RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 UBXN2AP68543 259 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 ROR2Q01974 943 aaKnown RBP8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 UBXN1Q04323 297 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 PPP2R5CQ13362 524 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 ARHGEF6Q15052 776 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 PPP1R7Q15435 360 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 HAUS3Q68CZ6 603 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 HIBCHQ6NVY1 386 aaPredicted RBP8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 SLC30A10Q6XR72 485 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 OTOP1Q7RTM1 612 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 PNMA8AQ86V59 439 aaPredicted RBP8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 GUF1Q8N442 669 aaKnown RBP8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 MAB21L3Q8N8X9 362 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 OSBPL9Q96SU4 736 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 SPON1Q9HCB6 807 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 BATF3Q9NR55 127 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 EHD2Q9NZN4 543 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 PITPNM2Q9BZ72 1349 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 NPHP3-ACAD11A0A0J9YXS1 232 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 GRXCR2A6NFK2 248 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 KRT86O43790 486 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 FAM107AO95990 144 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 HOXA7P31268 230 aaPredicted RBP8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 MDH1P40925 334 aaKnown RBP8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 PAPOLAP51003 745 aaKnown RBP8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 DNA2P51530 1060 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 KIF11P52732 1056 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 EPHB4P54760 987 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 SPP2Q13103 211 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 ZCWPW2Q504Y3 356 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 CEP55Q53EZ4 464 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 PAPD7Q5XG87 772 aaKnown RBP8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 CAPRIN2Q6IMN6 1127 aaKnown RBP8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 CCSAPQ6IQ19 270 aaPredicted RBP8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 FOXR2Q6PJQ5 311 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 ZNF280CQ8ND82 737 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 IL31RAQ8NI17 732 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 TRIM47Q96LD4 638 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 HSD17B14Q9BPX1 270 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 OSBPL7Q9BZF2 842 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 TANGO6Q9C0B7 1094 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 ACTR5Q9H9F9 607 aaPredicted RBP8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 RAVER2Q9HCJ3 691 aaKnown RBP8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 CREBZFQ9NS37 354 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 ADAMTS5Q9UNA0 930 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 SSX2IPQ9Y2D8 614 aa8.59□□□□□ -1.03
PDLIM5-221ENST00000542407 NDUFB5O43674 189 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 FLOT1O75955 427 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 CLTAP09496 248 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 ARP10275 920 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 CYP27A1Q02318 531 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 ODF2Q5BJF6 829 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 KDM7AQ6ZMT4 941 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 LRRC49Q8IUZ0 686 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 EHBP1Q8NDI1 1231 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.58□□□□□ -1.041e-6■■■□□ 17.2
PDLIM5-221ENST00000542407 MS4A4AQ96JQ5 239 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 MPHOSPH6Q99547 160 aaKnown RBP8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 GORASP1Q9BQQ3 440 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 LACRTQ9GZZ8 138 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 CROTQ9UKG9 612 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 L3MBTL1Q9Y468 752 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 A0A0G2JMZ2 1700 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 PABPN1LA6NDY0 278 aaKnown RBP8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 ZNF233A6NK53 670 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 LGALS16A8MUM7 142 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 VWA5AO00534 786 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 B3GALNT1O75752 331 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 MYBL1P10243 752 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 EPB41P11171 864 aaKnown RBP8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 ITGB5P18084 799 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 SCTRP47872 440 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 ZNF131P52739 623 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 HERVK_113P62684 666 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 ITIH3Q06033 890 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 ANKRD20A8PQ5CZ79 823 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 MIIPQ5JXC2 388 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 LRRC55Q6ZSA7 311 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 GPBP1Q86WP2 473 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 CSGALNACT2Q8N6G5 542 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 SYT2Q8N9I0 419 aaPredicted RBP8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 PBXIP1Q96AQ6 731 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 EIF2AK1Q9BQI3 630 aaKnown RBP8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 C2orf49Q9BVC5 232 aaPredicted RBP8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 NOD2Q9HC29 1040 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 MAFFQ9ULX9 164 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 NFU1Q9UMS0 254 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 DDNO94850 711 aaPredicted RBP8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 UPP2O95045 317 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 BCRP11274 1271 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 YBX3P16989 372 aaKnown RBP eCLIP8.58□□□□□ -1.046e-7■■□□□ 12.3
PDLIM5-221ENST00000542407 ZNF76P36508 570 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 NEK2P51955 445 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 VAV2P52735 878 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 GIT2Q14161 759 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 EMC10Q5UCC4 262 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 SYTL5Q8TDW5 730 aaPredicted RBP8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 ATG4CQ96DT6 458 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 SPAG5Q96R06 1193 aa8.58□□□□□ -1.04
PDLIM5-221ENST00000542407 MXRA8Q9BRK3 442 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms