PDXKO00764 312 aa23.15■■□□□ 1.3
VPS29-206ENST00000549578 PSMA7O14818 248 aa23.15■■□□□ 1.3
VPS29-206ENST00000549578 OSTNP61366 133 aa23.15■■□□□ 1.3
VPS29-206ENST00000549578 ZSCAN23Q3MJ62 389 aa23.15■■□□□ 1.3
VPS29-206ENST00000549578 RASIP1Q5U651 963 aa23.15■■□□□ 1.3
VPS29-206ENST00000549578 APBB1IPQ7Z5R6 666 aaPredicted RBP23.15■■□□□ 1.3
VPS29-206ENST00000549578 MLKLQ8NB16 471 aa23.15■■□□□ 1.3
VPS29-206ENST00000549578 RNPC3Q96LT9 517 aaKnown RBP23.15■■□□□ 1.3
VPS29-206ENST00000549578 MTIF3Q9H2K0 278 aaKnown RBP23.15■■□□□ 1.3
VPS29-206ENST00000549578 RNF39Q9H2S5 420 aa23.15■■□□□ 1.3
VPS29-206ENST00000549578 CTNND2Q9UQB3 1225 aa23.15■■□□□ 1.3
VPS29-206ENST00000549578 PTPRSQ13332 1948 aa23.15■■□□□ 1.3
VPS29-206ENST00000549578 TRIM49BA6NDI0 452 aa23.14■■□□□ 1.3
VPS29-206ENST00000549578 ZNF623O75123 536 aa23.14■■□□□ 1.3
VPS29-206ENST00000549578 UPP2O95045 317 aa23.14■■□□□ 1.3
VPS29-206ENST00000549578 SKIP12755 728 aa23.14■■□□□ 1.3
VPS29-206ENST00000549578 GARTP22102 1010 aa23.14■■□□□ 1.3
VPS29-206ENST00000549578 PPP1R2P41236 205 aa23.14■■□□□ 1.3
VPS29-206ENST00000549578 PMS1P54277 932 aaKnown RBP23.14■■□□□ 1.3
VPS29-206ENST00000549578 ZCWPW2Q504Y3 356 aa23.14■■□□□ 1.3
VPS29-206ENST00000549578 ZBTB41Q5SVQ8 909 aa23.14■■□□□ 1.3
VPS29-206ENST00000549578 CENPPQ6IPU0 288 aa23.14■■□□□ 1.3
VPS29-206ENST00000549578 CHRDL2Q6WN34 429 aa23.14■■□□□ 1.3
VPS29-206ENST00000549578 ZNF598Q86UK7 904 aaKnown RBP23.14■■□□□ 1.3
VPS29-206ENST00000549578 TMEM192Q8IY95 271 aa23.14■■□□□ 1.3
VPS29-206ENST00000549578 ZSWIM2Q8NEG5 633 aa23.14■■□□□ 1.3
VPS29-206ENST00000549578 NELFBQ8WX92 580 aa23.14■■□□□ 1.3
VPS29-206ENST00000549578 SAAL1Q96ER3 474 aa23.14■■□□□ 1.3
VPS29-206ENST00000549578 DHTKD1Q96HY7 919 aaPredicted RBP23.14■■□□□ 1.3
VPS29-206ENST00000549578 TMEM161AQ9NX61 479 aa23.14■■□□□ 1.3
VPS29-206ENST00000549578 SNTG2Q9NY99 539 aa23.14■■□□□ 1.3
VPS29-206ENST00000549578 AGO2Q9UKV8 859 aaKnown RBP23.14■■□□□ 1.3
VPS29-206ENST00000549578 SLC4A7Q9Y6M7 1214 aa23.14■■□□□ 1.3
VPS29-206ENST00000549578 FAM189A1O60320 539 aa23.13■■□□□ 1.29
VPS29-206ENST00000549578 LETM1O95202 739 aaPredicted RBP23.13■■□□□ 1.29
VPS29-206ENST00000549578 AKAP5P24588 427 aa23.13■■□□□ 1.29
VPS29-206ENST00000549578 CYP2J2P51589 502 aa23.13■■□□□ 1.29
VPS29-206ENST00000549578 SNRPFP62306 86 aaKnown RBP23.13■■□□□ 1.29
VPS29-206ENST00000549578 TYRO3Q06418 890 aa23.13■■□□□ 1.29
VPS29-206ENST00000549578 FAM117BQ6P1L5 589 aa23.13■■□□□ 1.29
VPS29-206ENST00000549578 MRPL10Q7Z7H8 261 aaKnown RBP23.13■■□□□ 1.29
VPS29-206ENST00000549578 CRIPAKQ8N1N5 446 aa23.13■■□□□ 1.29
VPS29-206ENST00000549578 GOLGA5Q8TBA6 731 aa23.13■■□□□ 1.29
VPS29-206ENST00000549578 P2RX5Q93086 422 aa23.13■■□□□ 1.29
VPS29-206ENST00000549578 LRFN2Q9ULH4 789 aa23.13■■□□□ 1.29
VPS29-206ENST00000549578 TRAF3IP3Q9Y228 551 aa23.13■■□□□ 1.29
VPS29-206ENST00000549578 PCDHB7Q9Y5E2 793 aa23.13■■□□□ 1.29
VPS29-206ENST00000549578 LAMA2P24043 3122 aaKnown RBP23.13■■□□□ 1.29
VPS29-206ENST00000549578 OGTO15294 1046 aa23.13■■□□□ 1.29
VPS29-206ENST00000549578 CALUO43852 315 aaPredicted RBP23.13■■□□□ 1.29
VPS29-206ENST00000549578 ITGA4P13612 1032 aa23.13■■□□□ 1.29
VPS29-206ENST00000549578 CCNE1P24864 410 aa23.13■■□□□ 1.29
VPS29-206ENST00000549578 BMP8BP34820 402 aa23.13■■□□□ 1.29
VPS29-206ENST00000549578 GRM5P41594 1212 aa23.13■■□□□ 1.29
VPS29-206ENST00000549578 STX17P56962 302 aa23.13■■□□□ 1.29
VPS29-206ENST00000549578 STX1AQ16623 288 aa23.13■■□□□ 1.29
VPS29-206ENST00000549578 ANKRD40Q6AI12 368 aa23.13■■□□□ 1.29
VPS29-206ENST00000549578 NPAS4Q8IUM7 802 aa23.13■■□□□ 1.29
VPS29-206ENST00000549578 NOC3LQ8WTT2 800 aaKnown RBP23.13■■□□□ 1.29
VPS29-206ENST00000549578 TOP1MTQ969P6 601 aa23.13■■□□□ 1.29
VPS29-206ENST00000549578 GZF1Q9H116 711 aaPredicted RBP23.13■■□□□ 1.29
VPS29-206ENST00000549578 ELAC1Q9H777 363 aaKnown RBP23.13■■□□□ 1.29
VPS29-206ENST00000549578 HSPBP1Q9NZL4 362 aa23.13■■□□□ 1.29
VPS29-206ENST00000549578 CGNQ9P2M7 1197 aaKnown RBP23.13■■□□□ 1.29
VPS29-206ENST00000549578 GOLGA8IPA6NC78 632 aa23.12■■□□□ 1.29
VPS29-206ENST00000549578 GOLGA8JA6NMD2 632 aa23.12■■□□□ 1.29
VPS29-206ENST00000549578 EOMESO95936 686 aa23.12■■□□□ 1.29
VPS29-206ENST00000549578 NR3C1P04150 777 aa23.12■■□□□ 1.29
VPS29-206ENST00000549578 STAG3L1P0CL83 205 aa23.12■■□□□ 1.29
VPS29-206ENST00000549578 FGFR1P11362 822 aa23.12■■□□□ 1.29
VPS29-206ENST00000549578 TNFSF9P41273 254 aa23.12■■□□□ 1.29
VPS29-206ENST00000549578 ACOT2P49753 483 aa23.12■■□□□ 1.29
VPS29-206ENST00000549578 PAK1Q13153 545 aa23.12■■□□□ 1.29
VPS29-206ENST00000549578 AGMOQ6ZNB7 445 aa23.12■■□□□ 1.29
VPS29-206ENST00000549578 C12orf56Q8IXR9 622 aa23.12■■□□□ 1.29
VPS29-206ENST00000549578 PGBD4Q96DM1 585 aa23.12■■□□□ 1.29
VPS29-206ENST00000549578 FAM213AQ9BRX8 229 aa23.12■■□□□ 1.29
VPS29-206ENST00000549578 ANO10Q9NW15 660 aa23.12■■□□□ 1.29
VPS29-206ENST00000549578 PARP2Q9UGN5 583 aa23.12■■□□□ 1.29
VPS29-206ENST00000549578 RECQL4O94761 1208 aa23.11■■□□□ 1.29
VPS29-206ENST00000549578 ATP2A2P16615 1042 aaKnown RBP23.11■■□□□ 1.29
VPS29-206ENST00000549578 HACE1Q8IYU2 909 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms