RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-208ENST00000536710 VWA3BQ502W6 1294 aa6.77□□□□□ -1.33
PRKDC-208ENST00000536710 RNF220Q5VTB9 566 aa6.77□□□□□ -1.33
PRKDC-208ENST00000536710 AGBL4Q5VU57 503 aa6.77□□□□□ -1.33
PRKDC-208ENST00000536710 ZDHHC14Q8IZN3 488 aa6.77□□□□□ -1.33
PRKDC-208ENST00000536710 FAM43AQ8N2R8 423 aa6.77□□□□□ -1.33
PRKDC-208ENST00000536710 SH2D3CQ8N5H7 860 aa6.77□□□□□ -1.33
PRKDC-208ENST00000536710 TXNDC5Q8NBS9 432 aaKnown RBP6.77□□□□□ -1.33
PRKDC-208ENST00000536710 C3orf20Q8ND61 904 aa6.77□□□□□ -1.33
PRKDC-208ENST00000536710 FBXO18Q8NFZ0 1043 aa6.77□□□□□ -1.33
PRKDC-208ENST00000536710 OR14K1Q8NGZ2 314 aa6.77□□□□□ -1.33
PRKDC-208ENST00000536710 NSUN6Q8TEA1 469 aaKnown RBP6.77□□□□□ -1.33
PRKDC-208ENST00000536710 PARD3BQ8TEW8 1205 aa6.77□□□□□ -1.33
PRKDC-208ENST00000536710 HOXB13Q92826 284 aaPredicted RBP6.77□□□□□ -1.33
PRKDC-208ENST00000536710 SLC7A6OSQ96CW6 309 aaPredicted RBP6.77□□□□□ -1.33
PRKDC-208ENST00000536710 FAM84AQ96KN4 292 aa6.77□□□□□ -1.33
PRKDC-208ENST00000536710 OR10A2Q9H208 303 aa6.77□□□□□ -1.33
PRKDC-208ENST00000536710 MYH16Q9H6N6 1097 aa6.77□□□□□ -1.33
PRKDC-208ENST00000536710 BCO1Q9HAY6 547 aa6.77□□□□□ -1.33
PRKDC-208ENST00000536710 LANCL2Q9NS86 450 aa6.77□□□□□ -1.33
PRKDC-208ENST00000536710 GPRC5DQ9NZD1 345 aa6.77□□□□□ -1.33
PRKDC-208ENST00000536710 NCDNQ9UBB6 729 aa6.77□□□□□ -1.33
PRKDC-208ENST00000536710 POLHQ9Y253 713 aa6.77□□□□□ -1.33
PRKDC-208ENST00000536710 CTDP1Q9Y5B0 961 aaPredicted RBP6.77□□□□□ -1.33
PRKDC-208ENST00000536710 PCDHA3Q9Y5H8 950 aa6.77□□□□□ -1.33
PRKDC-208ENST00000536710 MYBBP1AQ9BQG0 1328 aaKnown RBP6.76□□□□□ -1.33
PRKDC-208ENST00000536710 CFAP69A5D8W1 941 aa6.76□□□□□ -1.33
PRKDC-208ENST00000536710 PLEKHD1A6NEE1 506 aa6.76□□□□□ -1.33
PRKDC-208ENST00000536710 ADCY6O43306 1168 aa6.76□□□□□ -1.33
PRKDC-208ENST00000536710 ITGA10O75578 1167 aa6.76□□□□□ -1.33
PRKDC-208ENST00000536710 FARP2O94887 1054 aaPredicted RBP6.76□□□□□ -1.33
PRKDC-208ENST00000536710 HRGP04196 525 aa6.76□□□□□ -1.33
PRKDC-208ENST00000536710 CSF2RBP32927 897 aa6.76□□□□□ -1.33
PRKDC-208ENST00000536710 PTPN7P35236 360 aa6.76□□□□□ -1.33
PRKDC-208ENST00000536710 WNT3AP56704 352 aa6.76□□□□□ -1.33
PRKDC-208ENST00000536710 BPIFB4P59827 614 aa6.76□□□□□ -1.33
PRKDC-208ENST00000536710 ATP2C1P98194 919 aaPredicted RBP6.76□□□□□ -1.33
PRKDC-208ENST00000536710 TARDBPQ13148 414 aaKnown RBP eCLIP6.76□□□□□ -1.33
PRKDC-208ENST00000536710 NOGQ13253 232 aa6.76□□□□□ -1.33
PRKDC-208ENST00000536710 ACAP1Q15027 740 aa6.76□□□□□ -1.33
PRKDC-208ENST00000536710 CNN3Q15417 329 aaKnown RBP6.76□□□□□ -1.33
PRKDC-208ENST00000536710 ZNF568Q3ZCX4 644 aa6.76□□□□□ -1.33
PRKDC-208ENST00000536710 KHDC1Q4VXA5 237 aaKnown RBP6.76□□□□□ -1.33
PRKDC-208ENST00000536710 ZNF385BQ569K4 471 aa6.76□□□□□ -1.33
PRKDC-208ENST00000536710 ZMAT1Q5H9K5 638 aa6.76□□□□□ -1.33
PRKDC-208ENST00000536710 EXOC8Q8IYI6 725 aa6.76□□□□□ -1.33
PRKDC-208ENST00000536710 KIAA0319LQ8IZA0 1049 aa6.76□□□□□ -1.33
PRKDC-208ENST00000536710 OR7D4Q8NG98 312 aa6.76□□□□□ -1.33
PRKDC-208ENST00000536710 STON2Q8WXE9 905 aa6.76□□□□□ -1.33
PRKDC-208ENST00000536710 LPPQ93052 612 aa6.76□□□□□ -1.33
PRKDC-208ENST00000536710 MTFMTQ96DP5 389 aaKnown RBP6.76□□□□□ -1.33
PRKDC-208ENST00000536710 AJUBAQ96IF1 538 aa6.76□□□□□ -1.33
PRKDC-208ENST00000536710 VRK1Q99986 396 aaPredicted RBP6.76□□□□□ -1.33
PRKDC-208ENST00000536710 APOL5Q9BWW9 433 aa6.76□□□□□ -1.33
PRKDC-208ENST00000536710 BHMT2Q9H2M3 363 aa6.76□□□□□ -1.33
PRKDC-208ENST00000536710 LMBRD1Q9NUN5 540 aa6.76□□□□□ -1.33
PRKDC-208ENST00000536710 TMEM140Q9NV12 185 aa6.76□□□□□ -1.33
PRKDC-208ENST00000536710 STAP2Q9UGK3 403 aa6.76□□□□□ -1.33
PRKDC-208ENST00000536710 L1RE1Q9UN81 338 aa6.76□□□□□ -1.33
PRKDC-208ENST00000536710 SMG5Q9UPR3 1016 aaKnown RBP6.76□□□□□ -1.33
PRKDC-208ENST00000536710 SIK3Q9Y2K2 1263 aa6.76□□□□□ -1.33
PRKDC-208ENST00000536710 GOLIM4O00461 696 aa6.75□□□□□ -1.33
PRKDC-208ENST00000536710 MGEA5O60502 916 aa6.75□□□□□ -1.33
PRKDC-208ENST00000536710 LDHAP00338 332 aaKnown RBP6.75□□□□□ -1.33
PRKDC-208ENST00000536710 MED14OSP0DP75 135 aa6.75□□□□□ -1.33
PRKDC-208ENST00000536710 GYPEP15421 78 aa6.75□□□□□ -1.33
PRKDC-208ENST00000536710 PEX2P28328 305 aa6.75□□□□□ -1.33
PRKDC-208ENST00000536710 SMARCA1P28370 1054 aa6.75□□□□□ -1.33
PRKDC-208ENST00000536710 SREBF1P36956 1147 aa6.75□□□□□ -1.33
PRKDC-208ENST00000536710 HK3P52790 923 aa6.75□□□□□ -1.33
PRKDC-208ENST00000536710 MESP2Q0VG99 397 aa6.75□□□□□ -1.33
PRKDC-208ENST00000536710 USP30Q70CQ3 517 aa6.75□□□□□ -1.33
PRKDC-208ENST00000536710 HEATR3Q7Z4Q2 680 aa6.75□□□□□ -1.33
PRKDC-208ENST00000536710 C11orf96Q7Z7L8 435 aa6.75□□□□□ -1.33
PRKDC-208ENST00000536710 RALYLQ86SE5 291 aaKnown RBP6.75□□□□□ -1.33
PRKDC-208ENST00000536710 CARFQ8N187 725 aa6.75□□□□□ -1.33
PRKDC-208ENST00000536710 KLHL36Q8N4N3 616 aa6.75□□□□□ -1.33
PRKDC-208ENST00000536710 ANKRD53Q8N9V6 530 aa6.75□□□□□ -1.33
PRKDC-208ENST00000536710 REPS2Q8NFH8 660 aa6.75□□□□□ -1.33
PRKDC-208ENST00000536710 CYFIP2Q96F07 1278 aa6.75□□□□□ -1.33
PRKDC-208ENST00000536710 SLC35A4Q96G79 324 aa6.75□□□□□ -1.33
PRKDC-208ENST00000536710 TNIP3Q96KP6 325 aa6.75□□□□□ -1.33
PRKDC-208ENST00000536710 RPL10LQ96L21 214 aaKnown RBP6.75□□□□□ -1.33
PRKDC-208ENST00000536710 PPP1R16BQ96T49 567 aa6.75□□□□□ -1.33
PRKDC-208ENST00000536710 SLC38A3Q99624 504 aa6.75□□□□□ -1.33
PRKDC-208ENST00000536710 ABCF2Q9UG63 623 aa6.75□□□□□ -1.33
PRKDC-208ENST00000536710 TRPS1Q9UHF7 1281 aa6.75□□□□□ -1.33
PRKDC-208ENST00000536710 AJAP1Q9UKB5 411 aaPredicted RBP6.75□□□□□ -1.33
PRKDC-208ENST00000536710 ADAM29Q9UKF5 820 aa6.75□□□□□ -1.33
PRKDC-208ENST00000536710 SH3D21A4FU49 640 aa6.74□□□□□ -1.33
PRKDC-208ENST00000536710 GPR32O75388 356 aa6.74□□□□□ -1.33
PRKDC-208ENST00000536710 GASTP01350 101 aa6.74□□□□□ -1.33
PRKDC-208ENST00000536710 C1QTNF9P0C862 333 aa6.74□□□□□ -1.33
PRKDC-208ENST00000536710 CRHR1P34998 444 aa6.74□□□□□ -1.33
PRKDC-208ENST00000536710 AFF3P51826 1226 aaKnown RBP6.74□□□□□ -1.33
PRKDC-208ENST00000536710 AGFG1P52594 562 aaKnown RBP6.74□□□□□ -1.33
PRKDC-208ENST00000536710 RAB1AP62820 205 aa6.74□□□□□ -1.33
PRKDC-208ENST00000536710 SEMA5AQ13591 1074 aa6.74□□□□□ -1.33
PRKDC-208ENST00000536710 RAB39AQ14964 217 aa6.74□□□□□ -1.33
PRKDC-208ENST00000536710 ZNF827Q17R98 1081 aa6.74□□□□□ -1.33
PRKDC-208ENST00000536710 MAEAQ7L5Y9 396 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms