RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 VPS37BQ9H9H4 285 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 TTC7AQ9ULT0 858 aaPredicted RBP6.66□□□□□ -1.34
VPS13D-209ENST00000487188 USP20Q9Y2K6 914 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 COMMD3-BMI1R4GMX3 469 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 KDM3AQ9Y4C1 1321 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 USP54Q70EL1 1684 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 LRRN2O75325 713 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 PON1P27169 355 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 DSG1Q02413 1049 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 SFSWAPQ12872 951 aaKnown RBP6.66□□□□□ -1.34
VPS13D-209ENST00000487188 GSTA3Q16772 222 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 SLFN11Q7Z7L1 901 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 MTDHQ86UE4 582 aaKnown RBP6.66□□□□□ -1.34
VPS13D-209ENST00000487188 DAGLBQ8NCG7 672 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 CEP70Q8NHQ1 597 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 C1orf54Q8WWF1 131 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 C9orf72Q96LT7 481 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 PNMA5Q96PV4 448 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 IWS1Q96ST2 819 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 ATP8A2Q9NTI2 1148 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 TMOD3Q9NYL9 352 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 KIAA1024Q9UPX6 916 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 STXBP5LQ9Y2K9 1186 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.66□□□□□ -1.34
VPS13D-209ENST00000487188 STARD13Q9Y3M8 1113 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 ALG6Q9Y672 507 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 DDX3YO15523 660 aaKnown RBP6.65□□□□□ -1.34
VPS13D-209ENST00000487188 EYA4O95677 639 aa6.65□□□□□ -1.34
VPS13D-209ENST00000487188 PGM1P36871 562 aa6.65□□□□□ -1.34
VPS13D-209ENST00000487188 ADCY7P51828 1080 aa6.65□□□□□ -1.34
VPS13D-209ENST00000487188 YARSP54577 528 aaKnown RBP6.65□□□□□ -1.34
VPS13D-209ENST00000487188 COG7P83436 770 aa6.65□□□□□ -1.34
VPS13D-209ENST00000487188 OCRLQ01968 901 aa6.65□□□□□ -1.34
VPS13D-209ENST00000487188 MGAT5Q09328 741 aa6.65□□□□□ -1.34
VPS13D-209ENST00000487188 PDIA5Q14554 519 aa6.65□□□□□ -1.34
VPS13D-209ENST00000487188 GRM4Q14833 912 aa6.65□□□□□ -1.34
VPS13D-209ENST00000487188 Q4G0T1 1027 aa6.65□□□□□ -1.34
VPS13D-209ENST00000487188 RFWD3Q6PCD5 774 aa6.65□□□□□ -1.34
VPS13D-209ENST00000487188 C4orf50Q6ZRC1 276 aa6.65□□□□□ -1.34
VPS13D-209ENST00000487188 MAP7D3Q8IWC1 876 aa6.65□□□□□ -1.34
VPS13D-209ENST00000487188 DNAJC10Q8IXB1 793 aa6.65□□□□□ -1.34
VPS13D-209ENST00000487188 C4orf33Q8N1A6 199 aa6.65□□□□□ -1.34
VPS13D-209ENST00000487188 VGLL2Q8N8G2 317 aa6.65□□□□□ -1.34
VPS13D-209ENST00000487188 PRELID2Q8N945 189 aa6.65□□□□□ -1.34
VPS13D-209ENST00000487188 SH3TC2Q8TF17 1288 aa6.65□□□□□ -1.34
VPS13D-209ENST00000487188 GRK7Q8WTQ7 553 aa6.65□□□□□ -1.34
VPS13D-209ENST00000487188 NMD3Q96D46 503 aaKnown RBP6.65□□□□□ -1.34
VPS13D-209ENST00000487188 SNF8Q96H20 258 aa6.65□□□□□ -1.34
VPS13D-209ENST00000487188 LZTS2Q9BRK4 669 aa6.65□□□□□ -1.34
VPS13D-209ENST00000487188 MMTAG2Q9BU76 263 aaKnown RBP6.65□□□□□ -1.34
VPS13D-209ENST00000487188 TRABDQ9H4I3 376 aa6.65□□□□□ -1.34
VPS13D-209ENST00000487188 SLCO1B3Q9NPD5 702 aa6.65□□□□□ -1.34
VPS13D-209ENST00000487188 TMEM260Q9NX78 707 aa6.65□□□□□ -1.34
VPS13D-209ENST00000487188 IL1RAPL1Q9NZN1 696 aa6.65□□□□□ -1.34
VPS13D-209ENST00000487188 PRKAG3Q9UGI9 489 aa6.65□□□□□ -1.34
VPS13D-209ENST00000487188 SLC4A7Q9Y6M7 1214 aa6.65□□□□□ -1.34
VPS13D-209ENST00000487188 PCDH11YQ9BZA8 1340 aa6.65□□□□□ -1.34
VPS13D-209ENST00000487188 EXOC3O60645 756 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 TDP2O95551 362 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 TTC4O95801 387 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 LYNP07948 512 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 PLA2G4BP0C869 781 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 GM2AP17900 193 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 SOX5P35711 763 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 PRKCIP41743 596 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 GYG1P46976 350 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 POU5F1Q01860 360 aaKnown RBP6.65□□□□□ -1.35
VPS13D-209ENST00000487188 AP1B1Q10567 949 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 TRIM28Q13263 835 aaKnown RBP6.65□□□□□ -1.35
VPS13D-209ENST00000487188 STAT4Q14765 748 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 MYBPC3Q14896 1274 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 ADGRA1Q86SQ6 560 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 SPATA24Q86W54 205 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 DZIP1Q86YF9 867 aaKnown RBP6.65□□□□□ -1.35
VPS13D-209ENST00000487188 GJA10Q969M2 543 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 MPP4Q96JB8 637 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 THAP2Q9H0W7 228 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 DNAJC12Q9UKB3 198 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 PAIP2BQ9ULR5 123 aaKnown RBP6.65□□□□□ -1.35
VPS13D-209ENST00000487188 NAALADL1Q9UQQ1 740 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 NPHP3-ACAD11A0A0J9YXS1 232 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 E9PMD0 336 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 CLIC2O15247 247 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 GCNT3O95395 438 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 FOXN2P32314 431 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 GJC1P36383 396 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 ITGA8P53708 1063 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 AP2B1P63010 937 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 NR1H3Q13133 447 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 DRAP1Q14919 205 aaPredicted RBP6.65□□□□□ -1.35
VPS13D-209ENST00000487188 LIN52Q52LA3 116 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 RBM26Q5T8P6 1007 aaKnown RBP6.65□□□□□ -1.35
VPS13D-209ENST00000487188 MARK2Q7KZI7 788 aaKnown RBP6.65□□□□□ -1.35
VPS13D-209ENST00000487188 MIGA2Q7L4E1 593 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 FRMD5Q7Z6J6 570 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 ZCRB1Q8TBF4 217 aaKnown RBP6.65□□□□□ -1.35
VPS13D-209ENST00000487188 ALG3Q92685 438 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 BORCS6Q96GS4 357 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 NR1H4Q96RI1 486 aaPredicted RBP6.65□□□□□ -1.35
VPS13D-209ENST00000487188 ZSWIM1Q9BR11 485 aa6.65□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms