RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 ANKRD62A6NC57 917 aa11.62□□□□□ -0.55
USP4-214ENST00000491791 CCDC169A6NNP5 214 aa11.62□□□□□ -0.55
USP4-214ENST00000491791 TISP43B9A030 160 aa11.62□□□□□ -0.55
USP4-214ENST00000491791 BHMG1C9JSJ3 638 aaPredicted RBP11.62□□□□□ -0.55
USP4-214ENST00000491791 FOXN3O00409 490 aaPredicted RBP11.62□□□□□ -0.55
USP4-214ENST00000491791 BUB1O43683 1085 aa11.62□□□□□ -0.55
USP4-214ENST00000491791 LGR5O75473 907 aa11.62□□□□□ -0.55
USP4-214ENST00000491791 RHOXF2BP0C7M4 288 aa11.62□□□□□ -0.55
USP4-214ENST00000491791 NAMPTP43490 491 aa11.62□□□□□ -0.55
USP4-214ENST00000491791 MXI1P50539 228 aa11.62□□□□□ -0.55
USP4-214ENST00000491791 DLG4P78352 724 aa11.62□□□□□ -0.55
USP4-214ENST00000491791 CYP24A1Q07973 514 aa11.62□□□□□ -0.55
USP4-214ENST00000491791 RPS6KA1Q15418 735 aa11.62□□□□□ -0.55
USP4-214ENST00000491791 SLFN12LQ6IEE8 588 aa11.62□□□□□ -0.55
USP4-214ENST00000491791 NFRKBQ6P4R8 1299 aa11.62□□□□□ -0.55
USP4-214ENST00000491791 METTL7BQ6UX53 244 aa11.62□□□□□ -0.55
USP4-214ENST00000491791 MAEAQ7L5Y9 396 aa11.62□□□□□ -0.55
USP4-214ENST00000491791 FASTKD5Q7L8L6 764 aaKnown RBP11.62□□□□□ -0.55
USP4-214ENST00000491791 TAS1R3Q7RTX0 852 aa11.62□□□□□ -0.55
USP4-214ENST00000491791 ANKRD35Q8N283 1001 aa11.62□□□□□ -0.55
USP4-214ENST00000491791 GPD1LQ8N335 351 aa11.62□□□□□ -0.55
USP4-214ENST00000491791 RASGEF1CQ8N431 466 aa11.62□□□□□ -0.55
USP4-214ENST00000491791 CAGE1Q8TC20 777 aa11.62□□□□□ -0.55
USP4-214ENST00000491791 ACTRT1Q8TDG2 376 aa11.62□□□□□ -0.55
USP4-214ENST00000491791 GTF3C2Q8WUA4 911 aaPredicted RBP11.62□□□□□ -0.55
USP4-214ENST00000491791 RFFLQ8WZ73 363 aa11.62□□□□□ -0.55
USP4-214ENST00000491791 CLMNQ96JQ2 1002 aa11.62□□□□□ -0.55
USP4-214ENST00000491791 FAM167AQ96KS9 214 aa11.62□□□□□ -0.55
USP4-214ENST00000491791 MPHOSPH6Q99547 160 aaKnown RBP11.62□□□□□ -0.55
USP4-214ENST00000491791 AGPAT1Q99943 283 aa11.62□□□□□ -0.55
USP4-214ENST00000491791 RHOXF2Q9BQY4 288 aa11.62□□□□□ -0.55
USP4-214ENST00000491791 R3HDMLQ9H3Y0 253 aa11.62□□□□□ -0.55
USP4-214ENST00000491791 ZNF302Q9NR11 478 aa11.62□□□□□ -0.55
USP4-214ENST00000491791 NRBP2Q9NSY0 501 aa11.62□□□□□ -0.55
USP4-214ENST00000491791 ADGRA3Q8IWK6 1321 aa11.61□□□□□ -0.55
USP4-214ENST00000491791 GSTTP1A0A1W2PQM5 241 aa11.61□□□□□ -0.55
USP4-214ENST00000491791 IGF2BP3O00425 579 aaKnown RBP eCLIP11.61□□□□□ -0.55
USP4-214ENST00000491791 GAS2O43903 313 aaKnown RBP11.61□□□□□ -0.55
USP4-214ENST00000491791 EXTL3O43909 919 aa11.61□□□□□ -0.55
USP4-214ENST00000491791 FARP2O94887 1054 aaPredicted RBP11.61□□□□□ -0.55
USP4-214ENST00000491791 KIF4AO95239 1232 aa11.61□□□□□ -0.55
USP4-214ENST00000491791 GCLMP48507 274 aa11.61□□□□□ -0.55
USP4-214ENST00000491791 AARSP49588 968 aaKnown RBP eCLIP11.61□□□□□ -0.55
USP4-214ENST00000491791 GALCP54803 685 aa11.61□□□□□ -0.55
USP4-214ENST00000491791 GCNT1Q02742 428 aa11.61□□□□□ -0.55
USP4-214ENST00000491791 EMC2Q15006 297 aa11.61□□□□□ -0.55
USP4-214ENST00000491791 PSMD6Q15008 389 aa11.61□□□□□ -0.55
USP4-214ENST00000491791 CLUL1Q15846 466 aa11.61□□□□□ -0.55
USP4-214ENST00000491791 CBWD2Q8IUF1 395 aa11.61□□□□□ -0.55
USP4-214ENST00000491791 RHOT2Q8IXI1 618 aa11.61□□□□□ -0.55
USP4-214ENST00000491791 FBXL13Q8NEE6 735 aa11.61□□□□□ -0.55
USP4-214ENST00000491791 HELQQ8TDG4 1101 aa11.61□□□□□ -0.55
USP4-214ENST00000491791 AENQ8WTP8 325 aaKnown RBP11.61□□□□□ -0.55
USP4-214ENST00000491791 SCFD2Q8WU76 684 aa11.61□□□□□ -0.55
USP4-214ENST00000491791 HES6Q96HZ4 224 aa11.61□□□□□ -0.55
USP4-214ENST00000491791 CAPZA3Q96KX2 299 aa11.61□□□□□ -0.55
USP4-214ENST00000491791 POLR3FQ9H1D9 316 aaPredicted RBP11.61□□□□□ -0.55
USP4-214ENST00000491791 ASCC2Q9H1I8 757 aaPredicted RBP11.61□□□□□ -0.55
USP4-214ENST00000491791 PCIF1Q9H4Z3 704 aa11.61□□□□□ -0.55
USP4-214ENST00000491791 EFCC1Q9HA90 598 aa11.61□□□□□ -0.55
USP4-214ENST00000491791 UBE2TQ9NPD8 197 aaPredicted RBP11.61□□□□□ -0.55
USP4-214ENST00000491791 MYH9P35579 1960 aaKnown RBP11.6□□□□□ -0.55
USP4-214ENST00000491791 IGKV6-21A0A0C4DH24 114 aa11.6□□□□□ -0.55
USP4-214ENST00000491791 LRRIQ3A6PVS8 624 aaPredicted RBP11.6□□□□□ -0.55
USP4-214ENST00000491791 TULP1O00294 542 aaPredicted RBP11.6□□□□□ -0.55
USP4-214ENST00000491791 RTN2O75298 545 aa11.6□□□□□ -0.55
USP4-214ENST00000491791 MAFO75444 373 aaPredicted RBP11.6□□□□□ -0.55
USP4-214ENST00000491791 LDHAP00338 332 aaKnown RBP11.6□□□□□ -0.55
USP4-214ENST00000491791 TNFAIP3P21580 790 aa11.6□□□□□ -0.55
USP4-214ENST00000491791 UBA1P22314 1058 aaKnown RBP11.6□□□□□ -0.55
USP4-214ENST00000491791 SLC26A2P50443 739 aa11.6□□□□□ -0.55
USP4-214ENST00000491791 MFAP3P55082 362 aa11.6□□□□□ -0.55
USP4-214ENST00000491791 CNTN2Q02246 1040 aa11.6□□□□□ -0.55
USP4-214ENST00000491791 SP3Q02447 781 aa11.6□□□□□ -0.55
USP4-214ENST00000491791 GPS2Q13227 327 aa11.6□□□□□ -0.55
USP4-214ENST00000491791 CRHR2Q13324 411 aa11.6□□□□□ -0.55
USP4-214ENST00000491791 NNTQ13423 1086 aa11.6□□□□□ -0.55
USP4-214ENST00000491791 PRPF4BQ13523 1007 aaKnown RBP11.6□□□□□ -0.55
USP4-214ENST00000491791 PLS1Q14651 629 aa11.6□□□□□ -0.55
USP4-214ENST00000491791 SMC1AQ14683 1233 aaKnown RBP11.6□□□□□ -0.55
USP4-214ENST00000491791 CASP8Q14790 479 aa11.6□□□□□ -0.55
USP4-214ENST00000491791 TERF2Q15554 542 aa11.6□□□□□ -0.55
USP4-214ENST00000491791 CCDC181Q5TID7 509 aa11.6□□□□□ -0.55
USP4-214ENST00000491791 FAM160B1Q5W0V3 765 aa11.6□□□□□ -0.55
USP4-214ENST00000491791 ZPBP2Q6X784 338 aa11.6□□□□□ -0.55
USP4-214ENST00000491791 PLPPR4Q7Z2D5 763 aa11.6□□□□□ -0.55
USP4-214ENST00000491791 NT5DC3Q86UY8 548 aa11.6□□□□□ -0.55
USP4-214ENST00000491791 ARHGEF19Q8IW93 802 aa11.6□□□□□ -0.55
USP4-214ENST00000491791 USP38Q8NB14 1042 aa11.6□□□□□ -0.55
USP4-214ENST00000491791 RDH13Q8NBN7 331 aa11.6□□□□□ -0.55
USP4-214ENST00000491791 U2AF1L4Q8WU68 220 aaKnown RBP11.6□□□□□ -0.55
USP4-214ENST00000491791 PSPC1Q8WXF1 523 aaKnown RBP11.6□□□□□ -0.55
USP4-214ENST00000491791 SEPT1Q8WYJ6 367 aa11.6□□□□□ -0.55
USP4-214ENST00000491791 KREMEN1Q96MU8 473 aa11.6□□□□□ -0.55
USP4-214ENST00000491791 PCYT2Q99447 389 aa11.6□□□□□ -0.55
USP4-214ENST00000491791 ACBD3Q9H3P7 528 aa11.6□□□□□ -0.55
USP4-214ENST00000491791 MROH8Q9H579 483 aa11.6□□□□□ -0.55
USP4-214ENST00000491791 GDF3Q9NR23 364 aa11.6□□□□□ -0.55
USP4-214ENST00000491791 SEPT9Q9UHD8 586 aaPredicted RBP11.6□□□□□ -0.55
USP4-214ENST00000491791 NOCTQ9UK39 431 aaKnown RBP11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms