RNA–Protein interactions for RNA: ENST00000479525.6

ECHDC1-216, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 5

Gene ECHDC1, Length 1,368 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-216ENST00000479525 KANSL3Q9P2N6 904 aa19.24■□□□□ 0.67
ECHDC1-216ENST00000479525 NOL7Q9UMY1 257 aaKnown RBP19.24■□□□□ 0.67
ECHDC1-216ENST00000479525 KIAA1024Q9UPX6 916 aa19.24■□□□□ 0.67
ECHDC1-216ENST00000479525 E9PMD0 336 aa19.23■□□□□ 0.67
ECHDC1-216ENST00000479525 PDGFBP01127 241 aaPredicted RBP19.23■□□□□ 0.67
ECHDC1-216ENST00000479525 PRKCBP05771 671 aa19.23■□□□□ 0.67
ECHDC1-216ENST00000479525 DSC1Q08554 894 aa19.23■□□□□ 0.67
ECHDC1-216ENST00000479525 ZRSR1Q15695 479 aaKnown RBP19.23■□□□□ 0.67
ECHDC1-216ENST00000479525 TRIM67Q6ZTA4 783 aa19.23■□□□□ 0.67
ECHDC1-216ENST00000479525 CABP7Q86V35 215 aa19.23■□□□□ 0.67
ECHDC1-216ENST00000479525 ZBTB8OSQ8IWT0 167 aa19.23■□□□□ 0.67
ECHDC1-216ENST00000479525 CNNM3Q8NE01 707 aa19.23■□□□□ 0.67
ECHDC1-216ENST00000479525 SNX29Q8TEQ0 813 aa19.23■□□□□ 0.67
ECHDC1-216ENST00000479525 HERC2P3Q9BVR0 1158 aa19.23■□□□□ 0.67
ECHDC1-216ENST00000479525 LRWD1Q9UFC0 647 aa19.23■□□□□ 0.67
ECHDC1-216ENST00000479525 A0A1B0GUA9 196 aa19.22■□□□□ 0.67
ECHDC1-216ENST00000479525 CASTOR2A6NHX0 329 aa19.22■□□□□ 0.67
ECHDC1-216ENST00000479525 SOD2P04179 222 aa19.22■□□□□ 0.67
ECHDC1-216ENST00000479525 XRCC6P12956 609 aaKnown RBP eCLIP19.22■□□□□ 0.67
ECHDC1-216ENST00000479525 RPL17P18621 184 aaKnown RBP19.22■□□□□ 0.67
ECHDC1-216ENST00000479525 CYP11B2P19099 503 aa19.22■□□□□ 0.67
ECHDC1-216ENST00000479525 CLCN4P51793 760 aa19.22■□□□□ 0.67
ECHDC1-216ENST00000479525 POU5F1BQ06416 359 aa19.22■□□□□ 0.67
ECHDC1-216ENST00000479525 CDCA2Q69YH5 1023 aaPredicted RBP19.22■□□□□ 0.67
ECHDC1-216ENST00000479525 MCPH1Q8NEM0 835 aa19.22■□□□□ 0.67
ECHDC1-216ENST00000479525 CCDC51Q96ER9 411 aa19.22■□□□□ 0.67
ECHDC1-216ENST00000479525 PLIN2Q99541 437 aa19.22■□□□□ 0.67
ECHDC1-216ENST00000479525 GPR62Q9BZJ7 368 aa19.22■□□□□ 0.67
ECHDC1-216ENST00000479525 MRPL17Q9NRX2 175 aaKnown RBP19.22■□□□□ 0.67
ECHDC1-216ENST00000479525 GDAQ9Y2T3 454 aa19.22■□□□□ 0.67
ECHDC1-216ENST00000479525 IRAK3Q9Y616 596 aa19.22■□□□□ 0.67
ECHDC1-216ENST00000479525 LILRB3O75022 631 aa19.21■□□□□ 0.67
ECHDC1-216ENST00000479525 URODP06132 367 aa19.21■□□□□ 0.67
ECHDC1-216ENST00000479525 IGFBP6P24592 240 aaPredicted RBP19.21■□□□□ 0.67
ECHDC1-216ENST00000479525 U2AF2P26368 475 aaKnown RBP eCLIP19.21■□□□□ 0.678e-7■■■■□ 25.7
ECHDC1-216ENST00000479525 FXR2P51116 673 aaKnown RBP eCLIP19.21■□□□□ 0.67
ECHDC1-216ENST00000479525 PRPF4BQ13523 1007 aaKnown RBP19.21■□□□□ 0.67
ECHDC1-216ENST00000479525 KCNK18Q7Z418 384 aa19.21■□□□□ 0.67
ECHDC1-216ENST00000479525 DEPTORQ8TB45 409 aa19.21■□□□□ 0.67
ECHDC1-216ENST00000479525 PBXIP1Q96AQ6 731 aa19.21■□□□□ 0.67
ECHDC1-216ENST00000479525 FBXL18Q96ME1 805 aa19.21■□□□□ 0.67
ECHDC1-216ENST00000479525 RPS6KC1Q96S38 1066 aa19.21■□□□□ 0.67
ECHDC1-216ENST00000479525 NFKBIZQ9BYH8 718 aa19.21■□□□□ 0.67
ECHDC1-216ENST00000479525 FZD8Q9H461 694 aa19.21■□□□□ 0.67
ECHDC1-216ENST00000479525 UBN1Q9NPG3 1134 aa19.21■□□□□ 0.67
ECHDC1-216ENST00000479525 PRMT7Q9NVM4 692 aaPredicted RBP19.21■□□□□ 0.67
ECHDC1-216ENST00000479525 GIT1Q9Y2X7 761 aa19.21■□□□□ 0.67
ECHDC1-216ENST00000479525 MUC6Q6W4X9 2439 aa19.21■□□□□ 0.67
ECHDC1-216ENST00000479525 TEX28O15482 410 aa19.2■□□□□ 0.66
ECHDC1-216ENST00000479525 RECQL4O94761 1208 aa19.2■□□□□ 0.66
ECHDC1-216ENST00000479525 GJB2P29033 226 aa19.2■□□□□ 0.66
ECHDC1-216ENST00000479525 RAD51AP2Q09MP3 1159 aa19.2■□□□□ 0.66
ECHDC1-216ENST00000479525 PTPN21Q16825 1174 aa19.2■□□□□ 0.66
ECHDC1-216ENST00000479525 IER5LQ5T953 404 aa19.2■□□□□ 0.66
ECHDC1-216ENST00000479525 HAUS3Q68CZ6 603 aa19.2■□□□□ 0.66
ECHDC1-216ENST00000479525 PALB2Q86YC2 1186 aa19.2■□□□□ 0.66
ECHDC1-216ENST00000479525 TMX3Q96JJ7 454 aa19.2■□□□□ 0.66
ECHDC1-216ENST00000479525 EMILIN2Q9BXX0 1053 aa19.2■□□□□ 0.66
ECHDC1-216ENST00000479525 CCDC113Q9H0I3 377 aa19.2■□□□□ 0.66
ECHDC1-216ENST00000479525 MAN1C1Q9NR34 630 aa19.2■□□□□ 0.66
ECHDC1-216ENST00000479525 DZANK1Q9NVP4 752 aa19.2■□□□□ 0.66
ECHDC1-216ENST00000479525 CITO14578 2027 aa19.2■□□□□ 0.66
ECHDC1-216ENST00000479525 PTGESO14684 152 aa19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 INPPL1O15357 1258 aa19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 RFPL2O75678 378 aa19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 MTHFRP42898 656 aa19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 GLUD2P49448 558 aa19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 ITIH3Q06033 890 aa19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 RABEP1Q15276 862 aa19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 GLRA4Q5JXX5 417 aa19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 NT5DC1Q5TFE4 455 aa19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 KIAA1841Q6NSI8 718 aa19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 FUT10Q6P4F1 479 aa19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 PRSS55Q6UWB4 352 aaPredicted RBP19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 PPP4R3CPQ6ZMV5 832 aa19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 KREMEN2Q8NCW0 462 aa19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 ST13P5Q8NFI4 369 aaPredicted RBP19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 RSPH1Q8WYR4 309 aa19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 RIPOR3Q96MK2 946 aa19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 RUSC1Q9BVN2 902 aa19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 LIMD1Q9UGP4 676 aa19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 SFI1A8K8P3 1242 aa19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 N4BP3O15049 544 aa19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 BRD1O95696 1058 aa19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 TRAPPC10P48553 1259 aa19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 VCPP55072 806 aaKnown RBP19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 GRIK3Q13003 919 aa19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 ORC2Q13416 577 aaPredicted RBP19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 GIT2Q14161 759 aa19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 PCBP1Q15365 356 aaKnown RBP eCLIP19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 MAPK6Q16659 721 aa19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 KIAA0319Q5VV43 1072 aa19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 HACE1Q8IYU2 909 aa19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 RNF168Q8IYW5 571 aaPredicted RBP19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 CEP120Q8N960 986 aa19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 IGSF22Q8N9C0 903 aa19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 MMTAG2Q9BU76 263 aaKnown RBP19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 EIF4ENIF1Q9NRA8 985 aaKnown RBP19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 NR2E1Q9Y466 385 aa19.19■□□□□ 0.66
ECHDC1-216ENST00000479525 CCDC169A6NNP5 214 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms