RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 COMTP21964 271 aa13.48□□□□□ -0.25
USP53-209ENST00000514665 RFC1P35251 1148 aaPredicted RBP13.48□□□□□ -0.25
USP53-209ENST00000514665 LONRF1Q17RB8 773 aa13.48□□□□□ -0.25
USP53-209ENST00000514665 TRAPPC11Q7Z392 1133 aa13.48□□□□□ -0.25
USP53-209ENST00000514665 ANKMY2Q8IV38 441 aa13.48□□□□□ -0.25
USP53-209ENST00000514665 DNAJC7Q99615 494 aa13.48□□□□□ -0.25
USP53-209ENST00000514665 SLC13A1Q9BZW2 595 aa13.48□□□□□ -0.25
USP53-209ENST00000514665 SEMA6BQ9H3T3 888 aa13.48□□□□□ -0.25
USP53-209ENST00000514665 FBXO28Q9NVF7 368 aa13.48□□□□□ -0.25
USP53-209ENST00000514665 MYO3BQ8WXR4 1341 aa13.48□□□□□ -0.25
USP53-209ENST00000514665 M0QYV0 167 aa13.48□□□□□ -0.25
USP53-209ENST00000514665 TBX3O15119 743 aa13.48□□□□□ -0.25
USP53-209ENST00000514665 OATP04181 439 aa13.48□□□□□ -0.25
USP53-209ENST00000514665 BCAR1P56945 870 aa13.48□□□□□ -0.25
USP53-209ENST00000514665 PPP4CP60510 307 aa13.48□□□□□ -0.25
USP53-209ENST00000514665 KIF22Q14807 665 aa13.48□□□□□ -0.25
USP53-209ENST00000514665 SNRNP35Q16560 246 aaKnown RBP13.48□□□□□ -0.25
USP53-209ENST00000514665 FAM102AQ5T9C2 384 aaPredicted RBP13.48□□□□□ -0.25
USP53-209ENST00000514665 CRLF3Q8IUI8 442 aa13.48□□□□□ -0.25
USP53-209ENST00000514665 MMGT1Q8N4V1 131 aa13.48□□□□□ -0.25
USP53-209ENST00000514665 GJD4Q96KN9 370 aaPredicted RBP13.48□□□□□ -0.25
USP53-209ENST00000514665 PACSIN1Q9BY11 444 aa13.48□□□□□ -0.25
USP53-209ENST00000514665 EPN3Q9H201 632 aa13.48□□□□□ -0.25
USP53-209ENST00000514665 PRDM4Q9UKN5 801 aa13.48□□□□□ -0.25
USP53-209ENST00000514665 OSBPP22059 807 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 TBXAS1P24557 533 aaPredicted RBP13.47□□□□□ -0.25
USP53-209ENST00000514665 CASP4P49662 377 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 JAMLQ86YT9 394 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 TMEM117Q9H0C3 514 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 VPS11Q9H270 941 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 RPAP3Q9H6T3 665 aaPredicted RBP13.47□□□□□ -0.25
USP53-209ENST00000514665 A0A087X0B3 334 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 TCRBV5S4A2TA0A5A2 114 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 KRT38O76015 456 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 SDC4P31431 198 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 KYNUQ16719 465 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 WDR72Q3MJ13 1102 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 STRIP1Q5VSL9 837 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 TRIM65Q6PJ69 517 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 WDR75Q8IWA0 830 aaKnown RBP13.47□□□□□ -0.25
USP53-209ENST00000514665 CEP120Q8N960 986 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 ATL2Q8NHH9 583 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 Q9H521 79 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 ARHGAP20Q9P2F6 1191 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 IP6K2Q9UHH9 426 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 USH1CQ9Y6N9 552 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 KDM6AO15550 1401 aaPredicted RBP13.47□□□□□ -0.25
USP53-209ENST00000514665 CCDC195A0A1B0GUA6 201 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 PIK3R2O00459 728 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 TRPA1O75762 1119 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 CHN1P15882 459 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 DUOXA2Q1HG44 320 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 GRAMD1BQ3KR37 738 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 ATG16L1Q676U5 607 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 RYBPQ8N488 228 aaPredicted RBP13.47□□□□□ -0.25
USP53-209ENST00000514665 RNF149Q8NC42 400 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 PRMT1Q99873 361 aaKnown RBP13.47□□□□□ -0.25
USP53-209ENST00000514665 PI4K2AQ9BTU6 479 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 ASNSD1Q9NWL6 643 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 PIM2Q9P1W9 311 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 KLHL8Q9P2G9 620 aaPredicted RBP13.47□□□□□ -0.25
USP53-209ENST00000514665 ZFP69BQ9UJL9 534 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 STRIP2Q9ULQ0 834 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 SPATA31A1Q5TZJ5 1347 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 MED24O75448 989 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 GPC3P51654 580 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 CDH6P55285 790 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 MAP7Q14244 749 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 NBPF9Q3BBW0 867 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 ENOSF1Q7L5Y1 443 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 TTC25Q96NG3 672 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 FAM167BQ9BTA0 163 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 AP5M1Q9H0R1 490 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 HAUS2Q9NVX0 235 aa13.47□□□□□ -0.25
USP53-209ENST00000514665 CFAP69A5D8W1 941 aa13.46□□□□□ -0.25
USP53-209ENST00000514665 WTIPA6NIX2 430 aaPredicted RBP13.46□□□□□ -0.25
USP53-209ENST00000514665 KRT7P08729 469 aa13.46□□□□□ -0.25
USP53-209ENST00000514665 HERVK_113P62684 666 aa13.46□□□□□ -0.25
USP53-209ENST00000514665 NR1H3Q13133 447 aa13.46□□□□□ -0.25
USP53-209ENST00000514665 THOC5Q13769 683 aaKnown RBP13.46□□□□□ -0.25
USP53-209ENST00000514665 ARMCX2Q7L311 632 aa13.46□□□□□ -0.25
USP53-209ENST00000514665 MORC4Q8TE76 937 aa13.46□□□□□ -0.25
USP53-209ENST00000514665 JPH1Q9HDC5 661 aaPredicted RBP13.46□□□□□ -0.25
USP53-209ENST00000514665 PITPNM2Q9BZ72 1349 aa13.46□□□□□ -0.25
USP53-209ENST00000514665 H3BQF6 201 aa13.46□□□□□ -0.25
USP53-209ENST00000514665 ARPP19P56211 112 aa13.46□□□□□ -0.25
USP53-209ENST00000514665 POLE2P56282 527 aa13.46□□□□□ -0.25
USP53-209ENST00000514665 MTMR2Q13614 643 aa13.46□□□□□ -0.25
USP53-209ENST00000514665 CENPPQ6IPU0 288 aa13.46□□□□□ -0.25
USP53-209ENST00000514665 SLC30A10Q6XR72 485 aa13.46□□□□□ -0.25
USP53-209ENST00000514665 SKA2Q8WVK7 121 aaPredicted RBP13.46□□□□□ -0.25
USP53-209ENST00000514665 ARL8AQ96BM9 186 aa13.46□□□□□ -0.25
USP53-209ENST00000514665 RBM15Q96T37 977 aaKnown RBP eCLIP13.46□□□□□ -0.25
USP53-209ENST00000514665 SMYD3Q9H7B4 428 aa13.46□□□□□ -0.25
USP53-209ENST00000514665 ACAD9Q9H845 621 aa13.46□□□□□ -0.25
USP53-209ENST00000514665 ZBTB7AO95365 584 aa13.46□□□□□ -0.26
USP53-209ENST00000514665 SRGAP2BP0DMP2 458 aa13.46□□□□□ -0.26
USP53-209ENST00000514665 EPHB1P54762 984 aa13.46□□□□□ -0.26
USP53-209ENST00000514665 SLC12A1Q13621 1099 aa13.46□□□□□ -0.26
USP53-209ENST00000514665 RWDD4Q6NW29 188 aaKnown RBP13.46□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms