RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 ARF4P18085 180 aaPredicted RBP15.1■□□□□ 0.01
SS18-204ENST00000539244 ARL2P36404 184 aa15.1■□□□□ 0.01
SS18-204ENST00000539244 SCNN1GP51170 649 aa15.1■□□□□ 0.01
SS18-204ENST00000539244 FOXK2Q01167 660 aa15.1■□□□□ 0.01
SS18-204ENST00000539244 NCBP1Q09161 790 aaKnown RBP15.1■□□□□ 0.01
SS18-204ENST00000539244 CAPSQ13938 189 aa15.1■□□□□ 0.01
SS18-204ENST00000539244 TPH2Q8IWU9 490 aa15.1■□□□□ 0.01
SS18-204ENST00000539244 HACE1Q8IYU2 909 aa15.1■□□□□ 0.01
SS18-204ENST00000539244 SIX5Q8N196 739 aa15.1■□□□□ 0.01
SS18-204ENST00000539244 GSTCDQ8NEC7 633 aa15.1■□□□□ 0.01
SS18-204ENST00000539244 TNFRSF25Q93038 417 aa15.1■□□□□ 0.01
SS18-204ENST00000539244 NKD2Q969F2 451 aaPredicted RBP15.1■□□□□ 0.01
SS18-204ENST00000539244 ZNF707Q96C28 371 aaPredicted RBP15.1■□□□□ 0.01
SS18-204ENST00000539244 CPB2Q96IY4 423 aa15.1■□□□□ 0.01
SS18-204ENST00000539244 PLEKHA4Q9H4M7 779 aa15.1■□□□□ 0.01
SS18-204ENST00000539244 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.1■□□□□ 0.01
SS18-204ENST00000539244 ANKEF1Q9NU02 776 aa15.1■□□□□ 0.01
SS18-204ENST00000539244 FNIP2Q9P278 1114 aa15.1■□□□□ 0.01
SS18-204ENST00000539244 FBXL21Q9UKT6 434 aa15.1■□□□□ 0.01
SS18-204ENST00000539244 HES2Q9Y543 173 aa15.1■□□□□ 0.01
SS18-204ENST00000539244 DCHS1Q96JQ0 3298 aa15.1■□□□□ 0.01
SS18-204ENST00000539244 F8W810 466 aa15.09■□□□□ 0.01
SS18-204ENST00000539244 NARSO43776 548 aaKnown RBP15.09■□□□□ 0.01
SS18-204ENST00000539244 MARCH6O60337 910 aa15.09■□□□□ 0.01
SS18-204ENST00000539244 RFPL2O75678 378 aa15.09■□□□□ 0.01
SS18-204ENST00000539244 CTDNEP1O95476 244 aa15.09■□□□□ 0.01
SS18-204ENST00000539244 FUT10Q6P4F1 479 aa15.09■□□□□ 0.01
SS18-204ENST00000539244 FRMD5Q7Z6J6 570 aa15.09■□□□□ 0.01
SS18-204ENST00000539244 DTWD2Q8NBA8 298 aa15.09■□□□□ 0.01
SS18-204ENST00000539244 ASAP3Q8TDY4 903 aa15.09■□□□□ 0.01
SS18-204ENST00000539244 EIF2AK1Q9BQI3 630 aaKnown RBP15.09■□□□□ 0.01
SS18-204ENST00000539244 COLEC11Q9BWP8 271 aa15.09■□□□□ 0.01
SS18-204ENST00000539244 NXF3Q9H4D5 531 aaKnown RBP15.09■□□□□ 0.01
SS18-204ENST00000539244 ZDHHC7Q9NXF8 308 aa15.09■□□□□ 0.01
SS18-204ENST00000539244 TPCN1Q9ULQ1 816 aa15.09■□□□□ 0.01
SS18-204ENST00000539244 SPTBN4Q9H254 2564 aa15.09■□□□□ 0.01
SS18-204ENST00000539244 A0A1B0GUA9 196 aa15.08■□□□□ 0
SS18-204ENST00000539244 FAM205CA6NFA0 338 aa15.08■□□□□ 0
SS18-204ENST00000539244 GLRA2P23416 452 aa15.08■□□□□ 0
SS18-204ENST00000539244 GBP2P32456 591 aaPredicted RBP15.08■□□□□ 0
SS18-204ENST00000539244 RARRES1P49788 294 aa15.08■□□□□ 0
SS18-204ENST00000539244 GRIK3Q13003 919 aa15.08■□□□□ 0
SS18-204ENST00000539244 NR5A1Q13285 461 aa15.08■□□□□ 0
SS18-204ENST00000539244 ANGPT1Q15389 498 aa15.08■□□□□ 0
SS18-204ENST00000539244 USP41Q3LFD5 358 aa15.08■□□□□ 0
SS18-204ENST00000539244 SLC27A1Q6PCB7 646 aa15.08■□□□□ 0
SS18-204ENST00000539244 LILRA6Q6PI73 481 aa15.08■□□□□ 0
SS18-204ENST00000539244 SMG7Q92540 1137 aaKnown RBP15.08■□□□□ 0
SS18-204ENST00000539244 WASF1Q92558 559 aa15.08■□□□□ 0
SS18-204ENST00000539244 MYADMQ96S97 322 aa15.08■□□□□ 0
SS18-204ENST00000539244 GPR62Q9BZJ7 368 aa15.08■□□□□ 0
SS18-204ENST00000539244 TRIM6Q9C030 488 aaPredicted RBP15.08■□□□□ 0
SS18-204ENST00000539244 NT5C3AQ9H0P0 336 aa15.08■□□□□ 0
SS18-204ENST00000539244 ADAM28Q9UKQ2 775 aa15.08■□□□□ 0
SS18-204ENST00000539244 PCDHA12Q9UN75 941 aa15.08■□□□□ 0
SS18-204ENST00000539244 GVINP1Q7Z2Y8 2422 aa15.07■□□□□ 0
SS18-204ENST00000539244 KRBA1A5PL33 1030 aa15.07■□□□□ 0
SS18-204ENST00000539244 TGM5O43548 720 aa15.07■□□□□ 0
SS18-204ENST00000539244 SRFP11831 508 aa15.07■□□□□ 0
SS18-204ENST00000539244 XRCC6P12956 609 aaKnown RBP eCLIP15.07■□□□□ 0
SS18-204ENST00000539244 KRT2P35908 639 aa15.07■□□□□ 0
SS18-204ENST00000539244 CREMQ03060 361 aa15.07■□□□□ 0
SS18-204ENST00000539244 SLC44A3Q8N4M1 653 aa15.07■□□□□ 0
SS18-204ENST00000539244 RSAD2Q8WXG1 361 aa15.07■□□□□ 0
SS18-204ENST00000539244 PRIMPOLQ96LW4 560 aa15.07■□□□□ 0
SS18-204ENST00000539244 PRKD2Q9BZL6 878 aa15.07■□□□□ 0
SS18-204ENST00000539244 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.07■□□□□ 0
SS18-204ENST00000539244 ORC3Q9UBD5 711 aaPredicted RBP15.07■□□□□ 0
SS18-204ENST00000539244 ANHXE9PGG2 379 aa15.06■□□□□ 0
SS18-204ENST00000539244 B4GALT5O43286 388 aa15.06■□□□□ 0
SS18-204ENST00000539244 CFHP08603 1231 aa15.06■□□□□ 0
SS18-204ENST00000539244 LAMP2P13473 410 aa15.06■□□□□ 0
SS18-204ENST00000539244 FDPSP14324 419 aaKnown RBP15.06■□□□□ 0
SS18-204ENST00000539244 AKAP5P24588 427 aa15.06■□□□□ 0
SS18-204ENST00000539244 CALCRLQ16602 461 aa15.06■□□□□ 0
SS18-204ENST00000539244 PPP4R3CPQ6ZMV5 832 aa15.06■□□□□ 0
SS18-204ENST00000539244 B3GALT6Q96L58 329 aa15.06■□□□□ 0
SS18-204ENST00000539244 APOL6Q9BWW8 343 aa15.06■□□□□ 0
SS18-204ENST00000539244 TTC12Q9H892 705 aaPredicted RBP15.06■□□□□ 0
SS18-204ENST00000539244 BRMS1Q9HCU9 246 aa15.06■□□□□ 0
SS18-204ENST00000539244 DOCK6Q96HP0 2047 aa15.05■□□□□ 0
SS18-204ENST00000539244 ZMYND10O75800 440 aa15.05■□□□□ -0
SS18-204ENST00000539244 NPTXRO95502 500 aa15.05■□□□□ -0
SS18-204ENST00000539244 SPATA31D3P0C874 917 aa15.05■□□□□ -0
SS18-204ENST00000539244 HSP90AA2PQ14568 343 aaPredicted RBP15.05■□□□□ -0
SS18-204ENST00000539244 FAM187BQ17R55 369 aa15.05■□□□□ -0
SS18-204ENST00000539244 CDCA2Q69YH5 1023 aaPredicted RBP15.05■□□□□ -0
SS18-204ENST00000539244 PHLDB3Q6NSJ2 640 aa15.05■□□□□ -0
SS18-204ENST00000539244 POTEGQ6S5H5 508 aa15.05■□□□□ -0
SS18-204ENST00000539244 SPATA31D4Q6ZUB0 917 aa15.05■□□□□ -0
SS18-204ENST00000539244 PALB2Q86YC2 1186 aa15.05■□□□□ -0
SS18-204ENST00000539244 RIN2Q8WYP3 895 aaPredicted RBP15.05■□□□□ -0
SS18-204ENST00000539244 CCDC43Q96MW1 224 aaKnown RBP15.05■□□□□ -0
SS18-204ENST00000539244 MTMR9Q96QG7 549 aa15.05■□□□□ -0
SS18-204ENST00000539244 POLR3FQ9H1D9 316 aaPredicted RBP15.05■□□□□ -0
SS18-204ENST00000539244 SEMA4AQ9H3S1 761 aa15.05■□□□□ -0
SS18-204ENST00000539244 SLC2A4RGQ9NR83 387 aa15.05■□□□□ -0
SS18-204ENST00000539244 PRMT7Q9NVM4 692 aaPredicted RBP15.05■□□□□ -0
SS18-204ENST00000539244 ZFP37Q9Y6Q3 630 aaPredicted RBP15.05■□□□□ -0
SS18-204ENST00000539244 SF3B1O75533 1304 aaKnown RBP eCLIP15.04■□□□□ -04e-6■■■■■ 96
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms