RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 SCNN1GP51170 649 aa6.34□□□□□ -1.39
CD44-223ENST00000526553 EVA1CP58658 441 aa6.34□□□□□ -1.39
CD44-223ENST00000526553 MGAT2Q10469 447 aa6.34□□□□□ -1.39
CD44-223ENST00000526553 NRN1LQ496H8 165 aa6.34□□□□□ -1.39
CD44-223ENST00000526553 PGM2L1Q6PCE3 622 aa6.34□□□□□ -1.39
CD44-223ENST00000526553 C1orf210Q8IVY1 113 aa6.34□□□□□ -1.39
CD44-223ENST00000526553 MB21D1Q8N884 522 aa6.34□□□□□ -1.39
CD44-223ENST00000526553 LSM14BQ9BX40 385 aaKnown RBP6.34□□□□□ -1.39
CD44-223ENST00000526553 GPR87Q9BY21 358 aa6.34□□□□□ -1.39
CD44-223ENST00000526553 DMRT3Q9NQL9 472 aa6.34□□□□□ -1.39
CD44-223ENST00000526553 MKS1Q9NXB0 559 aa6.34□□□□□ -1.39
CD44-223ENST00000526553 SHTN1A0MZ66 631 aa6.33□□□□□ -1.4
CD44-223ENST00000526553 B5MCH6 92 aa6.33□□□□□ -1.4
CD44-223ENST00000526553 PLSCR1O15162 318 aa6.33□□□□□ -1.4
CD44-223ENST00000526553 MT-CO1P00395 513 aa6.33□□□□□ -1.4
CD44-223ENST00000526553 MYBL2P10244 700 aa6.33□□□□□ -1.4
CD44-223ENST00000526553 ADSLP30566 484 aaPredicted RBP6.33□□□□□ -1.4
CD44-223ENST00000526553 FLT3LGP49771 235 aa6.33□□□□□ -1.4
CD44-223ENST00000526553 CNGB1Q14028 1251 aaPredicted RBP6.33□□□□□ -1.4
CD44-223ENST00000526553 CLUL1Q15846 466 aa6.33□□□□□ -1.4
CD44-223ENST00000526553 ABCB5Q2M3G0 1257 aa6.33□□□□□ -1.4
CD44-223ENST00000526553 MIIPQ5JXC2 388 aa6.33□□□□□ -1.4
CD44-223ENST00000526553 PRAMEF14Q5SWL7 426 aa6.33□□□□□ -1.4
CD44-223ENST00000526553 Q6ZVL8 140 aa6.33□□□□□ -1.4
CD44-223ENST00000526553 GPRIN1Q7Z2K8 1008 aa6.33□□□□□ -1.4
CD44-223ENST00000526553 TRMT2AQ8IZ69 625 aaKnown RBP6.33□□□□□ -1.4
CD44-223ENST00000526553 OR52N2Q8NGI0 321 aa6.33□□□□□ -1.4
CD44-223ENST00000526553 MDM1Q8TC05 714 aa6.33□□□□□ -1.4
CD44-223ENST00000526553 FAXDC2Q96IV6 333 aa6.33□□□□□ -1.4
CD44-223ENST00000526553 MNTQ99583 582 aa6.33□□□□□ -1.4
CD44-223ENST00000526553 CPPED1Q9BRF8 314 aaPredicted RBP6.33□□□□□ -1.4
CD44-223ENST00000526553 CCDC8Q9H0W5 538 aaPredicted RBP6.33□□□□□ -1.4
CD44-223ENST00000526553 HOMER2Q9NSB8 354 aa6.33□□□□□ -1.4
CD44-223ENST00000526553 CLCA2Q9UQC9 943 aa6.33□□□□□ -1.4
CD44-223ENST00000526553 PCDHGA2Q9Y5H1 932 aa6.33□□□□□ -1.4
CD44-223ENST00000526553 FAM171A2A8MVW0 826 aa6.32□□□□□ -1.4
CD44-223ENST00000526553 FZD9O00144 591 aa6.32□□□□□ -1.4
CD44-223ENST00000526553 ADCY6O43306 1168 aa6.32□□□□□ -1.4
CD44-223ENST00000526553 ENDOD1O94919 500 aa6.32□□□□□ -1.4
CD44-223ENST00000526553 HSP90B1P14625 803 aaKnown RBP6.32□□□□□ -1.4
CD44-223ENST00000526553 FOXE3Q13461 319 aa6.32□□□□□ -1.4
CD44-223ENST00000526553 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.32□□□□□ -1.4
CD44-223ENST00000526553 ZNF503Q96F45 646 aa6.32□□□□□ -1.4
CD44-223ENST00000526553 FUBP3Q96I24 572 aaKnown RBP eCLIP6.32□□□□□ -1.4
CD44-223ENST00000526553 CPEB1Q9BZB8 566 aaKnown RBP6.32□□□□□ -1.4
CD44-223ENST00000526553 ASPSCR1Q9BZE9 553 aa6.32□□□□□ -1.4
CD44-223ENST00000526553 SLC13A1Q9BZW2 595 aa6.32□□□□□ -1.4
CD44-223ENST00000526553 VPS11Q9H270 941 aa6.32□□□□□ -1.4
CD44-223ENST00000526553 CEP72Q9P209 647 aa6.32□□□□□ -1.4
CD44-223ENST00000526553 HDAC5Q9UQL6 1122 aa6.32□□□□□ -1.4
CD44-223ENST00000526553 SPEF1Q9Y4P9 236 aa6.32□□□□□ -1.4
CD44-223ENST00000526553 ZMYM3Q14202 1370 aa6.31□□□□□ -1.4
CD44-223ENST00000526553 XDHP47989 1333 aa6.31□□□□□ -1.4
CD44-223ENST00000526553 KLHL33A6NCF5 533 aa6.31□□□□□ -1.4
CD44-223ENST00000526553 SREBF1P36956 1147 aa6.31□□□□□ -1.4
CD44-223ENST00000526553 WASP42768 502 aa6.31□□□□□ -1.4
CD44-223ENST00000526553 VPS72Q15906 364 aa6.31□□□□□ -1.4
CD44-223ENST00000526553 CRIP3Q6Q6R5 217 aa6.31□□□□□ -1.4
CD44-223ENST00000526553 ZNF572Q7Z3I7 529 aaPredicted RBP6.31□□□□□ -1.4
CD44-223ENST00000526553 RPUSD2Q8IZ73 545 aaKnown RBP6.31□□□□□ -1.4
CD44-223ENST00000526553 CACTINQ8WUQ7 758 aaKnown RBP6.31□□□□□ -1.4
CD44-223ENST00000526553 JADE3Q92613 823 aa6.31□□□□□ -1.4
CD44-223ENST00000526553 CEP95Q96GE4 821 aa6.31□□□□□ -1.4
CD44-223ENST00000526553 SLC2A13Q96QE2 648 aa6.31□□□□□ -1.4
CD44-223ENST00000526553 ZNF747Q9BV97 191 aa6.31□□□□□ -1.4
CD44-223ENST00000526553 LANCL2Q9NS86 450 aa6.31□□□□□ -1.4
CD44-223ENST00000526553 PARPBPQ9NWS1 579 aa6.31□□□□□ -1.4
CD44-223ENST00000526553 MRFAP1Q9Y605 127 aa6.31□□□□□ -1.4
CD44-223ENST00000526553 PRR5-ARHGAP8B1AHC4 643 aa6.3□□□□□ -1.4
CD44-223ENST00000526553 PJA2O43164 708 aa6.3□□□□□ -1.4
CD44-223ENST00000526553 PCDHGA12O60330 932 aa6.3□□□□□ -1.4
CD44-223ENST00000526553 GSPT1P15170 499 aaKnown RBP6.3□□□□□ -1.4
CD44-223ENST00000526553 NCLP19338 710 aaKnown RBP6.3□□□□□ -1.4
CD44-223ENST00000526553 HK1P19367 917 aa6.3□□□□□ -1.4
CD44-223ENST00000526553 PTH1RQ03431 593 aa6.3□□□□□ -1.4
CD44-223ENST00000526553 SP140Q13342 867 aa6.3□□□□□ -1.4
CD44-223ENST00000526553 TOB2Q14106 344 aaPredicted RBP6.3□□□□□ -1.4
CD44-223ENST00000526553 SEPT2Q15019 361 aa6.3□□□□□ -1.4
CD44-223ENST00000526553 NOMO1Q15155 1222 aa6.3□□□□□ -1.4
CD44-223ENST00000526553 FAM47AQ5JRC9 791 aa6.3□□□□□ -1.4
CD44-223ENST00000526553 MFSD14BQ5SR56 506 aa6.3□□□□□ -1.4
CD44-223ENST00000526553 DRICH1Q6PGQ1 229 aaPredicted RBP6.3□□□□□ -1.4
CD44-223ENST00000526553 PQLC1Q8N2U9 271 aa6.3□□□□□ -1.4
CD44-223ENST00000526553 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.3□□□□□ -1.4
CD44-223ENST00000526553 UHRF1Q96T88 793 aaPredicted RBP6.3□□□□□ -1.4
CD44-223ENST00000526553 TUBD1Q9UJT1 453 aa6.3□□□□□ -1.4
CD44-223ENST00000526553 DNM3Q9UQ16 869 aa6.3□□□□□ -1.4
CD44-223ENST00000526553 PCDHGA9Q9Y5G4 932 aaKnown RBP6.3□□□□□ -1.4
CD44-223ENST00000526553 PCDHGA8Q9Y5G5 932 aa6.3□□□□□ -1.4
CD44-223ENST00000526553 PCDHGA7Q9Y5G6 932 aa6.3□□□□□ -1.4
CD44-223ENST00000526553 PCDHGA6Q9Y5G7 932 aa6.3□□□□□ -1.4
CD44-223ENST00000526553 PCDHGA3Q9Y5H0 932 aa6.3□□□□□ -1.4
CD44-223ENST00000526553 TNKSO95271 1327 aa6.29□□□□□ -1.4
CD44-223ENST00000526553 hCG_2014768A0A024R1R8 64 aa6.29□□□□□ -1.4
CD44-223ENST00000526553 GRXCR1A8MXD5 290 aa6.29□□□□□ -1.4
CD44-223ENST00000526553 NDUFS2O75306 463 aa6.29□□□□□ -1.4
CD44-223ENST00000526553 PEX11BO96011 259 aa6.29□□□□□ -1.4
CD44-223ENST00000526553 C1SP09871 688 aa6.29□□□□□ -1.4
CD44-223ENST00000526553 TACR2P21452 398 aa6.29□□□□□ -1.4
CD44-223ENST00000526553 C5AR1P21730 350 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms