RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 CCDC14Q49A88 953 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 LARP1BQ659C4 914 aaKnown RBP5.51□□□□□ -1.53
USP54-216ENST00000498143 NEK5Q6P3R8 708 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 ARMCX2Q7L311 632 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 SMARCE1Q969G3 411 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 RIOK1Q9BRS2 568 aaKnown RBP5.51□□□□□ -1.53
USP54-216ENST00000498143 ALDH8A1Q9H2A2 487 aaPredicted RBP5.51□□□□□ -1.53
USP54-216ENST00000498143 CLSTN2Q9H4D0 955 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 A6NNZ2 444 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 NKRFO15226 690 aaKnown RBP eCLIP5.51□□□□□ -1.53
USP54-216ENST00000498143 OPHN1O60890 802 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 TMED10P49755 219 aaKnown RBP5.51□□□□□ -1.53
USP54-216ENST00000498143 TUBB8Q3ZCM7 444 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 CCDC117Q8IWD4 279 aaPredicted RBP5.51□□□□□ -1.53
USP54-216ENST00000498143 IFT81Q8WYA0 676 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 APBB2Q92870 758 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 KCNB2Q92953 911 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 HAUS1Q96CS2 278 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 NR1H4Q96RI1 486 aaPredicted RBP5.51□□□□□ -1.53
USP54-216ENST00000498143 POLE3Q9NRF9 147 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 THG1LQ9NWX6 298 aaKnown RBP5.51□□□□□ -1.53
USP54-216ENST00000498143 AKAP7Q9P0M2 348 aaPredicted RBP5.51□□□□□ -1.53
USP54-216ENST00000498143 MRPS23Q9Y3D9 190 aaKnown RBP5.51□□□□□ -1.53
USP54-216ENST00000498143 UBN2Q6ZU65 1347 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 E9PMD0 336 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 CETN3O15182 167 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 P4HA2O15460 535 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 SNX2O60749 519 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 TMCC1O94876 653 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 LRG1P02750 347 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 FDX1P10109 184 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 GHRP10912 638 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 STIP1P31948 543 aaKnown RBP5.5□□□□□ -1.53
USP54-216ENST00000498143 ICAM3P32942 547 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 GSDMDP57764 484 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 PPP4CP60510 307 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 HAND2P61296 217 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 COX10Q12887 443 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 CWF19L2Q2TBE0 894 aaKnown RBP5.5□□□□□ -1.53
USP54-216ENST00000498143 GLB1LQ6UWU2 654 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 MTSS1LQ765P7 747 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 ARHGAP22Q7Z5H3 698 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 CHPFQ8IZ52 775 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 RNF10Q8N5U6 811 aaKnown RBP5.5□□□□□ -1.53
USP54-216ENST00000498143 CELF5Q8N6W0 485 aaKnown RBP5.5□□□□□ -1.53
USP54-216ENST00000498143 MIGA1Q8NAN2 632 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 RAB3IL1Q8TBN0 382 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 MAML3Q96JK9 1138 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 XPO4Q9C0E2 1151 aaKnown RBP5.5□□□□□ -1.53
USP54-216ENST00000498143 PDRG1Q9NUG6 133 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 VPS37CA5D8V6 355 aaPredicted RBP5.5□□□□□ -1.53
USP54-216ENST00000498143 CFAP69A5D8W1 941 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 KRT75O95678 551 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 ADH1AP07327 375 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 SYPP08247 313 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 SFPQP23246 707 aaKnown RBP eCLIP5.5□□□□□ -1.53
USP54-216ENST00000498143 S100A1P23297 94 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 NEK4P51957 841 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 TNNI3KQ59H18 835 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 ODF2Q5BJF6 829 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 RILPL1Q5EBL4 403 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 FBXW10Q5XX13 1052 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 ZCCHC8Q6NZY4 707 aaKnown RBP5.5□□□□□ -1.53
USP54-216ENST00000498143 TTLL11Q8NHH1 800 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 PIP4K2CQ8TBX8 421 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 GPKOWQ92917 476 aaPredicted RBP eCLIP5.5□□□□□ -1.53
USP54-216ENST00000498143 CFAP36Q96G28 342 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 UBL7Q96S82 380 aaPredicted RBP5.5□□□□□ -1.53
USP54-216ENST00000498143 MTRQ99707 1265 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 JPH2Q9BR39 696 aaPredicted RBP5.5□□□□□ -1.53
USP54-216ENST00000498143 NUP62CLQ9H1M0 184 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 VAT1LQ9HCJ6 419 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 DDX28Q9NUL7 540 aaKnown RBP5.5□□□□□ -1.53
USP54-216ENST00000498143 PALD1Q9ULE6 856 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 PCDHB11Q9Y5F2 797 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 MORC2Q9Y6X9 1032 aaPredicted RBP5.5□□□□□ -1.53
USP54-216ENST00000498143 GAKO14976 1311 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 RREB1Q92766 1687 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 CTAGE9A4FU28 777 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 SNAP23O00161 211 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 PITPNM1O00562 1244 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 LILRB3O75022 631 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 STMN1P16949 149 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 ERVK-21P61565 698 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 NEK10Q6ZWH5 1172 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 C12orf40Q86WS4 652 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 TRIM22Q8IYM9 498 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 ST13P5Q8NFI4 369 aaPredicted RBP5.5□□□□□ -1.53
USP54-216ENST00000498143 LINS1Q8NG48 757 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 GADD45GIP1Q8TAE8 222 aaPredicted RBP5.5□□□□□ -1.53
USP54-216ENST00000498143 ABTB1Q969K4 478 aaPredicted RBP5.5□□□□□ -1.53
USP54-216ENST00000498143 GBP5Q96PP8 586 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 CCT7Q99832 543 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 CAPS2Q9BXY5 557 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 FAM126AQ9BYI3 521 aaPredicted RBP5.5□□□□□ -1.53
USP54-216ENST00000498143 ARRDC1-AS1Q9H2J1 176 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 KANSL2Q9H9L4 492 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 HOMER3Q9NSC5 361 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 SPG21Q9NZD8 308 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 RASAL2Q9UJF2 1139 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms