RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 SLC39A5Q6ZMH5 540 aa11.08□□□□□ -0.64
USP39-215ENST00000481409 CATSPER4Q7RTX7 472 aa11.08□□□□□ -0.64
USP39-215ENST00000481409 APTXQ7Z2E3 356 aaKnown RBP11.08□□□□□ -0.64
USP39-215ENST00000481409 CD302Q8IX05 232 aa11.08□□□□□ -0.64
USP39-215ENST00000481409 FAM126BQ8IXS8 530 aa11.08□□□□□ -0.64
USP39-215ENST00000481409 BORCS6Q96GS4 357 aa11.08□□□□□ -0.64
USP39-215ENST00000481409 TCHPQ9BT92 498 aa11.08□□□□□ -0.64
USP39-215ENST00000481409 MSTO1Q9BUK6 570 aa11.08□□□□□ -0.64
USP39-215ENST00000481409 TARS2Q9BW92 718 aaKnown RBP11.08□□□□□ -0.64
USP39-215ENST00000481409 SENP6Q9GZR1 1112 aaPredicted RBP11.08□□□□□ -0.64
USP39-215ENST00000481409 AGPAT5Q9NUQ2 364 aa11.08□□□□□ -0.64
USP39-215ENST00000481409 IMPACTQ9P2X3 320 aa11.08□□□□□ -0.64
USP39-215ENST00000481409 CDY2AQ9Y6F7 541 aa11.08□□□□□ -0.64
USP39-215ENST00000481409 ITIH6Q6UXX5 1313 aa11.08□□□□□ -0.64
USP39-215ENST00000481409 DCDC2CA8MYV0 355 aa11.07□□□□□ -0.64
USP39-215ENST00000481409 B4GALT4O60513 344 aa11.07□□□□□ -0.64
USP39-215ENST00000481409 TSPAN1O60635 241 aa11.07□□□□□ -0.64
USP39-215ENST00000481409 SKIP12755 728 aa11.07□□□□□ -0.64
USP39-215ENST00000481409 ARF4P18085 180 aaPredicted RBP11.07□□□□□ -0.64
USP39-215ENST00000481409 THPOP40225 353 aa11.07□□□□□ -0.64
USP39-215ENST00000481409 CYP2J2P51589 502 aa11.07□□□□□ -0.64
USP39-215ENST00000481409 CETN1Q12798 172 aa11.07□□□□□ -0.64
USP39-215ENST00000481409 TRIM14Q14142 442 aa11.07□□□□□ -0.64
USP39-215ENST00000481409 ZNF568Q3ZCX4 644 aa11.07□□□□□ -0.64
USP39-215ENST00000481409 SLC27A1Q6PCB7 646 aa11.07□□□□□ -0.64
USP39-215ENST00000481409 ZBTB10Q96DT7 871 aa11.07□□□□□ -0.64
USP39-215ENST00000481409 PDLIM2Q96JY6 352 aa11.07□□□□□ -0.64
USP39-215ENST00000481409 MFSD14AQ96MC6 490 aa11.07□□□□□ -0.64
USP39-215ENST00000481409 ERGIC2Q96RQ1 377 aa11.07□□□□□ -0.64
USP39-215ENST00000481409 OSMRQ99650 979 aa11.07□□□□□ -0.64
USP39-215ENST00000481409 CBWD1Q9BRT8 395 aa11.07□□□□□ -0.64
USP39-215ENST00000481409 NUP58Q9BVL2 599 aa11.07□□□□□ -0.64
USP39-215ENST00000481409 TRAIPQ9BWF2 469 aa11.07□□□□□ -0.64
USP39-215ENST00000481409 XPO4Q9C0E2 1151 aaKnown RBP11.07□□□□□ -0.64
USP39-215ENST00000481409 NDST4Q9H3R1 872 aa11.07□□□□□ -0.64
USP39-215ENST00000481409 C11orf49Q9H6J7 331 aa11.07□□□□□ -0.64
USP39-215ENST00000481409 MINDY3Q9H8M7 445 aa11.07□□□□□ -0.64
USP39-215ENST00000481409 IFNKQ9P0W0 207 aa11.07□□□□□ -0.64
USP39-215ENST00000481409 ABLIM1O14639 778 aa11.06□□□□□ -0.64
USP39-215ENST00000481409 RPS6KA5O75582 802 aa11.06□□□□□ -0.64
USP39-215ENST00000481409 IL18RAPO95256 599 aa11.06□□□□□ -0.64
USP39-215ENST00000481409 CHRNA1P02708 482 aa11.06□□□□□ -0.64
USP39-215ENST00000481409 AFPP02771 609 aaKnown RBP11.06□□□□□ -0.64
USP39-215ENST00000481409 CLTAP09496 248 aa11.06□□□□□ -0.64
USP39-215ENST00000481409 IQCF3P0C7M6 154 aa11.06□□□□□ -0.64
USP39-215ENST00000481409 CKBP12277 381 aa11.06□□□□□ -0.64
USP39-215ENST00000481409 MATR3P43243 847 aaKnown RBP eCLIP11.06□□□□□ -0.64
USP39-215ENST00000481409 MNX1P50219 401 aaPredicted RBP11.06□□□□□ -0.64
USP39-215ENST00000481409 VAMP7P51809 220 aa11.06□□□□□ -0.64
USP39-215ENST00000481409 CLDN10P78369 228 aa11.06□□□□□ -0.64
USP39-215ENST00000481409 PSMD6Q15008 389 aa11.06□□□□□ -0.64
USP39-215ENST00000481409 NECAB2Q7Z6G3 386 aa11.06□□□□□ -0.64
USP39-215ENST00000481409 NT5DC4Q86YG4 428 aa11.06□□□□□ -0.64
USP39-215ENST00000481409 HACE1Q8IYU2 909 aa11.06□□□□□ -0.64
USP39-215ENST00000481409 DHX38Q92620 1227 aaKnown RBP11.06□□□□□ -0.64
USP39-215ENST00000481409 PPP1R9BQ96SB3 815 aa11.06□□□□□ -0.64
USP39-215ENST00000481409 MCOLN1Q9GZU1 580 aa11.06□□□□□ -0.64
USP39-215ENST00000481409 PCIF1Q9H4Z3 704 aa11.06□□□□□ -0.64
USP39-215ENST00000481409 PDZD7Q9H5P4 517 aa11.06□□□□□ -0.64
USP39-215ENST00000481409 ASB7Q9H672 318 aa11.06□□□□□ -0.64
USP39-215ENST00000481409 PLEKHA5Q9HAU0 1116 aa11.06□□□□□ -0.64
USP39-215ENST00000481409 TRMT13Q9NUP7 481 aaKnown RBP11.06□□□□□ -0.64
USP39-215ENST00000481409 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.06□□□□□ -0.64
USP39-215ENST00000481409 ADRB2P07550 413 aa11.05□□□□□ -0.64
USP39-215ENST00000481409 TPM1P09493 284 aa11.05□□□□□ -0.64
USP39-215ENST00000481409 SELPP16109 830 aa11.05□□□□□ -0.64
USP39-215ENST00000481409 HOXA11P31270 313 aaPredicted RBP11.05□□□□□ -0.64
USP39-215ENST00000481409 GRM5P41594 1212 aa11.05□□□□□ -0.64
USP39-215ENST00000481409 CASP4P49662 377 aa11.05□□□□□ -0.64
USP39-215ENST00000481409 RAB27AP51159 221 aa11.05□□□□□ -0.64
USP39-215ENST00000481409 UBXN1Q04323 297 aa11.05□□□□□ -0.64
USP39-215ENST00000481409 CYP24A1Q07973 514 aa11.05□□□□□ -0.64
USP39-215ENST00000481409 KCNH2Q12809 1159 aa11.05□□□□□ -0.64
USP39-215ENST00000481409 FIGNQ5HY92 759 aa11.05□□□□□ -0.64
USP39-215ENST00000481409 MIIPQ5JXC2 388 aa11.05□□□□□ -0.64
USP39-215ENST00000481409 FBXO47Q5MNV8 452 aa11.05□□□□□ -0.64
USP39-215ENST00000481409 SPECC1LQ69YQ0 1117 aa11.05□□□□□ -0.64
USP39-215ENST00000481409 CREBRFQ8IUR6 639 aa11.05□□□□□ -0.64
USP39-215ENST00000481409 VSTM4Q8IW00 320 aa11.05□□□□□ -0.64
USP39-215ENST00000481409 BRSK2Q8IWQ3 736 aa11.05□□□□□ -0.64
USP39-215ENST00000481409 PARD3BQ8TEW8 1205 aa11.05□□□□□ -0.64
USP39-215ENST00000481409 RSPH1Q8WYR4 309 aa11.05□□□□□ -0.64
USP39-215ENST00000481409 APBB2Q92870 758 aa11.05□□□□□ -0.64
USP39-215ENST00000481409 SLC35C1Q96A29 364 aa11.05□□□□□ -0.64
USP39-215ENST00000481409 FAM81BQ96LP2 452 aa11.05□□□□□ -0.64
USP39-215ENST00000481409 FNBP1Q96RU3 617 aa11.05□□□□□ -0.64
USP39-215ENST00000481409 FAM213AQ9BRX8 229 aa11.05□□□□□ -0.64
USP39-215ENST00000481409 FTHL17Q9BXU8 183 aa11.05□□□□□ -0.64
USP39-215ENST00000481409 EDEM3Q9BZQ6 932 aa11.05□□□□□ -0.64
USP39-215ENST00000481409 VPS16Q9H269 839 aa11.05□□□□□ -0.64
USP39-215ENST00000481409 TOPORSQ9NS56 1045 aaPredicted RBP11.05□□□□□ -0.64
USP39-215ENST00000481409 TAB2Q9NYJ8 693 aa11.05□□□□□ -0.64
USP39-215ENST00000481409 ANKFY1Q9P2R3 1169 aa11.05□□□□□ -0.64
USP39-215ENST00000481409 CPSF3Q9UKF6 684 aaKnown RBP11.05□□□□□ -0.64
USP39-215ENST00000481409 GINS2Q9Y248 185 aa11.05□□□□□ -0.64
USP39-215ENST00000481409 DERAQ9Y315 318 aa11.05□□□□□ -0.64
USP39-215ENST00000481409 PCNTO95613 3336 aa11.05□□□□□ -0.64
USP39-215ENST00000481409 B4GALT5O43286 388 aa11.04□□□□□ -0.64
USP39-215ENST00000481409 AP5Z1O43299 807 aa11.04□□□□□ -0.64
USP39-215ENST00000481409 FAM189A1O60320 539 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms