RNA–Protein interactions for RNA: ENST00000477573.1

RTFDC1-207, Transcript of Protein RTF2 homolog, humanhuman

TSL 1 (best)

Gene RTFDC1, Length 2,193 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-207ENST00000477573 APOBEC3HQ6NTF7 200 aaKnown RBP13.54□□□□□ -0.24
RTFDC1-207ENST00000477573 CCDC174Q6PII3 467 aa13.54□□□□□ -0.24
RTFDC1-207ENST00000477573 PALB2Q86YC2 1186 aa13.54□□□□□ -0.24
RTFDC1-207ENST00000477573 PASD1Q8IV76 773 aa13.54□□□□□ -0.24
RTFDC1-207ENST00000477573 KIF2BQ8N4N8 673 aa13.54□□□□□ -0.24
RTFDC1-207ENST00000477573 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.54□□□□□ -0.243e-6■■■□□ 15.4
RTFDC1-207ENST00000477573 OXER1Q8TDS5 423 aa13.54□□□□□ -0.24
RTFDC1-207ENST00000477573 SKA1Q96BD8 255 aa13.54□□□□□ -0.24
RTFDC1-207ENST00000477573 MPP4Q96JB8 637 aa13.54□□□□□ -0.24
RTFDC1-207ENST00000477573 CCDC42Q96M95 316 aa13.54□□□□□ -0.24
RTFDC1-207ENST00000477573 ELAC2Q9BQ52 826 aaKnown RBP13.54□□□□□ -0.24
RTFDC1-207ENST00000477573 GBA3Q9H227 469 aa13.54□□□□□ -0.24
RTFDC1-207ENST00000477573 DPH5Q9H2P9 285 aa13.54□□□□□ -0.24
RTFDC1-207ENST00000477573 TBCAO75347 108 aaKnown RBP13.53□□□□□ -0.24
RTFDC1-207ENST00000477573 PDE5AO76074 875 aa13.53□□□□□ -0.24
RTFDC1-207ENST00000477573 SEPT7Q16181 437 aaKnown RBP13.53□□□□□ -0.24
RTFDC1-207ENST00000477573 EAPPQ56P03 285 aaPredicted RBP13.53□□□□□ -0.24
RTFDC1-207ENST00000477573 PHLDB2Q86SQ0 1253 aa13.53□□□□□ -0.24
RTFDC1-207ENST00000477573 ZC3H18Q86VM9 953 aaKnown RBP13.53□□□□□ -0.24
RTFDC1-207ENST00000477573 RTKN2Q8IZC4 609 aa13.53□□□□□ -0.24
RTFDC1-207ENST00000477573 ST13P4Q8IZP2 240 aaPredicted RBP13.53□□□□□ -0.24
RTFDC1-207ENST00000477573 TTLL6Q8N841 843 aa13.53□□□□□ -0.24
RTFDC1-207ENST00000477573 TLCD1Q96CP7 247 aa13.53□□□□□ -0.24
RTFDC1-207ENST00000477573 LRMDAQ9H2I8 198 aa13.53□□□□□ -0.24
RTFDC1-207ENST00000477573 DHX36Q9H2U1 1008 aaKnown RBP13.53□□□□□ -0.24
RTFDC1-207ENST00000477573 MKS1Q9NXB0 559 aa13.53□□□□□ -0.24
RTFDC1-207ENST00000477573 SERPINA10Q9UK55 444 aa13.53□□□□□ -0.24
RTFDC1-207ENST00000477573 NOVA2Q9UNW9 492 aaKnown RBP13.53□□□□□ -0.24
RTFDC1-207ENST00000477573 HYOU1Q9Y4L1 999 aa13.53□□□□□ -0.24
RTFDC1-207ENST00000477573 PCDHA5Q9Y5H7 936 aa13.53□□□□□ -0.24
RTFDC1-207ENST00000477573 C10orf71Q711Q0 1435 aa13.53□□□□□ -0.24
RTFDC1-207ENST00000477573 BAZ2BQ9UIF8 2168 aaKnown RBP13.53□□□□□ -0.24
RTFDC1-207ENST00000477573 UNC5CO95185 931 aa13.52□□□□□ -0.24
RTFDC1-207ENST00000477573 CCDC159P0C7I6 412 aa13.52□□□□□ -0.24
RTFDC1-207ENST00000477573 BMP6P22004 513 aa13.52□□□□□ -0.24
RTFDC1-207ENST00000477573 HSD17B3P37058 310 aa13.52□□□□□ -0.24
RTFDC1-207ENST00000477573 TXKP42681 527 aa13.52□□□□□ -0.24
RTFDC1-207ENST00000477573 TRAPPC10P48553 1259 aa13.52□□□□□ -0.24
RTFDC1-207ENST00000477573 EMP3P54852 163 aa13.52□□□□□ -0.24
RTFDC1-207ENST00000477573 RTP1P59025 263 aa13.52□□□□□ -0.24
RTFDC1-207ENST00000477573 MAGOHP61326 146 aaKnown RBP13.52□□□□□ -0.24
RTFDC1-207ENST00000477573 FMR1Q06787 632 aaKnown RBP eCLIP13.52□□□□□ -0.24
RTFDC1-207ENST00000477573 TBL3Q12788 808 aaKnown RBP13.52□□□□□ -0.24
RTFDC1-207ENST00000477573 AOC3Q16853 763 aa13.52□□□□□ -0.24
RTFDC1-207ENST00000477573 METTL16Q86W50 562 aaKnown RBP13.52□□□□□ -0.24
RTFDC1-207ENST00000477573 NUP93Q8N1F7 819 aa13.52□□□□□ -0.24
RTFDC1-207ENST00000477573 MYO1HQ8N1T3 1032 aa13.52□□□□□ -0.24
RTFDC1-207ENST00000477573 ZNF579Q8NAF0 562 aaKnown RBP13.52□□□□□ -0.24
RTFDC1-207ENST00000477573 INPP5DQ92835 1189 aa13.52□□□□□ -0.24
RTFDC1-207ENST00000477573 MAGOHBQ96A72 148 aaKnown RBP13.52□□□□□ -0.24
RTFDC1-207ENST00000477573 CEP95Q96GE4 821 aa13.52□□□□□ -0.24
RTFDC1-207ENST00000477573 VPS50Q96JG6 964 aa13.52□□□□□ -0.24
RTFDC1-207ENST00000477573 HGH1Q9BTY7 390 aa13.52□□□□□ -0.24
RTFDC1-207ENST00000477573 THAP9Q9H5L6 903 aa13.52□□□□□ -0.24
RTFDC1-207ENST00000477573 USP20Q9Y2K6 914 aa13.52□□□□□ -0.24
RTFDC1-207ENST00000477573 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.52□□□□□ -0.24
RTFDC1-207ENST00000477573 GOLGA8TH3BQL2 631 aa13.52□□□□□ -0.25
RTFDC1-207ENST00000477573 STK10O94804 968 aaKnown RBP13.52□□□□□ -0.25
RTFDC1-207ENST00000477573 HEXIM1O94992 359 aaKnown RBP13.52□□□□□ -0.25
RTFDC1-207ENST00000477573 GJB6O95452 261 aa13.52□□□□□ -0.25
RTFDC1-207ENST00000477573 PARNO95453 639 aaKnown RBP13.52□□□□□ -0.25
RTFDC1-207ENST00000477573 GOLGA8HP0CJ92 632 aa13.52□□□□□ -0.25
RTFDC1-207ENST00000477573 CYP2C9P11712 490 aa13.52□□□□□ -0.25
RTFDC1-207ENST00000477573 PTPREP23469 700 aa13.52□□□□□ -0.25
RTFDC1-207ENST00000477573 CTNNA1P35221 906 aaKnown RBP13.52□□□□□ -0.25
RTFDC1-207ENST00000477573 NOVP48745 357 aa13.52□□□□□ -0.25
RTFDC1-207ENST00000477573 HERVK_113P62684 666 aa13.52□□□□□ -0.25
RTFDC1-207ENST00000477573 HSP90AA4PQ58FG1 418 aa13.52□□□□□ -0.25
RTFDC1-207ENST00000477573 SHC4Q6S5L8 630 aa13.52□□□□□ -0.25
RTFDC1-207ENST00000477573 MAMSTRQ6ZN01 415 aa13.52□□□□□ -0.25
RTFDC1-207ENST00000477573 Q6ZNX1 250 aa13.52□□□□□ -0.25
RTFDC1-207ENST00000477573 PPFIBP2Q8ND30 876 aa13.52□□□□□ -0.25
RTFDC1-207ENST00000477573 LRRC8CQ8TDW0 803 aa13.52□□□□□ -0.25
RTFDC1-207ENST00000477573 ATXN2LQ8WWM7 1075 aaKnown RBP13.52□□□□□ -0.25
RTFDC1-207ENST00000477573 DDX23Q9BUQ8 820 aaKnown RBP13.52□□□□□ -0.25
RTFDC1-207ENST00000477573 SPZ1Q9BXG8 430 aa13.52□□□□□ -0.25
RTFDC1-207ENST00000477573 EPB41L5Q9HCM4 733 aa13.52□□□□□ -0.25
RTFDC1-207ENST00000477573 DDX4Q9NQI0 724 aaKnown RBP13.52□□□□□ -0.25
RTFDC1-207ENST00000477573 ZMAT5Q9UDW3 170 aaKnown RBP13.52□□□□□ -0.25
RTFDC1-207ENST00000477573 GIT1Q9Y2X7 761 aa13.52□□□□□ -0.25
RTFDC1-207ENST00000477573 SRPRBQ9Y5M8 271 aaKnown RBP13.52□□□□□ -0.25
RTFDC1-207ENST00000477573 GPC6Q9Y625 555 aaPredicted RBP13.52□□□□□ -0.25
RTFDC1-207ENST00000477573 SLC30A1Q9Y6M5 507 aa13.52□□□□□ -0.25
RTFDC1-207ENST00000477573 KLRF2D3W0D1 207 aa13.51□□□□□ -0.25
RTFDC1-207ENST00000477573 E9PBE3 544 aa13.51□□□□□ -0.25
RTFDC1-207ENST00000477573 NPM3O75607 178 aaKnown RBP13.51□□□□□ -0.25
RTFDC1-207ENST00000477573 GLI1P08151 1106 aa13.51□□□□□ -0.25
RTFDC1-207ENST00000477573 COPB2P35606 906 aa13.51□□□□□ -0.25
RTFDC1-207ENST00000477573 TMED10P49755 219 aaKnown RBP13.51□□□□□ -0.25
RTFDC1-207ENST00000477573 EIF3BP55884 814 aaKnown RBP13.51□□□□□ -0.25
RTFDC1-207ENST00000477573 CTAG1AP78358 180 aa13.51□□□□□ -0.25
RTFDC1-207ENST00000477573 NDUFA5Q16718 116 aa13.51□□□□□ -0.25
RTFDC1-207ENST00000477573 SPATA1Q5VX52 437 aa13.51□□□□□ -0.25
RTFDC1-207ENST00000477573 UBE2Q1Q7Z7E8 422 aa13.51□□□□□ -0.25
RTFDC1-207ENST00000477573 LRRC34Q8IZ02 419 aa13.51□□□□□ -0.25
RTFDC1-207ENST00000477573 ZBED8Q8IZ13 594 aa13.51□□□□□ -0.25
RTFDC1-207ENST00000477573 BBS5Q8N3I7 341 aa13.51□□□□□ -0.25
RTFDC1-207ENST00000477573 GAB3Q8WWW8 586 aa13.51□□□□□ -0.25
RTFDC1-207ENST00000477573 HINFPQ9BQA5 517 aa13.51□□□□□ -0.25
RTFDC1-207ENST00000477573 ASCC2Q9H1I8 757 aaPredicted RBP13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms