RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 DAPK1P53355 1430 aa5.45□□□□□ -1.54
VPS13A-210ENST00000471439 ZNF536O15090 1300 aa5.45□□□□□ -1.54
VPS13A-210ENST00000471439 ZNF318Q5VUA4 2279 aa5.44□□□□□ -1.54
VPS13A-210ENST00000471439 ZNF292O60281 2723 aa5.44□□□□□ -1.54
VPS13A-210ENST00000471439 FBXO21O94952 628 aa5.44□□□□□ -1.54
VPS13A-210ENST00000471439 MPIG6BO95866 241 aa5.44□□□□□ -1.54
VPS13A-210ENST00000471439 ASLP04424 464 aa5.44□□□□□ -1.54
VPS13A-210ENST00000471439 AOAHP28039 575 aa5.44□□□□□ -1.54
VPS13A-210ENST00000471439 IL13RA1P78552 427 aa5.44□□□□□ -1.54
VPS13A-210ENST00000471439 AMPD3Q01432 767 aa5.44□□□□□ -1.54
VPS13A-210ENST00000471439 CPSF1Q10570 1443 aaKnown RBP5.44□□□□□ -1.54
VPS13A-210ENST00000471439 PTPROQ16827 1216 aa5.44□□□□□ -1.54
VPS13A-210ENST00000471439 PIK3R6Q5UE93 754 aa5.44□□□□□ -1.54
VPS13A-210ENST00000471439 RGMBQ6NW40 437 aa5.44□□□□□ -1.54
VPS13A-210ENST00000471439 ZCCHC8Q6NZY4 707 aaKnown RBP5.44□□□□□ -1.54
VPS13A-210ENST00000471439 LRSAM1Q6UWE0 723 aa5.44□□□□□ -1.54
VPS13A-210ENST00000471439 FAM124AQ86V42 546 aa5.44□□□□□ -1.54
VPS13A-210ENST00000471439 KLHL36Q8N4N3 616 aa5.44□□□□□ -1.54
VPS13A-210ENST00000471439 MEGF9Q9H1U4 602 aa5.44□□□□□ -1.54
VPS13A-210ENST00000471439 ARHGAP28Q9P2N2 729 aa5.44□□□□□ -1.54
VPS13A-210ENST00000471439 ST6GALNAC2Q9UJ37 374 aa5.44□□□□□ -1.54
VPS13A-210ENST00000471439 ANKRD50Q9ULJ7 1429 aa5.44□□□□□ -1.54
VPS13A-210ENST00000471439 NUB1Q9Y5A7 615 aa5.44□□□□□ -1.54
VPS13A-210ENST00000471439 COL4A3BPQ9Y5P4 624 aa5.44□□□□□ -1.54
VPS13A-210ENST00000471439 MAP2P11137 1827 aaKnown RBP5.44□□□□□ -1.54
VPS13A-210ENST00000471439 DCHS1Q96JQ0 3298 aa5.43□□□□□ -1.54
VPS13A-210ENST00000471439 POLR3AO14802 1390 aaPredicted RBP5.43□□□□□ -1.54
VPS13A-210ENST00000471439 CACNA1SQ13698 1873 aa5.43□□□□□ -1.54
VPS13A-210ENST00000471439 GPR42O15529 346 aa5.43□□□□□ -1.54
VPS13A-210ENST00000471439 LAMTOR5O43504 91 aa5.43□□□□□ -1.54
VPS13A-210ENST00000471439 B4GALT4O60513 344 aa5.43□□□□□ -1.54
VPS13A-210ENST00000471439 CSF2RBP32927 897 aa5.43□□□□□ -1.54
VPS13A-210ENST00000471439 ADCY8P40145 1251 aa5.43□□□□□ -1.54
VPS13A-210ENST00000471439 LACTBP83111 547 aaPredicted RBP5.43□□□□□ -1.54
VPS13A-210ENST00000471439 DDR1Q08345 913 aa5.43□□□□□ -1.54
VPS13A-210ENST00000471439 TMEM177Q53S58 311 aa5.43□□□□□ -1.54
VPS13A-210ENST00000471439 CDCA2Q69YH5 1023 aaPredicted RBP5.43□□□□□ -1.54
VPS13A-210ENST00000471439 Q6ZUG5 572 aa5.43□□□□□ -1.54
VPS13A-210ENST00000471439 STRA8Q7Z7C7 330 aa5.43□□□□□ -1.54
VPS13A-210ENST00000471439 NLGN4XQ8N0W4 816 aa5.43□□□□□ -1.54
VPS13A-210ENST00000471439 LOXL4Q96JB6 756 aa5.43□□□□□ -1.54
VPS13A-210ENST00000471439 KRTAP17-1Q9BYP8 105 aa5.43□□□□□ -1.54
VPS13A-210ENST00000471439 CELF4Q9BZC1 486 aaKnown RBP5.43□□□□□ -1.54
VPS13A-210ENST00000471439 GLIS2Q9BZE0 524 aaPredicted RBP5.43□□□□□ -1.54
VPS13A-210ENST00000471439 TAOK3Q9H2K8 898 aa5.43□□□□□ -1.54
VPS13A-210ENST00000471439 UCKL1Q9NWZ5 548 aa5.43□□□□□ -1.54
VPS13A-210ENST00000471439 SAMD15Q9P1V8 674 aa5.43□□□□□ -1.54
VPS13A-210ENST00000471439 ADAM29Q9UKF5 820 aa5.43□□□□□ -1.54
VPS13A-210ENST00000471439 NR2E3Q9Y5X4 410 aa5.43□□□□□ -1.54
VPS13A-210ENST00000471439 KIF7Q2M1P5 1343 aa5.43□□□□□ -1.54
VPS13A-210ENST00000471439 ADGRF5Q8IZF2 1346 aa5.43□□□□□ -1.54
VPS13A-210ENST00000471439 AFDNP55196 1824 aaKnown RBP5.42□□□□□ -1.54
VPS13A-210ENST00000471439 ZNF891A8MT65 544 aaPredicted RBP5.42□□□□□ -1.54
VPS13A-210ENST00000471439 M0R2C6 588 aa5.42□□□□□ -1.54
VPS13A-210ENST00000471439 CLASP2O75122 1294 aaKnown RBP5.42□□□□□ -1.54
VPS13A-210ENST00000471439 CYP7B1O75881 506 aa5.42□□□□□ -1.54
VPS13A-210ENST00000471439 CNOT4O95628 575 aaKnown RBP5.42□□□□□ -1.54
VPS13A-210ENST00000471439 POU3F2P20265 443 aaPredicted RBP5.42□□□□□ -1.54
VPS13A-210ENST00000471439 PTGS1P23219 599 aa5.42□□□□□ -1.54
VPS13A-210ENST00000471439 NEK4P51957 841 aa5.42□□□□□ -1.54
VPS13A-210ENST00000471439 RRADP55042 308 aa5.42□□□□□ -1.54
VPS13A-210ENST00000471439 NHLH1Q02575 133 aa5.42□□□□□ -1.54
VPS13A-210ENST00000471439 TAF7LQ5H9L4 462 aa5.42□□□□□ -1.54
VPS13A-210ENST00000471439 ERICH6BQ5W0A0 696 aa5.42□□□□□ -1.54
VPS13A-210ENST00000471439 OTOP1Q7RTM1 612 aa5.42□□□□□ -1.54
VPS13A-210ENST00000471439 KRT26Q7Z3Y9 468 aa5.42□□□□□ -1.54
VPS13A-210ENST00000471439 GGNQ86UU5 652 aa5.42□□□□□ -1.54
VPS13A-210ENST00000471439 ARHGEF25Q86VW2 580 aa5.42□□□□□ -1.54
VPS13A-210ENST00000471439 CHAC2Q8WUX2 184 aa5.42□□□□□ -1.54
VPS13A-210ENST00000471439 LEO1Q8WVC0 666 aaPredicted RBP5.42□□□□□ -1.54
VPS13A-210ENST00000471439 C8orf49Q96NF6 230 aa5.42□□□□□ -1.54
VPS13A-210ENST00000471439 CDX2Q99626 313 aaPredicted RBP5.42□□□□□ -1.54
VPS13A-210ENST00000471439 AMNQ9BXJ7 453 aa5.42□□□□□ -1.54
VPS13A-210ENST00000471439 PCDH12Q9NPG4 1184 aa5.42□□□□□ -1.54
VPS13A-210ENST00000471439 SMPD4Q9NXE4 827 aa5.42□□□□□ -1.54
VPS13A-210ENST00000471439 TRIM17Q9Y577 477 aa5.42□□□□□ -1.54
VPS13A-210ENST00000471439 MON2Q7Z3U7 1717 aa5.42□□□□□ -1.54
VPS13A-210ENST00000471439 RPGRIP1LQ68CZ1 1315 aa5.42□□□□□ -1.54
VPS13A-210ENST00000471439 TCF20Q9UGU0 1960 aaKnown RBP5.42□□□□□ -1.54
VPS13A-210ENST00000471439 EIF3AQ14152 1382 aaKnown RBP5.42□□□□□ -1.54
VPS13A-210ENST00000471439 H0Y858 1186 aa5.41□□□□□ -1.54
VPS13A-210ENST00000471439 NAT1P18440 290 aa5.41□□□□□ -1.54
VPS13A-210ENST00000471439 CNGA1P29973 690 aa5.41□□□□□ -1.54
VPS13A-210ENST00000471439 EPS15P42566 896 aa5.41□□□□□ -1.54
VPS13A-210ENST00000471439 ADAM17P78536 824 aa5.41□□□□□ -1.54
VPS13A-210ENST00000471439 ICAM4Q14773 271 aa5.41□□□□□ -1.54
VPS13A-210ENST00000471439 NOLC1Q14978 699 aaKnown RBP eCLIP5.41□□□□□ -1.54
VPS13A-210ENST00000471439 CFAP100Q494V2 611 aa5.41□□□□□ -1.54
VPS13A-210ENST00000471439 SPATS1Q496A3 300 aa5.41□□□□□ -1.54
VPS13A-210ENST00000471439 FAM109BQ6ICB4 259 aaPredicted RBP5.41□□□□□ -1.54
VPS13A-210ENST00000471439 EP400NLQ6ZTU2 488 aa5.41□□□□□ -1.54
VPS13A-210ENST00000471439 RALYLQ86SE5 291 aaKnown RBP5.41□□□□□ -1.54
VPS13A-210ENST00000471439 ASB15Q8WXK1 588 aa5.41□□□□□ -1.54
VPS13A-210ENST00000471439 ZNF333Q96JL9 665 aa5.41□□□□□ -1.54
VPS13A-210ENST00000471439 UHRF1Q96T88 793 aaPredicted RBP5.41□□□□□ -1.54
VPS13A-210ENST00000471439 KRTAP4-5Q9BYR2 181 aa5.41□□□□□ -1.54
VPS13A-210ENST00000471439 CAAP1Q9H8G2 361 aa5.41□□□□□ -1.54
VPS13A-210ENST00000471439 BARX1Q9HBU1 254 aaPredicted RBP5.41□□□□□ -1.54
VPS13A-210ENST00000471439 INCENPQ9NQS7 918 aa5.41□□□□□ -1.54
VPS13A-210ENST00000471439 MAPRE3Q9UPY8 281 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms