RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 SRGAP2BP0DMP2 458 aa9.23□□□□□ -0.93
CHD4-208ENST00000540960 MTHFRP42898 656 aa9.23□□□□□ -0.93
CHD4-208ENST00000540960 AFMP43652 599 aa9.23□□□□□ -0.93
CHD4-208ENST00000540960 GRIN1Q05586 938 aa9.23□□□□□ -0.93
CHD4-208ENST00000540960 ITIH3Q06033 890 aa9.23□□□□□ -0.93
CHD4-208ENST00000540960 USH1GQ495M9 461 aa9.23□□□□□ -0.93
CHD4-208ENST00000540960 HYIQ5T013 277 aa9.23□□□□□ -0.93
CHD4-208ENST00000540960 RTN4RL1Q86UN2 441 aaPredicted RBP9.23□□□□□ -0.93
CHD4-208ENST00000540960 PDZD3Q86UT5 571 aa9.23□□□□□ -0.93
CHD4-208ENST00000540960 CCDC112Q8NEF3 446 aa9.23□□□□□ -0.93
CHD4-208ENST00000540960 SNX29Q8TEQ0 813 aa9.23□□□□□ -0.93
CHD4-208ENST00000540960 LINC01599Q8WXQ3 324 aa9.23□□□□□ -0.93
CHD4-208ENST00000540960 NELL1Q92832 810 aa9.23□□□□□ -0.93
CHD4-208ENST00000540960 IQCDQ96DY2 449 aa9.23□□□□□ -0.93
CHD4-208ENST00000540960 KIF12Q96FN5 646 aa9.23□□□□□ -0.93
CHD4-208ENST00000540960 MPHOSPH6Q99547 160 aaKnown RBP9.23□□□□□ -0.93
CHD4-208ENST00000540960 TMEM60Q9H2L4 133 aa9.23□□□□□ -0.93
CHD4-208ENST00000540960 KCNMB3Q9NPA1 279 aa9.23□□□□□ -0.93
CHD4-208ENST00000540960 SPATA6Q9NWH7 488 aaPredicted RBP9.23□□□□□ -0.93
CHD4-208ENST00000540960 ZSCAN32Q9NX65 697 aa9.23□□□□□ -0.93
CHD4-208ENST00000540960 TMEM260Q9NX78 707 aa9.23□□□□□ -0.93
CHD4-208ENST00000540960 ANKFY1Q9P2R3 1169 aa9.23□□□□□ -0.93
CHD4-208ENST00000540960 MAGEC2Q9UBF1 373 aaPredicted RBP9.23□□□□□ -0.93
CHD4-208ENST00000540960 USTQ9Y2C2 406 aa9.23□□□□□ -0.93
CHD4-208ENST00000540960 MYH6P13533 1939 aa9.23□□□□□ -0.93
CHD4-208ENST00000540960 C2orf16Q68DN1 1984 aa9.23□□□□□ -0.93
CHD4-208ENST00000540960 FNDC1Q4ZHG4 1894 aaPredicted RBP9.22□□□□□ -0.93
CHD4-208ENST00000540960 NFIBO00712 420 aa9.22□□□□□ -0.93
CHD4-208ENST00000540960 TREHO43280 583 aa9.22□□□□□ -0.93
CHD4-208ENST00000540960 ZNF500O60304 480 aaPredicted RBP9.22□□□□□ -0.93
CHD4-208ENST00000540960 TBC1D4O60343 1298 aa9.22□□□□□ -0.93
CHD4-208ENST00000540960 DKC1O60832 514 aaKnown RBP eCLIP9.22□□□□□ -0.93
CHD4-208ENST00000540960 FGF18O76093 207 aa9.22□□□□□ -0.93
CHD4-208ENST00000540960 KCNK5O95279 499 aa9.22□□□□□ -0.93
CHD4-208ENST00000540960 F2P00734 622 aa9.22□□□□□ -0.93
CHD4-208ENST00000540960 CFBP00751 764 aa9.22□□□□□ -0.93
CHD4-208ENST00000540960 TUBB4AP04350 444 aa9.22□□□□□ -0.93
CHD4-208ENST00000540960 CLCN1P35523 988 aa9.22□□□□□ -0.93
CHD4-208ENST00000540960 CCT6AP40227 531 aaKnown RBP9.22□□□□□ -0.93
CHD4-208ENST00000540960 HSD17B4P51659 736 aa9.22□□□□□ -0.93
CHD4-208ENST00000540960 UBASH3AP57075 661 aa9.22□□□□□ -0.93
CHD4-208ENST00000540960 PAK1Q13153 545 aa9.22□□□□□ -0.93
CHD4-208ENST00000540960 KARSQ15046 597 aaKnown RBP9.22□□□□□ -0.93
CHD4-208ENST00000540960 IL17AQ16552 155 aa9.22□□□□□ -0.93
CHD4-208ENST00000540960 DGKDQ16760 1214 aa9.22□□□□□ -0.93
CHD4-208ENST00000540960 UBE2SQ16763 222 aa9.22□□□□□ -0.93
CHD4-208ENST00000540960 IL31Q6EBC2 164 aa9.22□□□□□ -0.93
CHD4-208ENST00000540960 PHLDB3Q6NSJ2 640 aa9.22□□□□□ -0.93
CHD4-208ENST00000540960 USP17L6PQ6QN14 398 aa9.22□□□□□ -0.93
CHD4-208ENST00000540960 USP49Q70CQ1 688 aa9.22□□□□□ -0.93
CHD4-208ENST00000540960 CCDC65Q8IXS2 484 aa9.22□□□□□ -0.93
CHD4-208ENST00000540960 CMTR2Q8IYT2 770 aaKnown RBP9.22□□□□□ -0.93
CHD4-208ENST00000540960 GPR152Q8TDT2 470 aa9.22□□□□□ -0.93
CHD4-208ENST00000540960 CRYGNQ8WXF5 182 aa9.22□□□□□ -0.93
CHD4-208ENST00000540960 DDX1Q92499 740 aaKnown RBP9.22□□□□□ -0.93
CHD4-208ENST00000540960 LARP4BQ92615 738 aaKnown RBP9.22□□□□□ -0.93
CHD4-208ENST00000540960 APBB2Q92870 758 aa9.22□□□□□ -0.93
CHD4-208ENST00000540960 ATP6V0A1Q93050 837 aa9.22□□□□□ -0.93
CHD4-208ENST00000540960 CDHR1Q96JP9 859 aa9.22□□□□□ -0.93
CHD4-208ENST00000540960 RIT2Q99578 217 aa9.22□□□□□ -0.93
CHD4-208ENST00000540960 POLR3CQ9BUI4 534 aaPredicted RBP9.22□□□□□ -0.93
CHD4-208ENST00000540960 TUFT1Q9NNX1 390 aa9.22□□□□□ -0.93
CHD4-208ENST00000540960 RXFP3Q9NSD7 469 aa9.22□□□□□ -0.93
CHD4-208ENST00000540960 CACNA2D2Q9NY47 1150 aa9.22□□□□□ -0.93
CHD4-208ENST00000540960 KCND2Q9NZV8 630 aa9.22□□□□□ -0.93
CHD4-208ENST00000540960 FBXO4Q9UKT5 387 aa9.22□□□□□ -0.93
CHD4-208ENST00000540960 DNM3Q9UQ16 869 aa9.22□□□□□ -0.93
CHD4-208ENST00000540960 MTF2Q9Y483 593 aaPredicted RBP9.22□□□□□ -0.93
CHD4-208ENST00000540960 HCFC2Q9Y5Z7 792 aa9.22□□□□□ -0.93
CHD4-208ENST00000540960 TEP1Q99973 2627 aaKnown RBP9.21□□□□□ -0.93
CHD4-208ENST00000540960 KIAA1217Q5T5P2 1943 aa9.21□□□□□ -0.93
CHD4-208ENST00000540960 ZNF462Q96JM2 2506 aa9.21□□□□□ -0.94
CHD4-208ENST00000540960 TMEM8BA6NDV4 472 aa9.21□□□□□ -0.94
CHD4-208ENST00000540960 LAMTOR5O43504 91 aa9.21□□□□□ -0.94
CHD4-208ENST00000540960 N4BP1O75113 896 aaKnown RBP9.21□□□□□ -0.94
CHD4-208ENST00000540960 TDP2O95551 362 aa9.21□□□□□ -0.94
CHD4-208ENST00000540960 GH1P01241 217 aa9.21□□□□□ -0.94
CHD4-208ENST00000540960 CHRNA1P02708 482 aa9.21□□□□□ -0.94
CHD4-208ENST00000540960 PRB1P04280 392 aa9.21□□□□□ -0.94
CHD4-208ENST00000540960 GHRP10912 638 aa9.21□□□□□ -0.94
CHD4-208ENST00000540960 PLCG1P19174 1290 aa9.21□□□□□ -0.94
CHD4-208ENST00000540960 EEF1GP26641 437 aaKnown RBP9.21□□□□□ -0.94
CHD4-208ENST00000540960 RPA1P27694 616 aa9.21□□□□□ -0.94
CHD4-208ENST00000540960 ASIC1P78348 528 aa9.21□□□□□ -0.94
CHD4-208ENST00000540960 FANCCQ00597 558 aa9.21□□□□□ -0.94
CHD4-208ENST00000540960 C1QBPQ07021 282 aaKnown RBP9.21□□□□□ -0.94
CHD4-208ENST00000540960 PDE4DQ08499 809 aa9.21□□□□□ -0.94
CHD4-208ENST00000540960 FOXC1Q12948 553 aa9.21□□□□□ -0.94
CHD4-208ENST00000540960 TMEM119Q4V9L6 283 aa9.21□□□□□ -0.94
CHD4-208ENST00000540960 CEP55Q53EZ4 464 aa9.21□□□□□ -0.94
CHD4-208ENST00000540960 PRR16Q569H4 304 aa9.21□□□□□ -0.94
CHD4-208ENST00000540960 KIAA1841Q6NSI8 718 aa9.21□□□□□ -0.94
CHD4-208ENST00000540960 SLC30A10Q6XR72 485 aa9.21□□□□□ -0.94
CHD4-208ENST00000540960 STXBP4Q6ZWJ1 553 aa9.21□□□□□ -0.94
CHD4-208ENST00000540960 UNC13DQ70J99 1090 aa9.21□□□□□ -0.94
CHD4-208ENST00000540960 GIMAP8Q8ND71 665 aaPredicted RBP9.21□□□□□ -0.94
CHD4-208ENST00000540960 PJA1Q8NG27 643 aa9.21□□□□□ -0.94
CHD4-208ENST00000540960 RAD54LQ92698 747 aa9.21□□□□□ -0.94
CHD4-208ENST00000540960 CASP10Q92851 521 aa9.21□□□□□ -0.94
CHD4-208ENST00000540960 BORCS6Q96GS4 357 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms