RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 ARRDC4Q8NCT1 418 aa6.94□□□□□ -1.3
SF3B1-209ENST00000479532 ZNF396Q96N95 335 aaPredicted RBP6.94□□□□□ -1.3
SF3B1-209ENST00000479532 PPP1R9BQ96SB3 815 aa6.94□□□□□ -1.3
SF3B1-209ENST00000479532 SENP7Q9BQF6 1050 aa6.94□□□□□ -1.3
SF3B1-209ENST00000479532 TRIM56Q9BRZ2 755 aaKnown RBP6.94□□□□□ -1.3
SF3B1-209ENST00000479532 ZNF577Q9BSK1 485 aa6.94□□□□□ -1.3
SF3B1-209ENST00000479532 KRTAP4-5Q9BYR2 181 aa6.94□□□□□ -1.3
SF3B1-209ENST00000479532 KATNBL1Q9H079 304 aa6.94□□□□□ -1.3
SF3B1-209ENST00000479532 YY1AP1Q9H869 796 aa6.94□□□□□ -1.3
SF3B1-209ENST00000479532 AKTIPQ9H8T0 292 aa6.94□□□□□ -1.3
SF3B1-209ENST00000479532 XPNPEP3Q9NQH7 507 aa6.94□□□□□ -1.3
SF3B1-209ENST00000479532 TBC1D22BQ9NU19 505 aa6.94□□□□□ -1.3
SF3B1-209ENST00000479532 NAGPAQ9UK23 515 aa6.94□□□□□ -1.3
SF3B1-209ENST00000479532 KIF28PB7ZC32 967 aa6.93□□□□□ -1.3
SF3B1-209ENST00000479532 KBTBD13C9JR72 458 aa6.93□□□□□ -1.3
SF3B1-209ENST00000479532 IPO5O00410 1097 aaKnown RBP6.93□□□□□ -1.3
SF3B1-209ENST00000479532 MEIS1O00470 390 aa6.93□□□□□ -1.3
SF3B1-209ENST00000479532 LAD1O00515 517 aa6.93□□□□□ -1.3
SF3B1-209ENST00000479532 TBX3O15119 743 aa6.93□□□□□ -1.3
SF3B1-209ENST00000479532 ZNF500O60304 480 aaPredicted RBP6.93□□□□□ -1.3
SF3B1-209ENST00000479532 GAS7O60861 476 aa6.93□□□□□ -1.3
SF3B1-209ENST00000479532 SMNDC1O75940 238 aaKnown RBP eCLIP6.93□□□□□ -1.3
SF3B1-209ENST00000479532 GGPS1O95749 300 aa6.93□□□□□ -1.3
SF3B1-209ENST00000479532 IGLV1-40P01703 118 aa6.93□□□□□ -1.3
SF3B1-209ENST00000479532 TFRCP02786 760 aaKnown RBP6.93□□□□□ -1.3
SF3B1-209ENST00000479532 C8AP07357 584 aa6.93□□□□□ -1.3
SF3B1-209ENST00000479532 GJB1P08034 283 aa6.93□□□□□ -1.3
SF3B1-209ENST00000479532 C6orf222P0C671 652 aaPredicted RBP6.93□□□□□ -1.3
SF3B1-209ENST00000479532 ZSCAN22P10073 491 aaPredicted RBP6.93□□□□□ -1.3
SF3B1-209ENST00000479532 ITGB5P18084 799 aa6.93□□□□□ -1.3
SF3B1-209ENST00000479532 MCM7P33993 719 aa6.93□□□□□ -1.3
SF3B1-209ENST00000479532 CALCRLQ16602 461 aa6.93□□□□□ -1.3
SF3B1-209ENST00000479532 LY6KQ17RY6 165 aa6.93□□□□□ -1.3
SF3B1-209ENST00000479532 TMEM266Q2M3C6 531 aa6.93□□□□□ -1.3
SF3B1-209ENST00000479532 SKOR2Q2VWA4 1001 aaPredicted RBP6.93□□□□□ -1.3
SF3B1-209ENST00000479532 PERM1Q5SV97 790 aa6.93□□□□□ -1.3
SF3B1-209ENST00000479532 CEP135Q66GS9 1140 aa6.93□□□□□ -1.3
SF3B1-209ENST00000479532 FERMT3Q86UX7 667 aa6.93□□□□□ -1.3
SF3B1-209ENST00000479532 SLFN12Q8IYM2 578 aa6.93□□□□□ -1.3
SF3B1-209ENST00000479532 PCSK9Q8NBP7 692 aaKnown RBP6.93□□□□□ -1.3
SF3B1-209ENST00000479532 TRPV1Q8NER1 839 aa6.93□□□□□ -1.3
SF3B1-209ENST00000479532 CRYGNQ8WXF5 182 aa6.93□□□□□ -1.3
SF3B1-209ENST00000479532 PLD4Q96BZ4 506 aa6.93□□□□□ -1.3
SF3B1-209ENST00000479532 DRC1Q96MC2 740 aa6.93□□□□□ -1.3
SF3B1-209ENST00000479532 FAM20AQ96MK3 541 aa6.93□□□□□ -1.3
SF3B1-209ENST00000479532 DEFB118Q96PH6 123 aa6.93□□□□□ -1.3
SF3B1-209ENST00000479532 POP1Q99575 1024 aaKnown RBP6.93□□□□□ -1.3
SF3B1-209ENST00000479532 TEKT3Q9BXF9 490 aa6.93□□□□□ -1.3
SF3B1-209ENST00000479532 RAB34Q9BZG1 259 aa6.93□□□□□ -1.3
SF3B1-209ENST00000479532 ZFYVE1Q9HBF4 777 aa6.93□□□□□ -1.3
SF3B1-209ENST00000479532 AGO4Q9HCK5 861 aaKnown RBP6.93□□□□□ -1.3
SF3B1-209ENST00000479532 PAK6Q9NQU5 681 aaPredicted RBP6.93□□□□□ -1.3
SF3B1-209ENST00000479532 PDGFCQ9NRA1 345 aa6.93□□□□□ -1.3
SF3B1-209ENST00000479532 KCNH7Q9NS40 1196 aa6.93□□□□□ -1.3
SF3B1-209ENST00000479532 KBTBD4Q9NVX7 518 aa6.93□□□□□ -1.3
SF3B1-209ENST00000479532 MTMR6Q9Y217 621 aa6.93□□□□□ -1.3
SF3B1-209ENST00000479532 DDX49Q9Y6V7 483 aaKnown RBP6.93□□□□□ -1.3
SF3B1-209ENST00000479532 NFASCO94856 1347 aa6.93□□□□□ -1.3
SF3B1-209ENST00000479532 IGLV3-22A0A075B6J6 115 aa6.92□□□□□ -1.3
SF3B1-209ENST00000479532 C11orf97A0A1B0GVM6 126 aaPredicted RBP6.92□□□□□ -1.3
SF3B1-209ENST00000479532 FAM86B1E9PN63 330 aa6.92□□□□□ -1.3
SF3B1-209ENST00000479532 ADAMTS3O15072 1205 aa6.92□□□□□ -1.3
SF3B1-209ENST00000479532 DYNC1LI2O43237 492 aaPredicted RBP6.92□□□□□ -1.3
SF3B1-209ENST00000479532 KPNA6O60684 536 aa6.92□□□□□ -1.3
SF3B1-209ENST00000479532 ADAMTS4O75173 837 aa6.92□□□□□ -1.3
SF3B1-209ENST00000479532 SGPL1O95470 568 aa6.92□□□□□ -1.3
SF3B1-209ENST00000479532 TDP2O95551 362 aa6.92□□□□□ -1.3
SF3B1-209ENST00000479532 F13A1P00488 732 aa6.92□□□□□ -1.3
SF3B1-209ENST00000479532 FAM86B2P0C5J1 330 aa6.92□□□□□ -1.3
SF3B1-209ENST00000479532 ZSCAN20P17040 1043 aaPredicted RBP6.92□□□□□ -1.3
SF3B1-209ENST00000479532 UBA1P22314 1058 aaKnown RBP6.92□□□□□ -1.3
SF3B1-209ENST00000479532 GJA8P48165 433 aa6.92□□□□□ -1.3
SF3B1-209ENST00000479532 GJA9P57773 515 aa6.92□□□□□ -1.3
SF3B1-209ENST00000479532 RESTQ13127 1097 aa6.92□□□□□ -1.3
SF3B1-209ENST00000479532 SF3A1Q15459 793 aaKnown RBP6.92□□□□□ -1.3
SF3B1-209ENST00000479532 ZNF174Q15697 407 aa6.92□□□□□ -1.3
SF3B1-209ENST00000479532 EARS2Q5JPH6 523 aaKnown RBP6.92□□□□□ -1.3
SF3B1-209ENST00000479532 CELF3Q5SZQ8 465 aaKnown RBP6.92□□□□□ -1.3
SF3B1-209ENST00000479532 LRCH2Q5VUJ6 765 aa6.92□□□□□ -1.3
SF3B1-209ENST00000479532 ANO1Q5XXA6 986 aa6.92□□□□□ -1.3
SF3B1-209ENST00000479532 ATL3Q6DD88 541 aa6.92□□□□□ -1.3
SF3B1-209ENST00000479532 MIS18BP1Q6P0N0 1132 aa6.92□□□□□ -1.3
SF3B1-209ENST00000479532 CCDC62Q6P9F0 684 aa6.92□□□□□ -1.3
SF3B1-209ENST00000479532 ELMSAN1Q6PJG2 1045 aa6.92□□□□□ -1.3
SF3B1-209ENST00000479532 METTL7BQ6UX53 244 aa6.92□□□□□ -1.3
SF3B1-209ENST00000479532 SV2BQ7L1I2 683 aa6.92□□□□□ -1.3
SF3B1-209ENST00000479532 CYFIP1Q7L576 1253 aa6.92□□□□□ -1.3
SF3B1-209ENST00000479532 PPTC7Q8NI37 304 aa6.92□□□□□ -1.3
SF3B1-209ENST00000479532 U2AF1L4Q8WU68 220 aaKnown RBP6.92□□□□□ -1.3
SF3B1-209ENST00000479532 TNPO1Q92973 898 aaKnown RBP6.92□□□□□ -1.3
SF3B1-209ENST00000479532 SPATA33Q96N06 139 aa6.92□□□□□ -1.3
SF3B1-209ENST00000479532 MBOAT7Q96N66 472 aa6.92□□□□□ -1.3
SF3B1-209ENST00000479532 RIT2Q99578 217 aa6.92□□□□□ -1.3
SF3B1-209ENST00000479532 MUC3BQ9H195 1237 aa6.92□□□□□ -1.3
SF3B1-209ENST00000479532 UPF3AQ9H1J1 476 aaKnown RBP6.92□□□□□ -1.3
SF3B1-209ENST00000479532 ZNF576Q9H609 170 aa6.92□□□□□ -1.3
SF3B1-209ENST00000479532 TMEM51Q9NW97 253 aa6.92□□□□□ -1.3
SF3B1-209ENST00000479532 STOML1Q9UBI4 398 aa6.92□□□□□ -1.3
SF3B1-209ENST00000479532 SLC9A2Q9UBY0 812 aa6.92□□□□□ -1.3
SF3B1-209ENST00000479532 CFAP45Q9UL16 551 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms