RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 UHRF1Q96T88 793 aaPredicted RBP5.04□□□□□ -1.6
CD44-233ENST00000531141 CDH19Q9H159 772 aa5.04□□□□□ -1.6
CD44-233ENST00000531141 MANSC1Q9H8J5 431 aa5.04□□□□□ -1.6
CD44-233ENST00000531141 METTL14Q9HCE5 456 aaKnown RBP5.04□□□□□ -1.6
CD44-233ENST00000531141 THRAP3Q9Y2W1 955 aaKnown RBP5.04□□□□□ -1.6
CD44-233ENST00000531141 TCAF1Q9Y4C2 921 aa5.04□□□□□ -1.6
CD44-233ENST00000531141 ADCY6O43306 1168 aa5.03□□□□□ -1.6
CD44-233ENST00000531141 AKAP10O43572 662 aa5.03□□□□□ -1.6
CD44-233ENST00000531141 ZNF623O75123 536 aa5.03□□□□□ -1.6
CD44-233ENST00000531141 CT47B1P0C2W7 299 aaPredicted RBP5.03□□□□□ -1.6
CD44-233ENST00000531141 GSPT1P15170 499 aaKnown RBP5.03□□□□□ -1.6
CD44-233ENST00000531141 ADSLP30566 484 aaPredicted RBP5.03□□□□□ -1.6
CD44-233ENST00000531141 FLT3LGP49771 235 aa5.03□□□□□ -1.6
CD44-233ENST00000531141 HHEXQ03014 270 aa5.03□□□□□ -1.6
CD44-233ENST00000531141 FOXL1Q12952 345 aa5.03□□□□□ -1.6
CD44-233ENST00000531141 MRPL49Q13405 166 aaKnown RBP5.03□□□□□ -1.6
CD44-233ENST00000531141 UAP1L1Q3KQV9 507 aa5.03□□□□□ -1.6
CD44-233ENST00000531141 PRAMEF14Q5SWL7 426 aa5.03□□□□□ -1.6
CD44-233ENST00000531141 Q6ZVL8 140 aa5.03□□□□□ -1.6
CD44-233ENST00000531141 ZNF572Q7Z3I7 529 aaPredicted RBP5.03□□□□□ -1.6
CD44-233ENST00000531141 APBB1IPQ7Z5R6 666 aaPredicted RBP5.03□□□□□ -1.6
CD44-233ENST00000531141 ANKRD35Q8N283 1001 aa5.03□□□□□ -1.6
CD44-233ENST00000531141 PQLC1Q8N2U9 271 aa5.03□□□□□ -1.6
CD44-233ENST00000531141 MIER2Q8N344 545 aa5.03□□□□□ -1.6
CD44-233ENST00000531141 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.03□□□□□ -1.6
CD44-233ENST00000531141 Q8TCH9 128 aa5.03□□□□□ -1.6
CD44-233ENST00000531141 HSPBAP1Q96EW2 488 aa5.03□□□□□ -1.6
CD44-233ENST00000531141 ZNF512Q96ME7 567 aaPredicted RBP5.03□□□□□ -1.6
CD44-233ENST00000531141 C7orf25Q9BPX7 421 aa5.03□□□□□ -1.6
CD44-233ENST00000531141 CD248Q9HCU0 757 aa5.03□□□□□ -1.6
CD44-233ENST00000531141 SMPD4Q9NXE4 827 aa5.03□□□□□ -1.6
CD44-233ENST00000531141 JAG2Q9Y219 1238 aa5.03□□□□□ -1.6
CD44-233ENST00000531141 B5MCH6 92 aa5.02□□□□□ -1.61
CD44-233ENST00000531141 CYP27B1O15528 508 aa5.02□□□□□ -1.61
CD44-233ENST00000531141 SGTAO43765 313 aa5.02□□□□□ -1.61
CD44-233ENST00000531141 IL33O95760 270 aa5.02□□□□□ -1.61
CD44-233ENST00000531141 GNAT2P19087 354 aa5.02□□□□□ -1.61
CD44-233ENST00000531141 GUCY1A2P33402 732 aa5.02□□□□□ -1.61
CD44-233ENST00000531141 SREBF1P36956 1147 aa5.02□□□□□ -1.61
CD44-233ENST00000531141 RAB27AP51159 221 aa5.02□□□□□ -1.61
CD44-233ENST00000531141 PER3P56645 1201 aa5.02□□□□□ -1.61
CD44-233ENST00000531141 EFEMP1Q12805 493 aa5.02□□□□□ -1.61
CD44-233ENST00000531141 SP140Q13342 867 aa5.02□□□□□ -1.61
CD44-233ENST00000531141 SEPT2Q15019 361 aa5.02□□□□□ -1.61
CD44-233ENST00000531141 FAM214AQ32MH5 1076 aa5.02□□□□□ -1.61
CD44-233ENST00000531141 DOK3Q7L591 496 aa5.02□□□□□ -1.61
CD44-233ENST00000531141 CHST13Q8NET6 341 aa5.02□□□□□ -1.61
CD44-233ENST00000531141 MDM1Q8TC05 714 aa5.02□□□□□ -1.61
CD44-233ENST00000531141 CASKIN2Q8WXE0 1202 aa5.02□□□□□ -1.61
CD44-233ENST00000531141 COA7Q96BR5 231 aa5.02□□□□□ -1.61
CD44-233ENST00000531141 CYFIP2Q96F07 1278 aa5.02□□□□□ -1.61
CD44-233ENST00000531141 PDCD2LQ9BRP1 358 aa5.02□□□□□ -1.61
CD44-233ENST00000531141 RTFDC1Q9BY42 306 aaPredicted RBP5.02□□□□□ -1.61
CD44-233ENST00000531141 RHOBTB2Q9BYZ6 727 aa5.02□□□□□ -1.61
CD44-233ENST00000531141 SENP6Q9GZR1 1112 aaPredicted RBP5.02□□□□□ -1.61
CD44-233ENST00000531141 EPC1Q9H2F5 836 aa5.02□□□□□ -1.61
CD44-233ENST00000531141 MOCS1Q9NZB8 636 aa5.02□□□□□ -1.61
CD44-233ENST00000531141 ZIM2Q9NZV7 527 aa5.02□□□□□ -1.61
CD44-233ENST00000531141 KLHL42Q9P2K6 505 aa5.02□□□□□ -1.61
CD44-233ENST00000531141 IP6K2Q9UHH9 426 aa5.02□□□□□ -1.61
CD44-233ENST00000531141 SERPINB13Q9UIV8 391 aa5.02□□□□□ -1.61
CD44-233ENST00000531141 INTUQ9ULD6 942 aa5.02□□□□□ -1.61
CD44-233ENST00000531141 PNMA8BQ9ULN7 279 aaPredicted RBP5.02□□□□□ -1.61
CD44-233ENST00000531141 SH3BP1Q9Y3L3 701 aa5.02□□□□□ -1.61
CD44-233ENST00000531141 IPPQ9Y573 584 aa5.02□□□□□ -1.61
CD44-233ENST00000531141 CCDC154A6NI56 674 aa5.01□□□□□ -1.61
CD44-233ENST00000531141 CAPN14A8MX76 684 aa5.01□□□□□ -1.61
CD44-233ENST00000531141 TEX33O43247 280 aa5.01□□□□□ -1.61
CD44-233ENST00000531141 HTRA2O43464 458 aaPredicted RBP5.01□□□□□ -1.61
CD44-233ENST00000531141 GPR32O75388 356 aa5.01□□□□□ -1.61
CD44-233ENST00000531141 STC2O76061 302 aa5.01□□□□□ -1.61
CD44-233ENST00000531141 PF4V1P10720 104 aa5.01□□□□□ -1.61
CD44-233ENST00000531141 SLC6A9P48067 706 aa5.01□□□□□ -1.61
CD44-233ENST00000531141 APBA1Q02410 837 aa5.01□□□□□ -1.61
CD44-233ENST00000531141 ELAVL1Q15717 326 aaKnown RBP5.01□□□□□ -1.61
CD44-233ENST00000531141 SPATS1Q496A3 300 aa5.01□□□□□ -1.61
CD44-233ENST00000531141 DCAF17Q5H9S7 520 aaPredicted RBP5.01□□□□□ -1.61
CD44-233ENST00000531141 PPP4R3AQ6IN85 833 aa5.01□□□□□ -1.61
CD44-233ENST00000531141 MAMDC4Q6UXC1 1216 aa5.01□□□□□ -1.61
CD44-233ENST00000531141 ZNF808Q8N4W9 903 aaPredicted RBP5.01□□□□□ -1.61
CD44-233ENST00000531141 MDGA1Q8NFP4 955 aa5.01□□□□□ -1.61
CD44-233ENST00000531141 OR2I1PQ8NGU4 316 aa5.01□□□□□ -1.61
CD44-233ENST00000531141 EDAQ92838 391 aa5.01□□□□□ -1.61
CD44-233ENST00000531141 MIEF2Q96C03 454 aa5.01□□□□□ -1.61
CD44-233ENST00000531141 C8orf49Q96NF6 230 aa5.01□□□□□ -1.61
CD44-233ENST00000531141 DEF6Q9H4E7 631 aa5.01□□□□□ -1.61
CD44-233ENST00000531141 TMEM140Q9NV12 185 aa5.01□□□□□ -1.61
CD44-233ENST00000531141 TCEAL9Q9UHQ7 104 aa5.01□□□□□ -1.61
CD44-233ENST00000531141 ST6GALNAC2Q9UJ37 374 aa5.01□□□□□ -1.61
CD44-233ENST00000531141 ZNF180Q9UJW8 692 aa5.01□□□□□ -1.61
CD44-233ENST00000531141 ANKRD6Q9Y2G4 727 aa5.01□□□□□ -1.61
CD44-233ENST00000531141 SIK3Q9Y2K2 1263 aa5.01□□□□□ -1.61
CD44-233ENST00000531141 CFAP20Q9Y6A4 193 aaKnown RBP5.01□□□□□ -1.61
CD44-233ENST00000531141 EID1Q9Y6B2 187 aa5.01□□□□□ -1.61
CD44-233ENST00000531141 MUSKO15146 869 aa5□□□□□ -1.61
CD44-233ENST00000531141 PJA2O43164 708 aa5□□□□□ -1.61
CD44-233ENST00000531141 HOXA3O43365 443 aaPredicted RBP5□□□□□ -1.61
CD44-233ENST00000531141 RFPL1O75677 317 aa5□□□□□ -1.61
CD44-233ENST00000531141 SCGB1D2O95969 90 aa5□□□□□ -1.61
CD44-233ENST00000531141 RPLP2P05387 115 aaKnown RBP5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms