RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 CLTAP09496 248 aa9.26□□□□□ -0.93
PDGFC-205ENST00000506880 RPL13P26373 211 aaKnown RBP9.26□□□□□ -0.93
PDGFC-205ENST00000506880 LIG4P49917 911 aa9.26□□□□□ -0.93
PDGFC-205ENST00000506880 YARSP54577 528 aaKnown RBP9.26□□□□□ -0.93
PDGFC-205ENST00000506880 MCCD1P59942 119 aaPredicted RBP9.26□□□□□ -0.93
PDGFC-205ENST00000506880 UBE3AQ05086 875 aa9.26□□□□□ -0.93
PDGFC-205ENST00000506880 EDRF1Q3B7T1 1238 aa9.26□□□□□ -0.93
PDGFC-205ENST00000506880 XKR4Q5GH76 650 aa9.26□□□□□ -0.93
PDGFC-205ENST00000506880 ZNF658Q5TYW1 1059 aaPredicted RBP9.26□□□□□ -0.93
PDGFC-205ENST00000506880 PDE12Q6L8Q7 609 aaKnown RBP9.26□□□□□ -0.93
PDGFC-205ENST00000506880 OTOP2Q7RTS6 562 aa9.26□□□□□ -0.93
PDGFC-205ENST00000506880 DYMQ7RTS9 669 aa9.26□□□□□ -0.93
PDGFC-205ENST00000506880 KSR1Q8IVT5 923 aa9.26□□□□□ -0.93
PDGFC-205ENST00000506880 MYOCDQ8IZQ8 938 aa9.26□□□□□ -0.93
PDGFC-205ENST00000506880 LRRC43Q8N309 656 aa9.26□□□□□ -0.93
PDGFC-205ENST00000506880 URGCPQ8TCY9 931 aa9.26□□□□□ -0.93
PDGFC-205ENST00000506880 P2RX5Q93086 422 aa9.26□□□□□ -0.93
PDGFC-205ENST00000506880 UROC1Q96N76 676 aa9.26□□□□□ -0.93
PDGFC-205ENST00000506880 TMEM175Q9BSA9 504 aa9.26□□□□□ -0.93
PDGFC-205ENST00000506880 GOLPH3LQ9H4A5 285 aa9.26□□□□□ -0.93
PDGFC-205ENST00000506880 ASB7Q9H672 318 aa9.26□□□□□ -0.93
PDGFC-205ENST00000506880 MINDY3Q9H8M7 445 aa9.26□□□□□ -0.93
PDGFC-205ENST00000506880 GDPD2Q9HCC8 539 aa9.26□□□□□ -0.93
PDGFC-205ENST00000506880 LMBRD1Q9NUN5 540 aa9.26□□□□□ -0.93
PDGFC-205ENST00000506880 DACH1Q9UI36 760 aa9.26□□□□□ -0.93
PDGFC-205ENST00000506880 TRAF3IP3Q9Y228 551 aa9.26□□□□□ -0.93
PDGFC-205ENST00000506880 PCDHB2Q9Y5E7 798 aa9.26□□□□□ -0.93
PDGFC-205ENST00000506880 ADGRA3Q8IWK6 1321 aa9.26□□□□□ -0.93
PDGFC-205ENST00000506880 GBF1Q92538 1859 aa9.25□□□□□ -0.93
PDGFC-205ENST00000506880 BICDL2A1A5D9 508 aa9.25□□□□□ -0.93
PDGFC-205ENST00000506880 ARHGEF37A1IGU5 675 aa9.25□□□□□ -0.93
PDGFC-205ENST00000506880 TLL1O43897 1013 aa9.25□□□□□ -0.93
PDGFC-205ENST00000506880 IL18RAPO95256 599 aa9.25□□□□□ -0.93
PDGFC-205ENST00000506880 FGFR1OPO95684 399 aaKnown RBP9.25□□□□□ -0.93
PDGFC-205ENST00000506880 ITGA4P13612 1032 aa9.25□□□□□ -0.93
PDGFC-205ENST00000506880 LAG3P18627 525 aa9.25□□□□□ -0.93
PDGFC-205ENST00000506880 CYP3A5P20815 502 aa9.25□□□□□ -0.93
PDGFC-205ENST00000506880 AP3M2P53677 418 aa9.25□□□□□ -0.93
PDGFC-205ENST00000506880 EPHB4P54760 987 aa9.25□□□□□ -0.93
PDGFC-205ENST00000506880 LRRC63Q05C16 580 aa9.25□□□□□ -0.93
PDGFC-205ENST00000506880 GRIK3Q13003 919 aa9.25□□□□□ -0.93
PDGFC-205ENST00000506880 DHX8Q14562 1220 aaKnown RBP9.25□□□□□ -0.93
PDGFC-205ENST00000506880 BMS1Q14692 1282 aaKnown RBP9.25□□□□□ -0.93
PDGFC-205ENST00000506880 KNOP1Q1ED39 458 aaKnown RBP9.25□□□□□ -0.93
PDGFC-205ENST00000506880 TMEM132AQ24JP5 1023 aa9.25□□□□□ -0.93
PDGFC-205ENST00000506880 ZNF568Q3ZCX4 644 aa9.25□□□□□ -0.93
PDGFC-205ENST00000506880 RBM43Q6ZSC3 357 aaKnown RBP9.25□□□□□ -0.93
PDGFC-205ENST00000506880 MAEAQ7L5Y9 396 aa9.25□□□□□ -0.93
PDGFC-205ENST00000506880 TAS1R3Q7RTX0 852 aa9.25□□□□□ -0.93
PDGFC-205ENST00000506880 RTN4RL1Q86UN2 441 aaPredicted RBP9.25□□□□□ -0.93
PDGFC-205ENST00000506880 BICD1Q96G01 975 aa9.25□□□□□ -0.93
PDGFC-205ENST00000506880 DDX27Q96GQ7 796 aaKnown RBP9.25□□□□□ -0.93
PDGFC-205ENST00000506880 DHTKD1Q96HY7 919 aaPredicted RBP9.25□□□□□ -0.93
PDGFC-205ENST00000506880 FBXL18Q96ME1 805 aa9.25□□□□□ -0.93
PDGFC-205ENST00000506880 YME1L1Q96TA2 773 aa9.25□□□□□ -0.93
PDGFC-205ENST00000506880 ZBED2Q9BTP6 218 aa9.25□□□□□ -0.93
PDGFC-205ENST00000506880 MKNK1Q9BUB5 465 aa9.25□□□□□ -0.93
PDGFC-205ENST00000506880 PANK2Q9BZ23 570 aa9.25□□□□□ -0.93
PDGFC-205ENST00000506880 LMAN2LQ9H0V9 348 aa9.25□□□□□ -0.93
PDGFC-205ENST00000506880 CLSTN2Q9H4D0 955 aa9.25□□□□□ -0.93
PDGFC-205ENST00000506880 PDZD7Q9H5P4 517 aa9.25□□□□□ -0.93
PDGFC-205ENST00000506880 RSAD1Q9HA92 442 aa9.25□□□□□ -0.93
PDGFC-205ENST00000506880 TYW1Q9NV66 732 aaKnown RBP9.25□□□□□ -0.93
PDGFC-205ENST00000506880 KIAA1468Q9P260 1216 aa9.25□□□□□ -0.93
PDGFC-205ENST00000506880 LZTS1Q9Y250 596 aa9.25□□□□□ -0.93
PDGFC-205ENST00000506880 ABLIM1O14639 778 aa9.24□□□□□ -0.93
PDGFC-205ENST00000506880 PSMA7O14818 248 aa9.24□□□□□ -0.93
PDGFC-205ENST00000506880 CALUO43852 315 aaPredicted RBP9.24□□□□□ -0.93
PDGFC-205ENST00000506880 ACRP10323 421 aa9.24□□□□□ -0.93
PDGFC-205ENST00000506880 KCNE1P15382 129 aa9.24□□□□□ -0.93
PDGFC-205ENST00000506880 POU3F3P20264 500 aaPredicted RBP9.24□□□□□ -0.93
PDGFC-205ENST00000506880 RPL9P32969 192 aaKnown RBP9.24□□□□□ -0.93
PDGFC-205ENST00000506880 MCM4P33991 863 aa9.24□□□□□ -0.93
PDGFC-205ENST00000506880 AFMP43652 599 aa9.24□□□□□ -0.93
PDGFC-205ENST00000506880 ELAVL2Q12926 359 aaKnown RBP9.24□□□□□ -0.93
PDGFC-205ENST00000506880 CUL4BQ13620 913 aa9.24□□□□□ -0.93
PDGFC-205ENST00000506880 KLHL40Q2TBA0 621 aa9.24□□□□□ -0.93
PDGFC-205ENST00000506880 KMT5BQ4FZB7 885 aa9.24□□□□□ -0.93
PDGFC-205ENST00000506880 UBXN11Q5T124 520 aa9.24□□□□□ -0.93
PDGFC-205ENST00000506880 SYCP3Q8IZU3 236 aa9.24□□□□□ -0.93
PDGFC-205ENST00000506880 MLKLQ8NB16 471 aa9.24□□□□□ -0.93
PDGFC-205ENST00000506880 LINC01599Q8WXQ3 324 aa9.24□□□□□ -0.93
PDGFC-205ENST00000506880 ZBTB10Q96DT7 871 aa9.24□□□□□ -0.93
PDGFC-205ENST00000506880 FAXDC2Q96IV6 333 aa9.24□□□□□ -0.93
PDGFC-205ENST00000506880 ACAP3Q96P50 834 aa9.24□□□□□ -0.93
PDGFC-205ENST00000506880 TCHPQ9BT92 498 aa9.24□□□□□ -0.93
PDGFC-205ENST00000506880 OXCT2Q9BYC2 517 aaPredicted RBP9.24□□□□□ -0.93
PDGFC-205ENST00000506880 NUP62CLQ9H1M0 184 aa9.24□□□□□ -0.93
PDGFC-205ENST00000506880 ZHX3Q9H4I2 956 aa9.24□□□□□ -0.93
PDGFC-205ENST00000506880 FAM124BQ9H5Z6 455 aaPredicted RBP9.24□□□□□ -0.93
PDGFC-205ENST00000506880 CNTN3Q9P232 1028 aa9.24□□□□□ -0.93
PDGFC-205ENST00000506880 COLQQ9Y215 455 aaPredicted RBP9.24□□□□□ -0.93
PDGFC-205ENST00000506880 SSX2IPQ9Y2D8 614 aa9.24□□□□□ -0.93
PDGFC-205ENST00000506880 C2CD2Q9Y426 696 aa9.24□□□□□ -0.93
PDGFC-205ENST00000506880 IPPQ9Y573 584 aa9.24□□□□□ -0.93
PDGFC-205ENST00000506880 LAMA3Q16787 3333 aa9.23□□□□□ -0.93
PDGFC-205ENST00000506880 SFI1A8K8P3 1242 aa9.23□□□□□ -0.93
PDGFC-205ENST00000506880 TMEM189-UBE2V1I3L0A0 370 aa9.23□□□□□ -0.93
PDGFC-205ENST00000506880 EXTL3O43909 919 aa9.23□□□□□ -0.93
PDGFC-205ENST00000506880 MGEA5O60502 916 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms