RNA–Protein interactions for RNA: ENST00000525209.5

CD44-213, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 574 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-213ENST00000525209 RIMBP3BA6NNM3 1639 aa4.97□□□□□ -1.61
CD44-213ENST00000525209 RIMBP3Q9UFD9 1639 aa4.97□□□□□ -1.61
CD44-213ENST00000525209 MRC2Q9UBG0 1479 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 A0A0B4J269 797 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 LRRC14BA6NHZ5 514 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 F8W8V4 182 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 H7C1D1 291 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 ELL2O00472 640 aaPredicted RBP4.96□□□□□ -1.62
CD44-213ENST00000525209 WNT9AO14904 365 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 HNRNPDLO14979 420 aaKnown RBP4.96□□□□□ -1.62
CD44-213ENST00000525209 SHOXO15266 292 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 FAM155BO75949 473 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 CCDC175P0C221 793 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 ITGA4P13612 1032 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 ENPP1P22413 925 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 GRK4P32298 578 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 HSPA4P34932 840 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 STAT5AP42229 794 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 MCM2P49736 904 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 CCR5P51681 352 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 UBE3AQ05086 875 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 SNAPC2Q13487 334 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 EIF4A2Q14240 407 aaKnown RBP4.96□□□□□ -1.62
CD44-213ENST00000525209 UBE3CQ15386 1083 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 FSCN1Q16658 493 aaKnown RBP4.96□□□□□ -1.62
CD44-213ENST00000525209 ATP2B3Q16720 1220 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 MUM1L1Q5H9M0 696 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 C1orf141Q5JVX7 400 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 RAB12Q6IQ22 244 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 GPAT2Q6NUI2 795 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 KDELC1Q6UW63 502 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 C2CD5Q86YS7 1000 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 RIOX2Q8IUF8 465 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 MCATQ8IVS2 390 aaKnown RBP4.96□□□□□ -1.62
CD44-213ENST00000525209 CEP97Q8IW35 865 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 IQCF2Q8IXL9 164 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 RNF168Q8IYW5 571 aaPredicted RBP4.96□□□□□ -1.62
CD44-213ENST00000525209 TBC1D21Q8IYX1 336 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 GOLGA6L2Q8N9W4 650 aaPredicted RBP4.96□□□□□ -1.62
CD44-213ENST00000525209 NEDD1Q8NHV4 660 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 BICD2Q8TD16 824 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 DDX54Q8TDD1 881 aaKnown RBP4.96□□□□□ -1.62
CD44-213ENST00000525209 ANKS1AQ92625 1134 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 ABHD17AQ96GS6 310 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 NSUN5Q96P11 429 aaKnown RBP4.96□□□□□ -1.62
CD44-213ENST00000525209 POP1Q99575 1024 aaKnown RBP4.96□□□□□ -1.62
CD44-213ENST00000525209 PTPN18Q99952 460 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 PHF20Q9BVI0 1012 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 MXD3Q9BW11 206 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP4.96□□□□□ -1.62
CD44-213ENST00000525209 PRDM13Q9H4Q3 707 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 EPS8L2Q9H6S3 715 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 ZNF287Q9HBT7 754 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 GP6Q9HCN6 339 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 FANCFQ9NPI8 374 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 USP36Q9P275 1121 aaKnown RBP4.96□□□□□ -1.62
CD44-213ENST00000525209 DKK3Q9UBP4 350 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 SRP68Q9UHB9 627 aaKnown RBP4.96□□□□□ -1.62
CD44-213ENST00000525209 FEM1BQ9UK73 627 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 PCDHGB4Q9UN71 923 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 NPFFR2Q9Y5X5 522 aa4.96□□□□□ -1.62
CD44-213ENST00000525209 LCHNA4D1U4 455 aa4.95□□□□□ -1.62
CD44-213ENST00000525209 BTBD11A6QL63 1104 aa4.95□□□□□ -1.62
CD44-213ENST00000525209 NT5C1B-RDH14C9J2C7 533 aa4.95□□□□□ -1.62
CD44-213ENST00000525209 UBE2CO00762 179 aa4.95□□□□□ -1.62
CD44-213ENST00000525209 CAPN9O14815 690 aa4.95□□□□□ -1.62
CD44-213ENST00000525209 MUSKO15146 869 aa4.95□□□□□ -1.62
CD44-213ENST00000525209 SGSM2O43147 1006 aa4.95□□□□□ -1.62
CD44-213ENST00000525209 ERAL1O75616 437 aaKnown RBP4.95□□□□□ -1.62
CD44-213ENST00000525209 BBOX1O75936 387 aa4.95□□□□□ -1.62
CD44-213ENST00000525209 USP1O94782 785 aa4.95□□□□□ -1.62
CD44-213ENST00000525209 PGM3O95394 542 aa4.95□□□□□ -1.62
CD44-213ENST00000525209 MLYCDO95822 493 aa4.95□□□□□ -1.62
CD44-213ENST00000525209 SCGB1D1O95968 90 aa4.95□□□□□ -1.62
CD44-213ENST00000525209 QDPRP09417 244 aa4.95□□□□□ -1.62
CD44-213ENST00000525209 ESRRAP11474 423 aaPredicted RBP4.95□□□□□ -1.62
CD44-213ENST00000525209 SLC9A1P19634 815 aa4.95□□□□□ -1.62
CD44-213ENST00000525209 MAPK4P31152 587 aa4.95□□□□□ -1.62
CD44-213ENST00000525209 GBP1P32455 592 aa4.95□□□□□ -1.62
CD44-213ENST00000525209 DNM2P50570 870 aa4.95□□□□□ -1.62
CD44-213ENST00000525209 USP11P51784 963 aa4.95□□□□□ -1.62
CD44-213ENST00000525209 SLC16A1P53985 500 aa4.95□□□□□ -1.62
CD44-213ENST00000525209 SH3BGRP55822 239 aaPredicted RBP4.95□□□□□ -1.62
CD44-213ENST00000525209 NLRP12P59046 1061 aa4.95□□□□□ -1.62
CD44-213ENST00000525209 NLRP5P59047 1200 aa4.95□□□□□ -1.62
CD44-213ENST00000525209 POLR2FP61218 127 aaKnown RBP4.95□□□□□ -1.62
CD44-213ENST00000525209 RBP5P82980 135 aa4.95□□□□□ -1.62
CD44-213ENST00000525209 FMO1Q01740 532 aa4.95□□□□□ -1.62
CD44-213ENST00000525209 CHRNDQ07001 517 aa4.95□□□□□ -1.62
CD44-213ENST00000525209 BFSP1Q12934 665 aa4.95□□□□□ -1.62
CD44-213ENST00000525209 PLS1Q14651 629 aa4.95□□□□□ -1.62
CD44-213ENST00000525209 KCNB1Q14721 858 aa4.95□□□□□ -1.62
CD44-213ENST00000525209 FLYWCH1Q4VC44 716 aa4.95□□□□□ -1.62
CD44-213ENST00000525209 FAM47CQ5HY64 1035 aa4.95□□□□□ -1.62
CD44-213ENST00000525209 FAM26FQ5R3K3 315 aa4.95□□□□□ -1.62
CD44-213ENST00000525209 SLC9C2Q5TAH2 1124 aa4.95□□□□□ -1.62
CD44-213ENST00000525209 SAMD5Q5TGI4 173 aa4.95□□□□□ -1.62
CD44-213ENST00000525209 SNX30Q5VWJ9 437 aa4.95□□□□□ -1.62
CD44-213ENST00000525209 LIN54Q6MZP7 749 aa4.95□□□□□ -1.62
CD44-213ENST00000525209 CNKSR3Q6P9H4 555 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms