RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, human

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP28-210	ENST00000542033	CHMP4C	Q96CF2	233 aa		4.25	□□□□□ -1.73
USP28-210	ENST00000542033	CDC5L	Q99459	802 aa	Known RBP	4.25	□□□□□ -1.73
USP28-210	ENST00000542033	AGO3	Q9H9G7	860 aa	Known RBP	4.25	□□□□□ -1.73
USP28-210	ENST00000542033	AASDHPPT	Q9NRN7	309 aa		4.25	□□□□□ -1.73
USP28-210	ENST00000542033	AURKAIP1	Q9NWT8	199 aa	Predicted RBP	4.25	□□□□□ -1.73
USP28-210	ENST00000542033	CAPN14	A8MX76	684 aa		4.24	□□□□□ -1.73
USP28-210	ENST00000542033	FZD9	O00144	591 aa		4.24	□□□□□ -1.73
USP28-210	ENST00000542033	PCDHGA12	O60330	932 aa		4.24	□□□□□ -1.73
USP28-210	ENST00000542033	NDUFS2	O75306	463 aa		4.24	□□□□□ -1.73
USP28-210	ENST00000542033	ITGA10	O75578	1167 aa		4.24	□□□□□ -1.73
USP28-210	ENST00000542033	PARN	O95453	639 aa	Known RBP	4.24	□□□□□ -1.73
USP28-210	ENST00000542033	GAST	P01350	101 aa		4.24	□□□□□ -1.73
USP28-210	ENST00000542033	HIBADH	P31937	336 aa	Known RBP	4.24	□□□□□ -1.73
USP28-210	ENST00000542033	MCAM	P43121	646 aa		4.24	□□□□□ -1.73
USP28-210	ENST00000542033	RECQL	P46063	649 aa	Predicted RBP	4.24	□□□□□ -1.73
USP28-210	ENST00000542033	R3HDM1	Q15032	1099 aa	Known RBP	4.24	□□□□□ -1.73
USP28-210	ENST00000542033	SPDYA	Q5MJ70	313 aa		4.24	□□□□□ -1.73
USP28-210	ENST00000542033	FKBP15	Q5T1M5	1219 aa		4.24	□□□□□ -1.73
USP28-210	ENST00000542033	PDZD4	Q76G19	769 aa	Predicted RBP	4.24	□□□□□ -1.73
USP28-210	ENST00000542033	THEMIS	Q8N1K5	641 aa	Predicted RBP	4.24	□□□□□ -1.73
USP28-210	ENST00000542033	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	4.24	□□□□□ -1.73
USP28-210	ENST00000542033	TEKT5	Q96M29	485 aa		4.24	□□□□□ -1.73
USP28-210	ENST00000542033	UHRF1	Q96T88	793 aa	Predicted RBP	4.24	□□□□□ -1.73
USP28-210	ENST00000542033	DMRT3	Q9NQL9	472 aa		4.24	□□□□□ -1.73
USP28-210	ENST00000542033	GPRC5D	Q9NZD1	345 aa		4.24	□□□□□ -1.73
USP28-210	ENST00000542033	GIT1	Q9Y2X7	761 aa		4.24	□□□□□ -1.73
USP28-210	ENST00000542033	PCDHGA9	Q9Y5G4	932 aa	Known RBP	4.24	□□□□□ -1.73
USP28-210	ENST00000542033	PCDHGA8	Q9Y5G5	932 aa		4.24	□□□□□ -1.73
USP28-210	ENST00000542033	PCDHGA7	Q9Y5G6	932 aa		4.24	□□□□□ -1.73
USP28-210	ENST00000542033	PCDHGA6	Q9Y5G7	932 aa		4.24	□□□□□ -1.73
USP28-210	ENST00000542033	PCDHGA3	Q9Y5H0	932 aa		4.24	□□□□□ -1.73
USP28-210	ENST00000542033	FAM171A2	A8MVW0	826 aa		4.23	□□□□□ -1.73
USP28-210	ENST00000542033	IPO13	O94829	963 aa	Known RBP	4.23	□□□□□ -1.73
USP28-210	ENST00000542033	ENDOD1	O94919	500 aa		4.23	□□□□□ -1.73
USP28-210	ENST00000542033	CT47B1	P0C2W7	299 aa	Predicted RBP	4.23	□□□□□ -1.73
USP28-210	ENST00000542033	GNAT2	P19087	354 aa		4.23	□□□□□ -1.73
USP28-210	ENST00000542033	C5AR1	P21730	350 aa		4.23	□□□□□ -1.73
USP28-210	ENST00000542033	ACRV1	P26436	265 aa		4.23	□□□□□ -1.73
USP28-210	ENST00000542033	CRHR1	P34998	444 aa		4.23	□□□□□ -1.73
USP28-210	ENST00000542033	PTPN7	P35236	360 aa		4.23	□□□□□ -1.73
USP28-210	ENST00000542033	GZMK	P49863	264 aa		4.23	□□□□□ -1.73
USP28-210	ENST00000542033	KRTAP10-2	P60368	255 aa		4.23	□□□□□ -1.73
USP28-210	ENST00000542033	KIF23	Q02241	960 aa	Predicted RBP	4.23	□□□□□ -1.73
USP28-210	ENST00000542033	APBA1	Q02410	837 aa		4.23	□□□□□ -1.73
USP28-210	ENST00000542033	TTF1	Q15361	905 aa	Predicted RBP	4.23	□□□□□ -1.73
USP28-210	ENST00000542033	CDSN	Q15517	529 aa		4.23	□□□□□ -1.73
USP28-210	ENST00000542033	MST1L	Q2TV78	715 aa		4.23	□□□□□ -1.73
USP28-210	ENST00000542033	ODR4	Q5SWX8	454 aa		4.23	□□□□□ -1.73
USP28-210	ENST00000542033		Q6ZSN1	163 aa		4.23	□□□□□ -1.73
USP28-210	ENST00000542033	ZNF808	Q8N4W9	903 aa	Predicted RBP	4.23	□□□□□ -1.73
USP28-210	ENST00000542033	MIEF2	Q96C03	454 aa		4.23	□□□□□ -1.73
USP28-210	ENST00000542033	IL17RA	Q96F46	866 aa		4.23	□□□□□ -1.73
USP28-210	ENST00000542033	C7orf25	Q9BPX7	421 aa		4.23	□□□□□ -1.73
USP28-210	ENST00000542033	CHPF2	Q9P2E5	772 aa		4.23	□□□□□ -1.73
USP28-210	ENST00000542033	SCOC	Q9UIL1	159 aa		4.23	□□□□□ -1.73
USP28-210	ENST00000542033	HDAC5	Q9UQL6	1122 aa		4.23	□□□□□ -1.73
USP28-210	ENST00000542033	LUC7L2	Q9Y383	392 aa	Known RBP	4.23	□□□□□ -1.73
USP28-210	ENST00000542033	MFAP3L	O75121	409 aa		4.22	□□□□□ -1.73
USP28-210	ENST00000542033	PPP3CA	Q08209	521 aa		4.22	□□□□□ -1.73
USP28-210	ENST00000542033	MGAT2	Q10469	447 aa		4.22	□□□□□ -1.73
USP28-210	ENST00000542033	CRHR2	Q13324	411 aa		4.22	□□□□□ -1.73
USP28-210	ENST00000542033	ELAVL1	Q15717	326 aa	Known RBP	4.22	□□□□□ -1.73
USP28-210	ENST00000542033	NRN1L	Q496H8	165 aa		4.22	□□□□□ -1.73
USP28-210	ENST00000542033	MIGA2	Q7L4E1	593 aa		4.22	□□□□□ -1.73
USP28-210	ENST00000542033	GSPT2	Q8IYD1	628 aa	Known RBP	4.22	□□□□□ -1.73
USP28-210	ENST00000542033	MIER2	Q8N344	545 aa		4.22	□□□□□ -1.73
USP28-210	ENST00000542033	OR7D4	Q8NG98	312 aa		4.22	□□□□□ -1.73
USP28-210	ENST00000542033	MDM1	Q8TC05	714 aa		4.22	□□□□□ -1.73
USP28-210	ENST00000542033	NRG4	Q8WWG1	115 aa		4.22	□□□□□ -1.73
USP28-210	ENST00000542033	HOOK2	Q96ED9	719 aa		4.22	□□□□□ -1.73
USP28-210	ENST00000542033	ZNF512	Q96ME7	567 aa	Predicted RBP	4.22	□□□□□ -1.73
USP28-210	ENST00000542033	PCGF6	Q9BYE7	350 aa		4.22	□□□□□ -1.73
USP28-210	ENST00000542033	SENP6	Q9GZR1	1112 aa	Predicted RBP	4.22	□□□□□ -1.73
USP28-210	ENST00000542033	CSRNP2	Q9H175	543 aa		4.22	□□□□□ -1.73
USP28-210	ENST00000542033	BCO1	Q9HAY6	547 aa		4.22	□□□□□ -1.73
USP28-210	ENST00000542033	TUBD1	Q9UJT1	453 aa		4.22	□□□□□ -1.73
USP28-210	ENST00000542033	INTU	Q9ULD6	942 aa		4.22	□□□□□ -1.73
USP28-210	ENST00000542033	E2F8	A0AVK6	867 aa		4.21	□□□□□ -1.74
USP28-210	ENST00000542033	MATN3	O15232	486 aa		4.21	□□□□□ -1.74
USP28-210	ENST00000542033	HOXA3	O43365	443 aa	Predicted RBP	4.21	□□□□□ -1.74
USP28-210	ENST00000542033	IL33	O95760	270 aa		4.21	□□□□□ -1.74
USP28-210	ENST00000542033	TNFRSF1A	P19438	455 aa		4.21	□□□□□ -1.74
USP28-210	ENST00000542033	EPHB1	P54762	984 aa		4.21	□□□□□ -1.74
USP28-210	ENST00000542033	ADK	P55263	362 aa	Known RBP	4.21	□□□□□ -1.74
USP28-210	ENST00000542033	MRPL49	Q13405	166 aa	Known RBP	4.21	□□□□□ -1.74
USP28-210	ENST00000542033	ODF1	Q14990	250 aa		4.21	□□□□□ -1.74
USP28-210	ENST00000542033	FAM214A	Q32MH5	1076 aa		4.21	□□□□□ -1.74
USP28-210	ENST00000542033	UAP1L1	Q3KQV9	507 aa		4.21	□□□□□ -1.74
USP28-210	ENST00000542033	USP39	Q53GS9	565 aa	Known RBP	4.21	□□□□□ -1.74
USP28-210	ENST00000542033	TMEM240	Q5SV17	173 aa		4.21	□□□□□ -1.74
USP28-210	ENST00000542033	RNF207	Q6ZRF8	634 aa		4.21	□□□□□ -1.74
USP28-210	ENST00000542033		Q6ZVL8	140 aa		4.21	□□□□□ -1.74
USP28-210	ENST00000542033	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	4.21	□□□□□ -1.74
USP28-210	ENST00000542033	SPRED1	Q7Z699	444 aa		4.21	□□□□□ -1.74
USP28-210	ENST00000542033	GGN	Q86UU5	652 aa		4.21	□□□□□ -1.74
USP28-210	ENST00000542033	ELOA2	Q8IYF1	753 aa	Predicted RBP	4.21	□□□□□ -1.74
USP28-210	ENST00000542033	PQLC1	Q8N2U9	271 aa		4.21	□□□□□ -1.74
USP28-210	ENST00000542033	JDP2	Q8WYK2	163 aa		4.21	□□□□□ -1.74
USP28-210	ENST00000542033	DPF2	Q92785	391 aa		4.21	□□□□□ -1.74
USP28-210	ENST00000542033	HDAC10	Q969S8	669 aa		4.21	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms