RNA–Protein interactions for RNA: ENST00000488596.5

CD46-215, Transcript of CD46 molecule, human

TSL 3

Gene CD46, Length 872 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD46-215	ENST00000488596	ZNF512	Q96ME7	567 aa	Predicted RBP	4.37	□□□□□ -1.71
CD46-215	ENST00000488596	USP36	Q9P275	1121 aa	Known RBP	4.37	□□□□□ -1.71
CD46-215	ENST00000488596	DNAI1	Q9UI46	699 aa		4.37	□□□□□ -1.71
CD46-215	ENST00000488596	RCAN3	Q9UKA8	241 aa		4.37	□□□□□ -1.71
CD46-215	ENST00000488596	TMPRSS11E	Q9UL52	423 aa		4.37	□□□□□ -1.71
CD46-215	ENST00000488596	USP18	Q9UMW8	372 aa		4.37	□□□□□ -1.71
CD46-215	ENST00000488596	GOLGA6L6	A8MZA4	724 aa		4.36	□□□□□ -1.71
CD46-215	ENST00000488596	PCDHGA12	O60330	932 aa		4.36	□□□□□ -1.71
CD46-215	ENST00000488596	STC2	O76061	302 aa		4.36	□□□□□ -1.71
CD46-215	ENST00000488596	HNRNPL	P14866	589 aa	Known RBP eCLIP	4.36	□□□□□ -1.71	4e-7	■□□□□ 9.2
CD46-215	ENST00000488596	CCND1	P24385	295 aa		4.36	□□□□□ -1.71
CD46-215	ENST00000488596	IL12RB1	P42701	662 aa		4.36	□□□□□ -1.71
CD46-215	ENST00000488596	PTTG1IP	P53801	180 aa		4.36	□□□□□ -1.71
CD46-215	ENST00000488596	ODF1	Q14990	250 aa		4.36	□□□□□ -1.71
CD46-215	ENST00000488596	CLUL1	Q15846	466 aa		4.36	□□□□□ -1.71
CD46-215	ENST00000488596	UGT8	Q16880	541 aa		4.36	□□□□□ -1.71
CD46-215	ENST00000488596	PITRM1	Q5JRX3	1037 aa		4.36	□□□□□ -1.71
CD46-215	ENST00000488596	TOR2A	Q5JU69	321 aa		4.36	□□□□□ -1.71
CD46-215	ENST00000488596	KRT40	Q6A162	431 aa		4.36	□□□□□ -1.71
CD46-215	ENST00000488596	KIAA1841	Q6NSI8	718 aa		4.36	□□□□□ -1.71
CD46-215	ENST00000488596	LYSMD2	Q8IV50	215 aa		4.36	□□□□□ -1.71
CD46-215	ENST00000488596	MDGA1	Q8NFP4	955 aa		4.36	□□□□□ -1.71
CD46-215	ENST00000488596	JDP2	Q8WYK2	163 aa		4.36	□□□□□ -1.71
CD46-215	ENST00000488596	DYDC2	Q96IM9	177 aa		4.36	□□□□□ -1.71
CD46-215	ENST00000488596	WDR92	Q96MX6	357 aa		4.36	□□□□□ -1.71
CD46-215	ENST00000488596	SLC2A13	Q96QE2	648 aa		4.36	□□□□□ -1.71
CD46-215	ENST00000488596	QRSL1	Q9H0R6	528 aa	Known RBP	4.36	□□□□□ -1.71
CD46-215	ENST00000488596	MKS1	Q9NXB0	559 aa		4.36	□□□□□ -1.71
CD46-215	ENST00000488596	KCMF1	Q9P0J7	381 aa		4.36	□□□□□ -1.71
CD46-215	ENST00000488596	FZD1	Q9UP38	647 aa		4.36	□□□□□ -1.71
CD46-215	ENST00000488596	PCDHGA9	Q9Y5G4	932 aa	Known RBP	4.36	□□□□□ -1.71
CD46-215	ENST00000488596	PCDHGA8	Q9Y5G5	932 aa		4.36	□□□□□ -1.71
CD46-215	ENST00000488596	PCDHGA7	Q9Y5G6	932 aa		4.36	□□□□□ -1.71
CD46-215	ENST00000488596	PCDHGA6	Q9Y5G7	932 aa		4.36	□□□□□ -1.71
CD46-215	ENST00000488596	PCDHGA3	Q9Y5H0	932 aa		4.36	□□□□□ -1.71
CD46-215	ENST00000488596	PCDHGA2	Q9Y5H1	932 aa		4.36	□□□□□ -1.71
CD46-215	ENST00000488596	MYPN	Q86TC9	1320 aa		4.36	□□□□□ -1.71
CD46-215	ENST00000488596	SHTN1	A0MZ66	631 aa		4.35	□□□□□ -1.71
CD46-215	ENST00000488596	FZD9	O00144	591 aa		4.35	□□□□□ -1.71
CD46-215	ENST00000488596	MFAP3L	O75121	409 aa		4.35	□□□□□ -1.71
CD46-215	ENST00000488596	LMNA	P02545	664 aa	Known RBP	4.35	□□□□□ -1.71
CD46-215	ENST00000488596	JUN	P05412	331 aa	Known RBP	4.35	□□□□□ -1.71
CD46-215	ENST00000488596	ENPP1	P22413	925 aa		4.35	□□□□□ -1.71
CD46-215	ENST00000488596	RAB27A	P51159	221 aa		4.35	□□□□□ -1.71
CD46-215	ENST00000488596	NEK2	P51955	445 aa		4.35	□□□□□ -1.71
CD46-215	ENST00000488596	LGALS4	P56470	323 aa		4.35	□□□□□ -1.71
CD46-215	ENST00000488596	CCT2	P78371	535 aa	Known RBP	4.35	□□□□□ -1.71
CD46-215	ENST00000488596	SRSF2	Q01130	221 aa	Known RBP	4.35	□□□□□ -1.71
CD46-215	ENST00000488596	TRIM25	Q14258	630 aa	Known RBP	4.35	□□□□□ -1.71
CD46-215	ENST00000488596	CSRP2	Q16527	193 aa		4.35	□□□□□ -1.71
CD46-215	ENST00000488596	FSCN1	Q16658	493 aa	Known RBP	4.35	□□□□□ -1.71
CD46-215	ENST00000488596	MFSD5	Q6N075	450 aa		4.35	□□□□□ -1.71
CD46-215	ENST00000488596	BMP8A	Q7Z5Y6	402 aa		4.35	□□□□□ -1.71
CD46-215	ENST00000488596	ZBTB46	Q86UZ6	589 aa		4.35	□□□□□ -1.71
CD46-215	ENST00000488596	CMTM4	Q8IZR5	234 aa		4.35	□□□□□ -1.71
CD46-215	ENST00000488596	PROKR1	Q8TCW9	393 aa		4.35	□□□□□ -1.71
CD46-215	ENST00000488596	HOOK2	Q96ED9	719 aa		4.35	□□□□□ -1.71
CD46-215	ENST00000488596	ACAP3	Q96P50	834 aa		4.35	□□□□□ -1.71
CD46-215	ENST00000488596	HAPLN2	Q9GZV7	340 aa		4.35	□□□□□ -1.71
CD46-215	ENST00000488596	MTG2	Q9H4K7	406 aa		4.35	□□□□□ -1.71
CD46-215	ENST00000488596	AASDHPPT	Q9NRN7	309 aa		4.35	□□□□□ -1.71
CD46-215	ENST00000488596	CCM2L	Q9NUG4	571 aa	Predicted RBP	4.35	□□□□□ -1.71
CD46-215	ENST00000488596	POLR3B	Q9NW08	1133 aa	Predicted RBP	4.35	□□□□□ -1.71
CD46-215	ENST00000488596	DNAJC28	Q9NX36	388 aa		4.35	□□□□□ -1.71
CD46-215	ENST00000488596	NCDN	Q9UBB6	729 aa		4.35	□□□□□ -1.71
CD46-215	ENST00000488596	PACSIN3	Q9UKS6	424 aa		4.35	□□□□□ -1.71
CD46-215	ENST00000488596	ST20-MTHFS	A0A0A6YYL1	179 aa		4.34	□□□□□ -1.71
CD46-215	ENST00000488596	RHOBTB3	O94955	611 aa		4.34	□□□□□ -1.71
CD46-215	ENST00000488596	NUDT3	O95989	172 aa		4.34	□□□□□ -1.71
CD46-215	ENST00000488596	ITGB1	P05556	798 aa		4.34	□□□□□ -1.71
CD46-215	ENST00000488596	PFKM	P08237	780 aa		4.34	□□□□□ -1.71
CD46-215	ENST00000488596	RBP3	P10745	1247 aa		4.34	□□□□□ -1.71
CD46-215	ENST00000488596	OSM	P13725	252 aa		4.34	□□□□□ -1.71
CD46-215	ENST00000488596	HK1	P19367	917 aa		4.34	□□□□□ -1.71
CD46-215	ENST00000488596	ZFP36	P26651	326 aa	Known RBP	4.34	□□□□□ -1.71
CD46-215	ENST00000488596	KIR2DL3	P43628	341 aa		4.34	□□□□□ -1.71
CD46-215	ENST00000488596	BCAR1	P56945	870 aa		4.34	□□□□□ -1.71
CD46-215	ENST00000488596	CDK17	Q00537	523 aa		4.34	□□□□□ -1.71
CD46-215	ENST00000488596	MCL1	Q07820	350 aa		4.34	□□□□□ -1.71
CD46-215	ENST00000488596	SPIDR	Q14159	915 aa		4.34	□□□□□ -1.71
CD46-215	ENST00000488596	ACAP2	Q15057	778 aa		4.34	□□□□□ -1.71
CD46-215	ENST00000488596	LRRC41	Q15345	812 aa		4.34	□□□□□ -1.71
CD46-215	ENST00000488596	CCDC142	Q17RM4	750 aa		4.34	□□□□□ -1.71
CD46-215	ENST00000488596	NAIF1	Q69YI7	327 aa	Predicted RBP	4.34	□□□□□ -1.71
CD46-215	ENST00000488596	PNMA8A	Q86V59	439 aa	Predicted RBP	4.34	□□□□□ -1.71
CD46-215	ENST00000488596	AMOTL1	Q8IY63	956 aa		4.34	□□□□□ -1.71
CD46-215	ENST00000488596	NTN5	Q8WTR8	489 aa	Predicted RBP	4.34	□□□□□ -1.71
CD46-215	ENST00000488596	ST8SIA2	Q92186	375 aa		4.34	□□□□□ -1.71
CD46-215	ENST00000488596	RPGR	Q92834	1020 aa	Known RBP	4.34	□□□□□ -1.71
CD46-215	ENST00000488596	ARL8A	Q96BM9	186 aa		4.34	□□□□□ -1.71
CD46-215	ENST00000488596	ORAI2	Q96SN7	254 aa		4.34	□□□□□ -1.71
CD46-215	ENST00000488596	NOL10	Q9BSC4	688 aa	Known RBP	4.34	□□□□□ -1.71
CD46-215	ENST00000488596	KCTD10	Q9H3F6	313 aa		4.34	□□□□□ -1.71
CD46-215	ENST00000488596	METTL14	Q9HCE5	456 aa	Known RBP	4.34	□□□□□ -1.71
CD46-215	ENST00000488596	DPP7	Q9UHL4	492 aa		4.34	□□□□□ -1.71
CD46-215	ENST00000488596	PRSS50	Q9UI38	385 aa		4.34	□□□□□ -1.71
CD46-215	ENST00000488596	HS3ST4	Q9Y661	456 aa		4.34	□□□□□ -1.71
CD46-215	ENST00000488596	EID1	Q9Y6B2	187 aa		4.34	□□□□□ -1.71
CD46-215	ENST00000488596	NUMBL	Q9Y6R0	609 aa		4.34	□□□□□ -1.71
CD46-215	ENST00000488596	COL4A3	Q01955	1670 aa		4.34	□□□□□ -1.71

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