RNA–Protein interactions for RNA: ENST00000549139.5

CHMP1A-206, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 812 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-206ENST00000549139 PLCD3Q8N3E9 789 aa17.41■□□□□ 0.38
CHMP1A-206ENST00000549139 MCPH1Q8NEM0 835 aa17.41■□□□□ 0.38
CHMP1A-206ENST00000549139 ZNF396Q96N95 335 aaPredicted RBP17.41■□□□□ 0.38
CHMP1A-206ENST00000549139 USP28Q96RU2 1077 aa17.41■□□□□ 0.38
CHMP1A-206ENST00000549139 NT5C3AQ9H0P0 336 aa17.41■□□□□ 0.38
CHMP1A-206ENST00000549139 MFSD1Q9H3U5 465 aa17.41■□□□□ 0.38
CHMP1A-206ENST00000549139 IFT122Q9HBG6 1241 aa17.41■□□□□ 0.38
CHMP1A-206ENST00000549139 IRAK3Q9Y616 596 aa17.41■□□□□ 0.38
CHMP1A-206ENST00000549139 ARHGEF35A5YM69 484 aa17.4■□□□□ 0.38
CHMP1A-206ENST00000549139 E9PMD0 336 aa17.4■□□□□ 0.38
CHMP1A-206ENST00000549139 USO1O60763 962 aaKnown RBP17.4■□□□□ 0.38
CHMP1A-206ENST00000549139 CYP11B2P19099 503 aa17.4■□□□□ 0.38
CHMP1A-206ENST00000549139 SLC39A14Q15043 492 aa17.4■□□□□ 0.38
CHMP1A-206ENST00000549139 ATAT1Q5SQI0 421 aa17.4■□□□□ 0.38
CHMP1A-206ENST00000549139 PADI6Q6TGC4 694 aa17.4■□□□□ 0.38
CHMP1A-206ENST00000549139 SRGAP1Q7Z6B7 1085 aa17.4■□□□□ 0.38
CHMP1A-206ENST00000549139 CABP7Q86V35 215 aa17.4■□□□□ 0.38
CHMP1A-206ENST00000549139 ABI1Q8IZP0 508 aa17.4■□□□□ 0.38
CHMP1A-206ENST00000549139 FLCNQ8NFG4 579 aa17.4■□□□□ 0.38
CHMP1A-206ENST00000549139 SLC22A17Q8WUG5 538 aa17.4■□□□□ 0.38
CHMP1A-206ENST00000549139 NLRP4Q96MN2 994 aa17.4■□□□□ 0.38
CHMP1A-206ENST00000549139 ZBP1Q9H171 429 aa17.4■□□□□ 0.38
CHMP1A-206ENST00000549139 BHMT2Q9H2M3 363 aa17.4■□□□□ 0.38
CHMP1A-206ENST00000549139 DZANK1Q9NVP4 752 aa17.4■□□□□ 0.38
CHMP1A-206ENST00000549139 SRPRBQ9Y5M8 271 aaKnown RBP17.4■□□□□ 0.38
CHMP1A-206ENST00000549139 A0A0U1RQF3 1178 aa17.39■□□□□ 0.37
CHMP1A-206ENST00000549139 NT5C1B-RDH14C9J2C7 533 aa17.39■□□□□ 0.37
CHMP1A-206ENST00000549139 CXCL14O95715 111 aa17.39■□□□□ 0.37
CHMP1A-206ENST00000549139 SRGAP2CP0DJJ0 459 aa17.39■□□□□ 0.37
CHMP1A-206ENST00000549139 EPCAMP16422 314 aa17.39■□□□□ 0.37
CHMP1A-206ENST00000549139 MARCKSP29966 332 aaPredicted RBP17.39■□□□□ 0.37
CHMP1A-206ENST00000549139 UBA7P41226 1012 aa17.39■□□□□ 0.37
CHMP1A-206ENST00000549139 NASPP49321 788 aaPredicted RBP17.39■□□□□ 0.37
CHMP1A-206ENST00000549139 CEBPZQ03701 1054 aaKnown RBP17.39■□□□□ 0.37
CHMP1A-206ENST00000549139 GRIN1Q05586 938 aa17.39■□□□□ 0.37
CHMP1A-206ENST00000549139 TFDP1Q14186 410 aa17.39■□□□□ 0.37
CHMP1A-206ENST00000549139 PNMA5Q96PV4 448 aa17.39■□□□□ 0.37
CHMP1A-206ENST00000549139 CCSER1Q9C0I3 900 aa17.39■□□□□ 0.37
CHMP1A-206ENST00000549139 FBXO2Q9UK22 296 aaPredicted RBP17.39■□□□□ 0.37
CHMP1A-206ENST00000549139 CACNA1IQ9P0X4 2223 aa17.38■□□□□ 0.37
CHMP1A-206ENST00000549139 CSDE1O75534 798 aaKnown RBP17.38■□□□□ 0.37
CHMP1A-206ENST00000549139 ZSCAN20P17040 1043 aaPredicted RBP17.38■□□□□ 0.37
CHMP1A-206ENST00000549139 SFPQP23246 707 aaKnown RBP eCLIP17.38■□□□□ 0.37
CHMP1A-206ENST00000549139 BCAR1P56945 870 aa17.38■□□□□ 0.37
CHMP1A-206ENST00000549139 PKP1Q13835 747 aa17.38■□□□□ 0.37
CHMP1A-206ENST00000549139 ANGPT1Q15389 498 aa17.38■□□□□ 0.37
CHMP1A-206ENST00000549139 FOXD4L5Q5VV16 416 aaPredicted RBP17.38■□□□□ 0.37
CHMP1A-206ENST00000549139 ATL3Q6DD88 541 aa17.38■□□□□ 0.37
CHMP1A-206ENST00000549139 TMEM173Q86WV6 379 aaPredicted RBP17.38■□□□□ 0.37
CHMP1A-206ENST00000549139 IFNLR1Q8IU57 520 aaPredicted RBP17.38■□□□□ 0.37
CHMP1A-206ENST00000549139 VPS52Q8N1B4 723 aa17.38■□□□□ 0.37
CHMP1A-206ENST00000549139 RNF149Q8NC42 400 aa17.38■□□□□ 0.37
CHMP1A-206ENST00000549139 LINC00301Q8NCQ3 95 aa17.38■□□□□ 0.37
CHMP1A-206ENST00000549139 HELQQ8TDG4 1101 aa17.38■□□□□ 0.37
CHMP1A-206ENST00000549139 FOXD4L4Q8WXT5 416 aaPredicted RBP17.38■□□□□ 0.37
CHMP1A-206ENST00000549139 AUTS2Q8WXX7 1259 aa17.38■□□□□ 0.37
CHMP1A-206ENST00000549139 CALML4Q96GE6 196 aa17.38■□□□□ 0.37
CHMP1A-206ENST00000549139 CDK5RAP3Q96JB5 506 aa17.38■□□□□ 0.37
CHMP1A-206ENST00000549139 CHST12Q9NRB3 414 aa17.38■□□□□ 0.37
CHMP1A-206ENST00000549139 C2orf16Q68DN1 1984 aa17.37■□□□□ 0.37
CHMP1A-206ENST00000549139 FGFR4P22455 802 aa17.37■□□□□ 0.37
CHMP1A-206ENST00000549139 GLRA2P23416 452 aa17.37■□□□□ 0.37
CHMP1A-206ENST00000549139 PTENP60484 403 aa17.37■□□□□ 0.37
CHMP1A-206ENST00000549139 PCBP1Q15365 356 aaKnown RBP eCLIP17.37■□□□□ 0.37
CHMP1A-206ENST00000549139 ZRSR1Q15695 479 aaKnown RBP17.37■□□□□ 0.37
CHMP1A-206ENST00000549139 TMEM119Q4V9L6 283 aa17.37■□□□□ 0.37
CHMP1A-206ENST00000549139 MAEAQ7L5Y9 396 aa17.37■□□□□ 0.37
CHMP1A-206ENST00000549139 KCNK18Q7Z418 384 aa17.37■□□□□ 0.37
CHMP1A-206ENST00000549139 DTWD2Q8NBA8 298 aa17.37■□□□□ 0.37
CHMP1A-206ENST00000549139 ASAP3Q8TDY4 903 aa17.37■□□□□ 0.37
CHMP1A-206ENST00000549139 NFKBIZQ9BYH8 718 aa17.37■□□□□ 0.37
CHMP1A-206ENST00000549139 CSRNP2Q9H175 543 aa17.37■□□□□ 0.37
CHMP1A-206ENST00000549139 POLR3FQ9H1D9 316 aaPredicted RBP17.37■□□□□ 0.37
CHMP1A-206ENST00000549139 TFIP11Q9UBB9 837 aaKnown RBP17.37■□□□□ 0.37
CHMP1A-206ENST00000549139 DUSP12Q9UNI6 340 aa17.37■□□□□ 0.37
CHMP1A-206ENST00000549139 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.36■□□□□ 0.37
CHMP1A-206ENST00000549139 PPP6R2O75170 966 aa17.36■□□□□ 0.37
CHMP1A-206ENST00000549139 YEATS4O95619 227 aa17.36■□□□□ 0.37
CHMP1A-206ENST00000549139 CTSAP10619 480 aa17.36■□□□□ 0.37
CHMP1A-206ENST00000549139 PHKA2P46019 1235 aa17.36■□□□□ 0.37
CHMP1A-206ENST00000549139 ALDH7A1P49419 539 aaKnown RBP17.36■□□□□ 0.37
CHMP1A-206ENST00000549139 TDGQ13569 410 aa17.36■□□□□ 0.37
CHMP1A-206ENST00000549139 CAPSQ13938 189 aa17.36■□□□□ 0.37
CHMP1A-206ENST00000549139 STK38Q15208 465 aa17.36■□□□□ 0.37
CHMP1A-206ENST00000549139 RINT1Q6NUQ1 792 aa17.36■□□□□ 0.37
CHMP1A-206ENST00000549139 TMC5Q6UXY8 1006 aa17.36■□□□□ 0.37
CHMP1A-206ENST00000549139 CATSPER4Q7RTX7 472 aa17.36■□□□□ 0.37
CHMP1A-206ENST00000549139 GPR149Q86SP6 731 aa17.36■□□□□ 0.37
CHMP1A-206ENST00000549139 SYT2Q8N9I0 419 aaPredicted RBP17.36■□□□□ 0.37
CHMP1A-206ENST00000549139 KRI1Q8N9T8 703 aaKnown RBP17.36■□□□□ 0.37
CHMP1A-206ENST00000549139 RNF169Q8NCN4 708 aa17.36■□□□□ 0.37
CHMP1A-206ENST00000549139 RMDN1Q96DB5 314 aa17.36■□□□□ 0.37
CHMP1A-206ENST00000549139 TMEM169Q96HH4 297 aa17.36■□□□□ 0.37
CHMP1A-206ENST00000549139 RTP3Q9BQQ7 232 aa17.36■□□□□ 0.37
CHMP1A-206ENST00000549139 MRPL9Q9BYD2 267 aaKnown RBP17.36■□□□□ 0.37
CHMP1A-206ENST00000549139 MINDY3Q9H8M7 445 aa17.36■□□□□ 0.37
CHMP1A-206ENST00000549139 KCNK12Q9HB15 430 aa17.36■□□□□ 0.37
CHMP1A-206ENST00000549139 GPRC5CQ9NQ84 441 aa17.36■□□□□ 0.37
CHMP1A-206ENST00000549139 DACT1Q9NYF0 836 aa17.36■□□□□ 0.37
CHMP1A-206ENST00000549139 KMT2BQ9UMN6 2715 aaPredicted RBP17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms