RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 GLYCTKQ8IVS8 523 aa14.27□□□□□ -0.13
SCAF11-208ENST00000546534 SMG8Q8ND04 991 aaKnown RBP14.27□□□□□ -0.13
SCAF11-208ENST00000546534 BICD2Q8TD16 824 aa14.27□□□□□ -0.13
SCAF11-208ENST00000546534 PHKBQ93100 1093 aa14.27□□□□□ -0.13
SCAF11-208ENST00000546534 CHST7Q9NS84 486 aa14.27□□□□□ -0.13
SCAF11-208ENST00000546534 SPATA6Q9NWH7 488 aaPredicted RBP14.27□□□□□ -0.13
SCAF11-208ENST00000546534 MTF2Q9Y483 593 aaPredicted RBP14.27□□□□□ -0.13
SCAF11-208ENST00000546534 COL4A3BPQ9Y5P4 624 aa14.27□□□□□ -0.13
SCAF11-208ENST00000546534 CACNA1IQ9P0X4 2223 aa14.27□□□□□ -0.13
SCAF11-208ENST00000546534 CCDC196A0A1B0GTZ2 297 aa14.26□□□□□ -0.13
SCAF11-208ENST00000546534 KANSL1LA0AUZ9 987 aa14.26□□□□□ -0.13
SCAF11-208ENST00000546534 SPTLC1O15269 473 aa14.26□□□□□ -0.13
SCAF11-208ENST00000546534 LAMTOR5O43504 91 aa14.26□□□□□ -0.13
SCAF11-208ENST00000546534 C1RP00736 705 aa14.26□□□□□ -0.13
SCAF11-208ENST00000546534 SRGAP2CP0DJJ0 459 aa14.26□□□□□ -0.13
SCAF11-208ENST00000546534 ITGA4P13612 1032 aa14.26□□□□□ -0.13
SCAF11-208ENST00000546534 FSHRP23945 695 aa14.26□□□□□ -0.13
SCAF11-208ENST00000546534 NPEPPSP55786 919 aa14.26□□□□□ -0.13
SCAF11-208ENST00000546534 CSTF1Q05048 431 aaKnown RBP14.26□□□□□ -0.13
SCAF11-208ENST00000546534 SNW1Q13573 536 aaKnown RBP14.26□□□□□ -0.13
SCAF11-208ENST00000546534 PLA2G4FQ68DD2 849 aa14.26□□□□□ -0.13
SCAF11-208ENST00000546534 SRGAP1Q7Z6B7 1085 aa14.26□□□□□ -0.13
SCAF11-208ENST00000546534 FGF14Q92915 247 aa14.26□□□□□ -0.13
SCAF11-208ENST00000546534 GAD1Q99259 594 aa14.26□□□□□ -0.13
SCAF11-208ENST00000546534 JPH2Q9BR39 696 aaPredicted RBP14.26□□□□□ -0.13
SCAF11-208ENST00000546534 DDX23Q9BUQ8 820 aaKnown RBP14.26□□□□□ -0.13
SCAF11-208ENST00000546534 GPR62Q9BZJ7 368 aa14.26□□□□□ -0.13
SCAF11-208ENST00000546534 UBN1Q9NPG3 1134 aa14.26□□□□□ -0.13
SCAF11-208ENST00000546534 MIOSQ9NXC5 875 aa14.26□□□□□ -0.13
SCAF11-208ENST00000546534 FBXO4Q9UKT5 387 aa14.26□□□□□ -0.13
SCAF11-208ENST00000546534 ACACBO00763 2458 aa14.25□□□□□ -0.13
SCAF11-208ENST00000546534 ARL5CA6NH57 179 aa14.25□□□□□ -0.13
SCAF11-208ENST00000546534 ZMYND10O75800 440 aa14.25□□□□□ -0.13
SCAF11-208ENST00000546534 RPL17P18621 184 aaKnown RBP14.25□□□□□ -0.13
SCAF11-208ENST00000546534 SDHBP21912 280 aa14.25□□□□□ -0.13
SCAF11-208ENST00000546534 MLH1P40692 756 aa14.25□□□□□ -0.13
SCAF11-208ENST00000546534 SCNN1GP51170 649 aa14.25□□□□□ -0.13
SCAF11-208ENST00000546534 PSMC5P62195 406 aa14.25□□□□□ -0.13
SCAF11-208ENST00000546534 CAMK2BQ13554 666 aa14.25□□□□□ -0.13
SCAF11-208ENST00000546534 Q4G0T1 1027 aa14.25□□□□□ -0.13
SCAF11-208ENST00000546534 GPR161Q8N6U8 529 aaKnown RBP14.25□□□□□ -0.13
SCAF11-208ENST00000546534 CNNM3Q8NE01 707 aa14.25□□□□□ -0.13
SCAF11-208ENST00000546534 TBCKQ8TEA7 893 aa14.25□□□□□ -0.13
SCAF11-208ENST00000546534 PRPF31Q8WWY3 499 aaKnown RBP14.25□□□□□ -0.13
SCAF11-208ENST00000546534 ATRIPQ8WXE1 791 aa14.25□□□□□ -0.13
SCAF11-208ENST00000546534 TMEM143Q96AN5 459 aa14.25□□□□□ -0.13
SCAF11-208ENST00000546534 BORCS6Q96GS4 357 aa14.25□□□□□ -0.13
SCAF11-208ENST00000546534 ZFP42Q96MM3 310 aa14.25□□□□□ -0.13
SCAF11-208ENST00000546534 EIF2AQ9BY44 585 aaKnown RBP14.25□□□□□ -0.13
SCAF11-208ENST00000546534 BCO2Q9BYV7 579 aa14.25□□□□□ -0.13
SCAF11-208ENST00000546534 VPS54Q9P1Q0 977 aa14.25□□□□□ -0.13
SCAF11-208ENST00000546534 FNIP2Q9P278 1114 aa14.25□□□□□ -0.13
SCAF11-208ENST00000546534 HES2Q9Y543 173 aa14.25□□□□□ -0.13
SCAF11-208ENST00000546534 IPPQ9Y573 584 aa14.25□□□□□ -0.13
SCAF11-208ENST00000546534 ZFP37Q9Y6Q3 630 aaPredicted RBP14.25□□□□□ -0.13
SCAF11-208ENST00000546534 COL4A3Q01955 1670 aa14.25□□□□□ -0.13
SCAF11-208ENST00000546534 SPTBN2O15020 2390 aa14.25□□□□□ -0.13
SCAF11-208ENST00000546534 FAM170BA6NMN3 283 aa14.24□□□□□ -0.13
SCAF11-208ENST00000546534 TDP2O95551 362 aa14.24□□□□□ -0.13
SCAF11-208ENST00000546534 CD72P21854 359 aa14.24□□□□□ -0.13
SCAF11-208ENST00000546534 NTHL1P78549 312 aa14.24□□□□□ -0.13
SCAF11-208ENST00000546534 LAMTOR4Q0VGL1 99 aa14.24□□□□□ -0.13
SCAF11-208ENST00000546534 UBXN2BQ14CS0 331 aa14.24□□□□□ -0.13
SCAF11-208ENST00000546534 MLF2Q15773 248 aaPredicted RBP14.24□□□□□ -0.13
SCAF11-208ENST00000546534 USP41Q3LFD5 358 aa14.24□□□□□ -0.13
SCAF11-208ENST00000546534 TSGA10IPQ3SY00 556 aa14.24□□□□□ -0.13
SCAF11-208ENST00000546534 SLC44A4Q53GD3 710 aa14.24□□□□□ -0.13
SCAF11-208ENST00000546534 FUT10Q6P4F1 479 aa14.24□□□□□ -0.13
SCAF11-208ENST00000546534 GRASPQ7Z6J2 395 aaPredicted RBP14.24□□□□□ -0.13
SCAF11-208ENST00000546534 PLPP6Q8IY26 295 aa14.24□□□□□ -0.13
SCAF11-208ENST00000546534 ZBTB44Q8NCP5 570 aa14.24□□□□□ -0.13
SCAF11-208ENST00000546534 CCDC148Q8NFR7 591 aa14.24□□□□□ -0.13
SCAF11-208ENST00000546534 PSPC1Q8WXF1 523 aaKnown RBP14.24□□□□□ -0.13
SCAF11-208ENST00000546534 SLC7A3Q8WY07 619 aa14.24□□□□□ -0.13
SCAF11-208ENST00000546534 COLEC11Q9BWP8 271 aa14.24□□□□□ -0.13
SCAF11-208ENST00000546534 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.24□□□□□ -0.13
SCAF11-208ENST00000546534 CDH7Q9ULB5 785 aa14.24□□□□□ -0.13
SCAF11-208ENST00000546534 SMG5Q9UPR3 1016 aaKnown RBP14.24□□□□□ -0.13
SCAF11-208ENST00000546534 PCDHGA2Q9Y5H1 932 aa14.24□□□□□ -0.13
SCAF11-208ENST00000546534 FRYLO94915 3013 aa14.23□□□□□ -0.13
SCAF11-208ENST00000546534 CYP3A7-CYP3A51PA0A087WV96 503 aa14.23□□□□□ -0.13
SCAF11-208ENST00000546534 DCDC2BA2VCK2 349 aa14.23□□□□□ -0.13
SCAF11-208ENST00000546534 EML1O00423 815 aa14.23□□□□□ -0.13
SCAF11-208ENST00000546534 NR1I2O75469 434 aa14.23□□□□□ -0.13
SCAF11-208ENST00000546534 CPA1P15085 419 aa14.23□□□□□ -0.13
SCAF11-208ENST00000546534 CYP3A7P24462 503 aa14.23□□□□□ -0.13
SCAF11-208ENST00000546534 FGD1P98174 961 aa14.23□□□□□ -0.13
SCAF11-208ENST00000546534 AKAP17AQ02040 695 aaKnown RBP14.23□□□□□ -0.13
SCAF11-208ENST00000546534 PRKCQQ04759 706 aa14.23□□□□□ -0.13
SCAF11-208ENST00000546534 GPR65Q8IYL9 337 aa14.23□□□□□ -0.13
SCAF11-208ENST00000546534 ETNPPLQ8TBG4 499 aa14.23□□□□□ -0.13
SCAF11-208ENST00000546534 KCNV2Q8TDN2 545 aa14.23□□□□□ -0.13
SCAF11-208ENST00000546534 RABGGTAQ92696 567 aa14.23□□□□□ -0.13
SCAF11-208ENST00000546534 MBOAT7Q96N66 472 aa14.23□□□□□ -0.13
SCAF11-208ENST00000546534 OSBPL6Q9BZF3 934 aa14.23□□□□□ -0.13
SCAF11-208ENST00000546534 DHX33Q9H6R0 707 aaKnown RBP14.23□□□□□ -0.13
SCAF11-208ENST00000546534 CDV3Q9UKY7 258 aaKnown RBP14.23□□□□□ -0.13
SCAF11-208ENST00000546534 PRR5-ARHGAP8B1AHC4 643 aa14.22□□□□□ -0.13
SCAF11-208ENST00000546534 TSPAN1O60635 241 aa14.22□□□□□ -0.13
SCAF11-208ENST00000546534 LILRB5O75023 590 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms