RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 TEKT5Q96M29 485 aa6.31□□□□□ -1.4
CD44-230ENST00000528922 PUS7Q96PZ0 661 aaKnown RBP6.31□□□□□ -1.4
CD44-230ENST00000528922 DMRT3Q9NQL9 472 aa6.31□□□□□ -1.4
CD44-230ENST00000528922 TUBD1Q9UJT1 453 aa6.31□□□□□ -1.4
CD44-230ENST00000528922 THRAP3Q9Y2W1 955 aaKnown RBP6.31□□□□□ -1.4
CD44-230ENST00000528922 EPRSP07814 1512 aaKnown RBP6.31□□□□□ -1.4
CD44-230ENST00000528922 JUNP05412 331 aaKnown RBP6.3□□□□□ -1.4
CD44-230ENST00000528922 C5AR1P21730 350 aa6.3□□□□□ -1.4
CD44-230ENST00000528922 CCND1P24385 295 aa6.3□□□□□ -1.4
CD44-230ENST00000528922 MCL1Q07820 350 aa6.3□□□□□ -1.4
CD44-230ENST00000528922 MALLQ13021 153 aa6.3□□□□□ -1.4
CD44-230ENST00000528922 RIN1Q13671 783 aa6.3□□□□□ -1.4
CD44-230ENST00000528922 NFIXQ14938 502 aa6.3□□□□□ -1.4
CD44-230ENST00000528922 GAGE13Q4V321 117 aa6.3□□□□□ -1.4
CD44-230ENST00000528922 C19orf54Q5BKX5 351 aa6.3□□□□□ -1.4
CD44-230ENST00000528922 ZBTB46Q86UZ6 589 aa6.3□□□□□ -1.4
CD44-230ENST00000528922 RAVER1Q8IY67 606 aaKnown RBP6.3□□□□□ -1.4
CD44-230ENST00000528922 SHCBP1Q8NEM2 672 aa6.3□□□□□ -1.4
CD44-230ENST00000528922 SNX33Q8WV41 574 aa6.3□□□□□ -1.4
CD44-230ENST00000528922 RIN2Q8WYP3 895 aaPredicted RBP6.3□□□□□ -1.4
CD44-230ENST00000528922 PLA2G12BQ9BX93 195 aa6.3□□□□□ -1.4
CD44-230ENST00000528922 GREM2Q9H772 168 aa6.3□□□□□ -1.4
CD44-230ENST00000528922 RAPGEFL1Q9UHV5 662 aa6.3□□□□□ -1.4
CD44-230ENST00000528922 MRFAP1Q9Y605 127 aa6.3□□□□□ -1.4
CD44-230ENST00000528922 CNTLNQ9NXG0 1405 aa6.3□□□□□ -1.4
CD44-230ENST00000528922 DNMT1P26358 1616 aaKnown RBP6.3□□□□□ -1.4
CD44-230ENST00000528922 IQSEC2Q5JU85 1478 aa6.3□□□□□ -1.4
CD44-230ENST00000528922 LRRIQ1Q96JM4 1722 aa6.29□□□□□ -1.4
CD44-230ENST00000528922 GLI2P10070 1586 aa6.29□□□□□ -1.4
CD44-230ENST00000528922 ADAMTS12P58397 1594 aa6.29□□□□□ -1.4
CD44-230ENST00000528922 PRG4Q92954 1404 aaPredicted RBP6.29□□□□□ -1.4
CD44-230ENST00000528922 MTSS1O43312 755 aa6.29□□□□□ -1.4
CD44-230ENST00000528922 PRAMEF4O60810 478 aa6.29□□□□□ -1.4
CD44-230ENST00000528922 NDUFS2O75306 463 aa6.29□□□□□ -1.4
CD44-230ENST00000528922 ITGB3P05106 788 aa6.29□□□□□ -1.4
CD44-230ENST00000528922 GSPT1P15170 499 aaKnown RBP6.29□□□□□ -1.4
CD44-230ENST00000528922 MCAMP43121 646 aa6.29□□□□□ -1.4
CD44-230ENST00000528922 MEF2AQ02078 507 aaPredicted RBP6.29□□□□□ -1.4
CD44-230ENST00000528922 MUM1L1Q5H9M0 696 aa6.29□□□□□ -1.4
CD44-230ENST00000528922 KRT40Q6A162 431 aa6.29□□□□□ -1.4
CD44-230ENST00000528922 TCTN3Q6NUS6 607 aa6.29□□□□□ -1.4
CD44-230ENST00000528922 GPR156Q8NFN8 814 aa6.29□□□□□ -1.4
CD44-230ENST00000528922 SSH1Q8WYL5 1049 aa6.29□□□□□ -1.4
CD44-230ENST00000528922 HOOK2Q96ED9 719 aa6.29□□□□□ -1.4
CD44-230ENST00000528922 TLR9Q9NR96 1032 aa6.29□□□□□ -1.4
CD44-230ENST00000528922 ADGBQ8N7X0 1667 aa6.29□□□□□ -1.4
CD44-230ENST00000528922 KIAA0586Q9BVV6 1533 aa6.29□□□□□ -1.4
CD44-230ENST00000528922 RPRD2Q5VT52 1461 aaKnown RBP6.29□□□□□ -1.4
CD44-230ENST00000528922 RPTORQ8N122 1335 aa6.29□□□□□ -1.4
CD44-230ENST00000528922 FANCIQ9NVI1 1328 aa6.29□□□□□ -1.4
CD44-230ENST00000528922 UBE2QL1A1L167 161 aa6.28□□□□□ -1.4
CD44-230ENST00000528922 FOXS1O43638 330 aa6.28□□□□□ -1.4
CD44-230ENST00000528922 ADSLP30566 484 aaPredicted RBP6.28□□□□□ -1.4
CD44-230ENST00000528922 CTSWP56202 376 aa6.28□□□□□ -1.4
CD44-230ENST00000528922 ODR4Q5SWX8 454 aa6.28□□□□□ -1.4
CD44-230ENST00000528922 EFCAB2Q5VUJ9 269 aa6.28□□□□□ -1.4
CD44-230ENST00000528922 GLB1LQ6UWU2 654 aa6.28□□□□□ -1.4
CD44-230ENST00000528922 Q6ZVL8 140 aa6.28□□□□□ -1.4
CD44-230ENST00000528922 LILRA3Q8N6C8 439 aaPredicted RBP6.28□□□□□ -1.4
CD44-230ENST00000528922 PAWRQ96IZ0 340 aaKnown RBP6.28□□□□□ -1.4
CD44-230ENST00000528922 MPHOSPH9Q99550 1183 aa6.28□□□□□ -1.4
CD44-230ENST00000528922 BDH2Q9BUT1 245 aa6.28□□□□□ -1.4
CD44-230ENST00000528922 AASDHPPTQ9NRN7 309 aa6.28□□□□□ -1.4
CD44-230ENST00000528922 LTBP4Q8N2S1 1624 aa6.28□□□□□ -1.4
CD44-230ENST00000528922 BCORL1Q5H9F3 1711 aa6.28□□□□□ -1.4
CD44-230ENST00000528922 GRIN2AQ12879 1464 aa6.28□□□□□ -1.4
CD44-230ENST00000528922 ZBED9Q6R2W3 1325 aa6.28□□□□□ -1.4
CD44-230ENST00000528922 ARID1BQ8NFD5 2236 aaPredicted RBP6.28□□□□□ -1.4
CD44-230ENST00000528922 MAP3K4Q9Y6R4 1608 aa6.27□□□□□ -1.41
CD44-230ENST00000528922 AKR1B10O60218 316 aa6.27□□□□□ -1.41
CD44-230ENST00000528922 ZRANB2O95218 330 aaKnown RBP eCLIP6.27□□□□□ -1.41
CD44-230ENST00000528922 CASRP41180 1078 aa6.27□□□□□ -1.41
CD44-230ENST00000528922 RECQLP46063 649 aaPredicted RBP6.27□□□□□ -1.41
CD44-230ENST00000528922 RAB27AP51159 221 aa6.27□□□□□ -1.41
CD44-230ENST00000528922 WNT3AP56704 352 aa6.27□□□□□ -1.41
CD44-230ENST00000528922 CIR1Q86X95 450 aaPredicted RBP6.27□□□□□ -1.41
CD44-230ENST00000528922 CMTM4Q8IZR5 234 aa6.27□□□□□ -1.41
CD44-230ENST00000528922 GIMAP8Q8ND71 665 aaPredicted RBP6.27□□□□□ -1.41
CD44-230ENST00000528922 OR2I1PQ8NGU4 316 aa6.27□□□□□ -1.41
CD44-230ENST00000528922 CXorf38Q8TB03 319 aa6.27□□□□□ -1.41
CD44-230ENST00000528922 ENKD1Q9H0I2 346 aa6.27□□□□□ -1.41
CD44-230ENST00000528922 IL23AQ9NPF7 189 aa6.27□□□□□ -1.41
CD44-230ENST00000528922 RBM12Q9NTZ6 932 aaKnown RBP6.27□□□□□ -1.41
CD44-230ENST00000528922 NCDNQ9UBB6 729 aa6.27□□□□□ -1.41
CD44-230ENST00000528922 DNM3Q9UQ16 869 aa6.27□□□□□ -1.41
CD44-230ENST00000528922 LUC7L2Q9Y383 392 aaKnown RBP6.27□□□□□ -1.41
CD44-230ENST00000528922 SETD1AO15047 1707 aaKnown RBP6.27□□□□□ -1.41
CD44-230ENST00000528922 RAPGEF6Q8TEU7 1601 aa6.27□□□□□ -1.41
CD44-230ENST00000528922 A0A1W2PRX2 142 aa6.26□□□□□ -1.41
CD44-230ENST00000528922 AKAP10O43572 662 aa6.26□□□□□ -1.41
CD44-230ENST00000528922 SNUPNO95149 360 aaKnown RBP6.26□□□□□ -1.41
CD44-230ENST00000528922 SEPT2Q15019 361 aa6.26□□□□□ -1.41
CD44-230ENST00000528922 NOMO1Q15155 1222 aa6.26□□□□□ -1.41
CD44-230ENST00000528922 MST1LQ2TV78 715 aa6.26□□□□□ -1.41
CD44-230ENST00000528922 CMTR2Q8IYT2 770 aaKnown RBP6.26□□□□□ -1.41
CD44-230ENST00000528922 FUKQ8N0W3 1084 aa6.26□□□□□ -1.41
CD44-230ENST00000528922 CPA6Q8N4T0 437 aa6.26□□□□□ -1.41
CD44-230ENST00000528922 DNERQ8NFT8 737 aa6.26□□□□□ -1.41
CD44-230ENST00000528922 NRG4Q8WWG1 115 aa6.26□□□□□ -1.41
CD44-230ENST00000528922 DPF2Q92785 391 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms