RNA–Protein interactions for RNA: ENST00000534405.5

SMPD1-210, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene SMPD1, Length 2,446 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-210ENST00000534405 CNGA2Q16280 664 aa20.54■□□□□ 0.88
SMPD1-210ENST00000534405 MUM1Q2TAK8 710 aa20.54■□□□□ 0.88
SMPD1-210ENST00000534405 Q4G0T1 1027 aa20.54■□□□□ 0.88
SMPD1-210ENST00000534405 COL23A1Q86Y22 540 aaPredicted RBP20.54■□□□□ 0.88
SMPD1-210ENST00000534405 TAF4BQ92750 862 aa20.54■□□□□ 0.88
SMPD1-210ENST00000534405 GLT8D2Q9H1C3 349 aa20.54■□□□□ 0.88
SMPD1-210ENST00000534405 LRMDAQ9H2I8 198 aa20.54■□□□□ 0.88
SMPD1-210ENST00000534405 EPB41L4BQ9H329 900 aa20.54■□□□□ 0.88
SMPD1-210ENST00000534405 PDP2Q9P2J9 529 aa20.54■□□□□ 0.88
SMPD1-210ENST00000534405 PACSIN2Q9UNF0 486 aaPredicted RBP20.54■□□□□ 0.88
SMPD1-210ENST00000534405 GOLGB1Q14789 3259 aaKnown RBP20.54■□□□□ 0.88
SMPD1-210ENST00000534405 A0A087X0T9 212 aa20.54■□□□□ 0.88
SMPD1-210ENST00000534405 GDF11O95390 407 aa20.54■□□□□ 0.88
SMPD1-210ENST00000534405 FAM228BP0C875 321 aa20.54■□□□□ 0.88
SMPD1-210ENST00000534405 RPL13P26373 211 aaKnown RBP20.54■□□□□ 0.88
SMPD1-210ENST00000534405 KLRC1P26715 233 aa20.54■□□□□ 0.88
SMPD1-210ENST00000534405 CACNA2D1P54289 1103 aa20.54■□□□□ 0.88
SMPD1-210ENST00000534405 KCNH2Q12809 1159 aa20.54■□□□□ 0.88
SMPD1-210ENST00000534405 USH1GQ495M9 461 aa20.54■□□□□ 0.88
SMPD1-210ENST00000534405 SLFN12Q8IYM2 578 aa20.54■□□□□ 0.88
SMPD1-210ENST00000534405 FAM133AQ8N9E0 248 aa20.54■□□□□ 0.88
SMPD1-210ENST00000534405 PACSIN1Q9BY11 444 aa20.54■□□□□ 0.88
SMPD1-210ENST00000534405 TXLNGQ9NUQ3 528 aa20.54■□□□□ 0.88
SMPD1-210ENST00000534405 CCDC188H7C350 402 aa20.53■□□□□ 0.88
SMPD1-210ENST00000534405 NVLO15381 856 aaKnown RBP20.53■□□□□ 0.88
SMPD1-210ENST00000534405 FAM200BP0CF97 657 aa20.53■□□□□ 0.88
SMPD1-210ENST00000534405 ACTN1P12814 892 aa20.53■□□□□ 0.88
SMPD1-210ENST00000534405 NR2F2P24468 414 aa20.53■□□□□ 0.88
SMPD1-210ENST00000534405 IFNAR2P48551 515 aa20.53■□□□□ 0.88
SMPD1-210ENST00000534405 JAG1P78504 1218 aa20.53■□□□□ 0.88
SMPD1-210ENST00000534405 WASHC2DQ5SRD0 308 aa20.53■□□□□ 0.88
SMPD1-210ENST00000534405 DPY19L2P1Q6NXN4 242 aa20.53■□□□□ 0.88
SMPD1-210ENST00000534405 AGGF1Q8N302 714 aaeCLIP20.53■□□□□ 0.88
SMPD1-210ENST00000534405 GBP5Q96PP8 586 aa20.53■□□□□ 0.88
SMPD1-210ENST00000534405 PHACTR1Q9C0D0 580 aa20.53■□□□□ 0.88
SMPD1-210ENST00000534405 PITPNM2Q9BZ72 1349 aa20.53■□□□□ 0.88
SMPD1-210ENST00000534405 COL11A2P13942 1736 aaPredicted RBP20.53■□□□□ 0.88
SMPD1-210ENST00000534405 F5H6K3 240 aa20.53■□□□□ 0.88
SMPD1-210ENST00000534405 LGR5O75473 907 aa20.53■□□□□ 0.88
SMPD1-210ENST00000534405 SERPINB4P48594 390 aa20.53■□□□□ 0.88
SMPD1-210ENST00000534405 KLRC3Q07444 240 aa20.53■□□□□ 0.88
SMPD1-210ENST00000534405 AP3B2Q13367 1082 aa20.53■□□□□ 0.88
SMPD1-210ENST00000534405 MOXD1Q6UVY6 613 aa20.53■□□□□ 0.88
SMPD1-210ENST00000534405 REEP2Q9BRK0 252 aa20.53■□□□□ 0.88
SMPD1-210ENST00000534405 SLITRK6Q9H5Y7 841 aa20.53■□□□□ 0.88
SMPD1-210ENST00000534405 FGFR1OP2Q9NVK5 253 aa20.53■□□□□ 0.88
SMPD1-210ENST00000534405 PI4KBQ9UBF8 816 aa20.53■□□□□ 0.88
SMPD1-210ENST00000534405 ATP8A1Q9Y2Q0 1164 aa20.53■□□□□ 0.88
SMPD1-210ENST00000534405 ATAD5Q96QE3 1844 aa20.52■□□□□ 0.88
SMPD1-210ENST00000534405 MAGEA13PA6NCF6 341 aa20.52■□□□□ 0.88
SMPD1-210ENST00000534405 RGS16O15492 202 aaPredicted RBP20.52■□□□□ 0.88
SMPD1-210ENST00000534405 CCDC166P0CW27 439 aa20.52■□□□□ 0.88
SMPD1-210ENST00000534405 IFI35P80217 286 aaPredicted RBP20.52■□□□□ 0.88
SMPD1-210ENST00000534405 TMEM62Q0P6H9 643 aa20.52■□□□□ 0.88
SMPD1-210ENST00000534405 SLC18A3Q16572 532 aa20.52■□□□□ 0.88
SMPD1-210ENST00000534405 CNPY1Q3B7I2 92 aa20.52■□□□□ 0.88
SMPD1-210ENST00000534405 EDRF1Q3B7T1 1238 aa20.52■□□□□ 0.88
SMPD1-210ENST00000534405 SFR1Q86XK3 245 aa20.52■□□□□ 0.88
SMPD1-210ENST00000534405 FAM13CQ8NE31 585 aa20.52■□□□□ 0.88
SMPD1-210ENST00000534405 CYP2W1Q8TAV3 490 aa20.52■□□□□ 0.88
SMPD1-210ENST00000534405 CCDC97Q96F63 343 aaPredicted RBP20.52■□□□□ 0.88
SMPD1-210ENST00000534405 TMEM237Q96Q45 408 aa20.52■□□□□ 0.88
SMPD1-210ENST00000534405 HAPLN3Q96S86 360 aa20.52■□□□□ 0.88
SMPD1-210ENST00000534405 AZI2Q9H6S1 392 aa20.52■□□□□ 0.88
SMPD1-210ENST00000534405 NMRK1Q9NWW6 199 aa20.52■□□□□ 0.88
SMPD1-210ENST00000534405 CIDEBQ9UHD4 219 aa20.52■□□□□ 0.88
SMPD1-210ENST00000534405 ADAMTS1Q9UHI8 967 aa20.52■□□□□ 0.88
SMPD1-210ENST00000534405 SCN9AQ15858 1988 aa20.52■□□□□ 0.88
SMPD1-210ENST00000534405 RBM47A0AV96 593 aaKnown RBP20.52■□□□□ 0.87
SMPD1-210ENST00000534405 RSPH10B2B2RC85 870 aa20.52■□□□□ 0.87
SMPD1-210ENST00000534405 RSPH10BP0C881 870 aa20.52■□□□□ 0.87
SMPD1-210ENST00000534405 KCNA3P22001 575 aa20.52■□□□□ 0.87
SMPD1-210ENST00000534405 MCL1Q07820 350 aa20.52■□□□□ 0.87
SMPD1-210ENST00000534405 RASA3Q14644 834 aa20.52■□□□□ 0.87
SMPD1-210ENST00000534405 RNF43Q68DV7 783 aa20.52■□□□□ 0.87
SMPD1-210ENST00000534405 TATDN1Q6P1N9 297 aa20.52■□□□□ 0.87
SMPD1-210ENST00000534405 GATA6Q92908 595 aa20.52■□□□□ 0.87
SMPD1-210ENST00000534405 DDX23Q9BUQ8 820 aaKnown RBP20.52■□□□□ 0.87
SMPD1-210ENST00000534405 AMNQ9BXJ7 453 aa20.52■□□□□ 0.87
SMPD1-210ENST00000534405 AIPL1Q9NZN9 384 aa20.52■□□□□ 0.87
SMPD1-210ENST00000534405 KCNK3O14649 394 aa20.51■□□□□ 0.87
SMPD1-210ENST00000534405 CETN3O15182 167 aa20.51■□□□□ 0.87
SMPD1-210ENST00000534405 ATP5HO75947 161 aa20.51■□□□□ 0.87
SMPD1-210ENST00000534405 NDUFB10O96000 172 aa20.51■□□□□ 0.87
SMPD1-210ENST00000534405 AFPP02771 609 aaKnown RBP20.51■□□□□ 0.87
SMPD1-210ENST00000534405 SLC9A1P19634 815 aa20.51■□□□□ 0.87
SMPD1-210ENST00000534405 RPA1P27694 616 aa20.51■□□□□ 0.87
SMPD1-210ENST00000534405 CROCCP2Q86T23 111 aa20.51■□□□□ 0.87
SMPD1-210ENST00000534405 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP20.51■□□□□ 0.87
SMPD1-210ENST00000534405 LUC7LQ9NQ29 371 aaKnown RBP20.51■□□□□ 0.87
SMPD1-210ENST00000534405 HDAC9Q9UKV0 1011 aa20.51■□□□□ 0.87
SMPD1-210ENST00000534405 RPL26L1Q9UNX3 145 aaKnown RBP20.51■□□□□ 0.87
SMPD1-210ENST00000534405 SMCHD1A6NHR9 2005 aa20.51■□□□□ 0.87
SMPD1-210ENST00000534405 TJP3O95049 919 aa20.51■□□□□ 0.87
SMPD1-210ENST00000534405 LMNAP02545 664 aaKnown RBP20.51■□□□□ 0.87
SMPD1-210ENST00000534405 SKIP12755 728 aa20.51■□□□□ 0.87
SMPD1-210ENST00000534405 HOXA13P31271 388 aaPredicted RBP20.51■□□□□ 0.87
SMPD1-210ENST00000534405 CYP4A11Q02928 519 aa20.51■□□□□ 0.87
SMPD1-210ENST00000534405 KLHL30Q0D2K2 578 aa20.51■□□□□ 0.87
SMPD1-210ENST00000534405 LSAMPQ13449 338 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms