RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 MRPL17Q9NRX2 175 aaKnown RBP13.6□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 LIMCH1Q9UPQ0 1083 aa13.6□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 TTLL13PA6NNM8 815 aa13.59□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 TEX28O15482 410 aa13.59□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 EIF5BO60841 1220 aaKnown RBP13.59□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 KLRC2P26717 231 aa13.59□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 RPA1P27694 616 aa13.59□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 MCM7P33993 719 aa13.59□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 NUBP1P53384 320 aa13.59□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 NCBP1Q09161 790 aaKnown RBP13.59□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 SLC27A1Q6PCB7 646 aa13.59□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 TMC5Q6UXY8 1006 aa13.59□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 SUGP1Q8IWZ8 645 aaKnown RBP13.59□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 FBXO18Q8NFZ0 1043 aa13.59□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 PRIMPOLQ96LW4 560 aa13.59□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 NACC1Q96RE7 527 aa13.59□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 PHOX2BQ99453 314 aa13.59□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 LLPHQ9BRT6 129 aaKnown RBP13.59□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 FOXP1Q9H334 677 aaPredicted RBP13.59□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 SMOC2Q9H3U7 446 aa13.59□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 LIMD1Q9UGP4 676 aa13.59□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 SSX2IPQ9Y2D8 614 aa13.59□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 VPS13AQ96RL7 3174 aa13.59□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 USO1O60763 962 aaKnown RBP13.58□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 SSBP05455 408 aaKnown RBP eCLIP13.58□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 ASGR2P07307 311 aa13.58□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 MUTP22033 750 aa13.58□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 AKAP5P24588 427 aa13.58□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 CA8P35219 290 aa13.58□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 OR1G1P47890 313 aa13.58□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 PTPN5P54829 565 aa13.58□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 MTMR3Q13615 1198 aa13.58□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 TRIM29Q14134 588 aa13.58□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 NAB2Q15742 525 aa13.58□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 ECM1Q16610 540 aa13.58□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 LILRA6Q6PI73 481 aa13.58□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 CYP26C1Q6V0L0 522 aa13.58□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 CDR2LQ86X02 465 aaPredicted RBP13.58□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 TMEM87AQ8NBN3 555 aa13.58□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 MCPH1Q8NEM0 835 aa13.58□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 HDAC7Q8WUI4 952 aa13.58□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 BSNDQ8WZ55 320 aa13.58□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 GPR62Q9BZJ7 368 aa13.58□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 CCDC113Q9H0I3 377 aa13.58□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 TSHZ2Q9NRE2 1034 aa13.58□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 PRG3Q9Y2Y8 225 aaPredicted RBP13.58□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 ZFHX2Q9C0A1 2572 aaPredicted RBP13.58□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 RIF1Q5UIP0 2472 aaKnown RBP13.57□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 VWA8A3KMH1 1905 aa13.57□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 CFAP54Q96N23 3096 aa13.57□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 N4BP1O75113 896 aaKnown RBP13.57□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 NPTXRO95502 500 aa13.57□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 EDN1P05305 212 aa13.57□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 URODP06132 367 aa13.57□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 CYP11B2P19099 503 aa13.57□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 FOSBP53539 338 aa13.57□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 GUCY1B3Q02153 619 aa13.57□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 GRIK3Q13003 919 aa13.57□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 TDRD5Q8NAT2 981 aaKnown RBP13.57□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 COLEC11Q9BWP8 271 aa13.57□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 PRMT7Q9NVM4 692 aaPredicted RBP13.57□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 FNIP2Q9P278 1114 aa13.57□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 PTPRZ1P23471 2315 aaPredicted RBP13.57□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 C2CD2LO14523 706 aa13.56□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 PTGESO14684 152 aa13.56□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 ADH1AP07327 375 aa13.56□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 OR52Z1P0C646 297 aa13.56□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 ATP2B1P20020 1258 aa13.56□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 U2AF2P26368 475 aaKnown RBP eCLIP13.56□□□□□ -0.242e-7■■■■□ 25
MSH5-SAPCD1-205ENST00000476085 TRAPPC10P48553 1259 aa13.56□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 GLUD2P49448 558 aa13.56□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 SAFBQ15424 915 aaKnown RBP eCLIP13.56□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 ZNF174Q15697 407 aa13.56□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 FUT10Q6P4F1 479 aa13.56□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 POTEGQ6S5H5 508 aa13.56□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 MAEAQ7L5Y9 396 aa13.56□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 OTOP3Q7RTS5 596 aa13.56□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 CCDC83Q8IWF9 413 aa13.56□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 HACE1Q8IYU2 909 aa13.56□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 ZNF707Q96C28 371 aaPredicted RBP13.56□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 C8orf76Q96K31 380 aa13.56□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 PAAF1Q9BRP4 392 aa13.56□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 CXCL16Q9H2A7 254 aa13.56□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 PDZD7Q9H5P4 517 aa13.56□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 WDR6Q9NNW5 1121 aaKnown RBP13.56□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 MAN1C1Q9NR34 630 aa13.56□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 DAXXQ9UER7 740 aaPredicted RBP13.56□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 ADAM28Q9UKQ2 775 aa13.56□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 CCDC195A0A1B0GUA6 201 aa13.55□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 LRRIQ4A6NIV6 560 aa13.55□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 ACKR2O00590 384 aa13.55□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 TOB1P50616 345 aaPredicted RBP13.55□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 FXR2P51116 673 aaKnown RBP eCLIP13.55□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 PDIA5Q14554 519 aa13.55□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 USP41Q3LFD5 358 aa13.55□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 PADI6Q6TGC4 694 aa13.55□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 CCDC149Q6ZUS6 474 aa13.55□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 ZBTB33Q86T24 672 aa13.55□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 IGSF22Q8N9C0 903 aa13.55□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 ACSF2Q96CM8 615 aaPredicted RBP13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms