RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, human

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGN1-215	ENST00000485550	NOMO2	Q5JPE7	1267 aa		11.79	□□□□□ -0.52
HMGN1-215	ENST00000485550	GLB1L	Q6UWU2	654 aa		11.79	□□□□□ -0.52
HMGN1-215	ENST00000485550	OTOP3	Q7RTS5	596 aa		11.79	□□□□□ -0.52
HMGN1-215	ENST00000485550	SLFN12	Q8IYM2	578 aa		11.79	□□□□□ -0.52
HMGN1-215	ENST00000485550	RNF149	Q8NC42	400 aa		11.79	□□□□□ -0.52
HMGN1-215	ENST00000485550	SLC22A17	Q8WUG5	538 aa		11.79	□□□□□ -0.52
HMGN1-215	ENST00000485550	PSPC1	Q8WXF1	523 aa	Known RBP	11.79	□□□□□ -0.52
HMGN1-215	ENST00000485550	RSAD2	Q8WXG1	361 aa		11.79	□□□□□ -0.52
HMGN1-215	ENST00000485550	TNFRSF25	Q93038	417 aa		11.79	□□□□□ -0.52
HMGN1-215	ENST00000485550	GTF3C6	Q969F1	213 aa		11.79	□□□□□ -0.52
HMGN1-215	ENST00000485550	EIF2AK1	Q9BQI3	630 aa	Known RBP	11.79	□□□□□ -0.52
HMGN1-215	ENST00000485550	MRPL9	Q9BYD2	267 aa	Known RBP	11.79	□□□□□ -0.52
HMGN1-215	ENST00000485550	DHX33	Q9H6R0	707 aa	Known RBP	11.79	□□□□□ -0.52
HMGN1-215	ENST00000485550	ZSWIM4	Q9H7M6	989 aa		11.79	□□□□□ -0.52
HMGN1-215	ENST00000485550	NRDE2	Q9H7Z3	1164 aa		11.79	□□□□□ -0.52
HMGN1-215	ENST00000485550	TBC1D13	Q9NVG8	400 aa		11.79	□□□□□ -0.52
HMGN1-215	ENST00000485550	DLL3	Q9NYJ7	618 aa		11.79	□□□□□ -0.52
HMGN1-215	ENST00000485550	DNAJB4	Q9UDY4	337 aa		11.79	□□□□□ -0.52
HMGN1-215	ENST00000485550	CA14	Q9ULX7	337 aa		11.79	□□□□□ -0.52
HMGN1-215	ENST00000485550	PCDHB2	Q9Y5E7	798 aa		11.79	□□□□□ -0.52
HMGN1-215	ENST00000485550	TDRD15	B5MCY1	1934 aa	Known RBP	11.78	□□□□□ -0.52
HMGN1-215	ENST00000485550	DCN	P07585	359 aa	Known RBP	11.78	□□□□□ -0.52
HMGN1-215	ENST00000485550	GALT	P07902	379 aa		11.78	□□□□□ -0.52
HMGN1-215	ENST00000485550	SKI	P12755	728 aa		11.78	□□□□□ -0.52
HMGN1-215	ENST00000485550	HOXA11	P31270	313 aa	Predicted RBP	11.78	□□□□□ -0.52
HMGN1-215	ENST00000485550	RFC5	P40937	340 aa		11.78	□□□□□ -0.52
HMGN1-215	ENST00000485550	AFF1	P51825	1210 aa	Known RBP	11.78	□□□□□ -0.52
HMGN1-215	ENST00000485550	GUCY1B3	Q02153	619 aa		11.78	□□□□□ -0.52
HMGN1-215	ENST00000485550	CALCRL	Q16602	461 aa		11.78	□□□□□ -0.52
HMGN1-215	ENST00000485550	AGMO	Q6ZNB7	445 aa		11.78	□□□□□ -0.52
HMGN1-215	ENST00000485550	SRGAP1	Q7Z6B7	1085 aa		11.78	□□□□□ -0.52
HMGN1-215	ENST00000485550	GPR149	Q86SP6	731 aa		11.78	□□□□□ -0.52
HMGN1-215	ENST00000485550	FERMT3	Q86UX7	667 aa		11.78	□□□□□ -0.52
HMGN1-215	ENST00000485550	ZNF280B	Q86YH2	543 aa		11.78	□□□□□ -0.52
HMGN1-215	ENST00000485550	DIS3L2	Q8IYB7	885 aa	Known RBP	11.78	□□□□□ -0.52
HMGN1-215	ENST00000485550	BCL7C	Q8WUZ0	217 aa	Predicted RBP	11.78	□□□□□ -0.52
HMGN1-215	ENST00000485550	RUBCN	Q92622	972 aa		11.78	□□□□□ -0.52
HMGN1-215	ENST00000485550	PGBD4	Q96DM1	585 aa		11.78	□□□□□ -0.52
HMGN1-215	ENST00000485550	MTR	Q99707	1265 aa		11.78	□□□□□ -0.52
HMGN1-215	ENST00000485550	TRAIP	Q9BWF2	469 aa		11.78	□□□□□ -0.52
HMGN1-215	ENST00000485550	SFXN1	Q9H9B4	322 aa		11.78	□□□□□ -0.52
HMGN1-215	ENST00000485550	TBC1D17	Q9HA65	648 aa		11.78	□□□□□ -0.52
HMGN1-215	ENST00000485550	AGPAT5	Q9NUQ2	364 aa		11.78	□□□□□ -0.52
HMGN1-215	ENST00000485550	PCDHA12	Q9UN75	941 aa		11.78	□□□□□ -0.52
HMGN1-215	ENST00000485550	B4GALT3	O60512	393 aa		11.77	□□□□□ -0.53
HMGN1-215	ENST00000485550	N4BP1	O75113	896 aa	Known RBP	11.77	□□□□□ -0.53
HMGN1-215	ENST00000485550	ZNF623	O75123	536 aa		11.77	□□□□□ -0.53
HMGN1-215	ENST00000485550	POMC	P01189	267 aa		11.77	□□□□□ -0.53
HMGN1-215	ENST00000485550	SP9	P0CG40	484 aa		11.77	□□□□□ -0.53
HMGN1-215	ENST00000485550	CTSA	P10619	480 aa		11.77	□□□□□ -0.53
HMGN1-215	ENST00000485550	HOXB3	P14651	431 aa	Predicted RBP	11.77	□□□□□ -0.53
HMGN1-215	ENST00000485550	SLC11A1	P49279	550 aa		11.77	□□□□□ -0.53
HMGN1-215	ENST00000485550	RAB27A	P51159	221 aa		11.77	□□□□□ -0.53
HMGN1-215	ENST00000485550	ST3GAL1	Q11201	340 aa		11.77	□□□□□ -0.53
HMGN1-215	ENST00000485550	TRIM29	Q14134	588 aa		11.77	□□□□□ -0.53
HMGN1-215	ENST00000485550	UBXN11	Q5T124	520 aa		11.77	□□□□□ -0.53
HMGN1-215	ENST00000485550	ZC3H14	Q6PJT7	736 aa	Known RBP	11.77	□□□□□ -0.53
HMGN1-215	ENST00000485550	SPNS2	Q8IVW8	549 aa		11.77	□□□□□ -0.53
HMGN1-215	ENST00000485550	EXOC8	Q8IYI6	725 aa		11.77	□□□□□ -0.53
HMGN1-215	ENST00000485550	PIGO	Q8TEQ8	1089 aa		11.77	□□□□□ -0.53
HMGN1-215	ENST00000485550	TCP11	Q8WWU5	503 aa		11.77	□□□□□ -0.53
HMGN1-215	ENST00000485550	IGSF21	Q96ID5	467 aa		11.77	□□□□□ -0.53
HMGN1-215	ENST00000485550	TTC12	Q9H892	705 aa	Predicted RBP	11.77	□□□□□ -0.53
HMGN1-215	ENST00000485550	XPNPEP1	Q9NQW7	623 aa		11.77	□□□□□ -0.53
HMGN1-215	ENST00000485550	IGSF9	Q9P2J2	1179 aa		11.77	□□□□□ -0.53
HMGN1-215	ENST00000485550	WNT16	Q9UBV4	365 aa		11.77	□□□□□ -0.53
HMGN1-215	ENST00000485550	IRAK3	Q9Y616	596 aa		11.77	□□□□□ -0.53
HMGN1-215	ENST00000485550	COL4A3	Q01955	1670 aa		11.76	□□□□□ -0.53
HMGN1-215	ENST00000485550	ASAP2	O43150	1006 aa		11.76	□□□□□ -0.53
HMGN1-215	ENST00000485550	NEMF	O60524	1076 aa		11.76	□□□□□ -0.53
HMGN1-215	ENST00000485550	DDHD2	O94830	711 aa		11.76	□□□□□ -0.53
HMGN1-215	ENST00000485550	ERLIN2	O94905	339 aa		11.76	□□□□□ -0.53
HMGN1-215	ENST00000485550	SSB	P05455	408 aa	Known RBP eCLIP	11.76	□□□□□ -0.53
HMGN1-215	ENST00000485550	MYB	P10242	640 aa		11.76	□□□□□ -0.53
HMGN1-215	ENST00000485550	KLRC2	P26717	231 aa		11.76	□□□□□ -0.53
HMGN1-215	ENST00000485550	GBP2	P32456	591 aa	Predicted RBP	11.76	□□□□□ -0.53
HMGN1-215	ENST00000485550	GIT2	Q14161	759 aa		11.76	□□□□□ -0.53
HMGN1-215	ENST00000485550	MAEA	Q7L5Y9	396 aa		11.76	□□□□□ -0.53
HMGN1-215	ENST00000485550	MRPL10	Q7Z7H8	261 aa	Known RBP	11.76	□□□□□ -0.53
HMGN1-215	ENST00000485550	DDX53	Q86TM3	631 aa	Known RBP	11.76	□□□□□ -0.53
HMGN1-215	ENST00000485550	URGCP	Q8TCY9	931 aa		11.76	□□□□□ -0.53
HMGN1-215	ENST00000485550	ASAP3	Q8TDY4	903 aa		11.76	□□□□□ -0.53
HMGN1-215	ENST00000485550	CPB2	Q96IY4	423 aa		11.76	□□□□□ -0.53
HMGN1-215	ENST00000485550	CCDC43	Q96MW1	224 aa	Known RBP	11.76	□□□□□ -0.53
HMGN1-215	ENST00000485550	FAM193B	Q96PV7	902 aa	Predicted RBP	11.76	□□□□□ -0.53
HMGN1-215	ENST00000485550	HSD17B14	Q9BPX1	270 aa		11.76	□□□□□ -0.53
HMGN1-215	ENST00000485550	APOL6	Q9BWW8	343 aa		11.76	□□□□□ -0.53
HMGN1-215	ENST00000485550	EIF2A	Q9BY44	585 aa	Known RBP	11.76	□□□□□ -0.53
HMGN1-215	ENST00000485550	TMEM60	Q9H2L4	133 aa		11.76	□□□□□ -0.53
HMGN1-215	ENST00000485550	RSAD1	Q9HA92	442 aa		11.76	□□□□□ -0.53
HMGN1-215	ENST00000485550	HES2	Q9Y543	173 aa		11.76	□□□□□ -0.53
HMGN1-215	ENST00000485550	PPME1	Q9Y570	386 aa		11.76	□□□□□ -0.53
HMGN1-215	ENST00000485550	CHD8	Q9HCK8	2581 aa		11.75	□□□□□ -0.53
HMGN1-215	ENST00000485550	INO80B-WBP1	J3KQ70	363 aa		11.75	□□□□□ -0.53
HMGN1-215	ENST00000485550	ALDH2	P05091	517 aa		11.75	□□□□□ -0.53
HMGN1-215	ENST00000485550	ITGA4	P13612	1032 aa		11.75	□□□□□ -0.53
HMGN1-215	ENST00000485550	MCM7	P33993	719 aa		11.75	□□□□□ -0.53
HMGN1-215	ENST00000485550	PTPN14	Q15678	1187 aa		11.75	□□□□□ -0.53
HMGN1-215	ENST00000485550	PPFIBP1	Q86W92	1011 aa		11.75	□□□□□ -0.53
HMGN1-215	ENST00000485550	CDR2L	Q86X02	465 aa	Predicted RBP	11.75	□□□□□ -0.53

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