RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 OSMRQ99650 979 aa13.23□□□□□ -0.29
SQSTM1-206ENST00000466342 LXNQ9BS40 222 aa13.23□□□□□ -0.29
SQSTM1-206ENST00000466342 ADAMTS10Q9H324 1103 aa13.23□□□□□ -0.29
SQSTM1-206ENST00000466342 SFXN1Q9H9B4 322 aa13.23□□□□□ -0.29
SQSTM1-206ENST00000466342 RNF19AQ9NV58 838 aa13.23□□□□□ -0.29
SQSTM1-206ENST00000466342 RGL1Q9NZL6 768 aa13.23□□□□□ -0.29
SQSTM1-206ENST00000466342 AKT3Q9Y243 479 aa13.23□□□□□ -0.29
SQSTM1-206ENST00000466342 GPR179Q6PRD1 2367 aa13.23□□□□□ -0.29
SQSTM1-206ENST00000466342 FAM208BQ5VWN6 2430 aa13.22□□□□□ -0.29
SQSTM1-206ENST00000466342 MTCL1Q9Y4B5 1905 aaKnown RBP13.22□□□□□ -0.29
SQSTM1-206ENST00000466342 SLITRK3O94933 977 aa13.22□□□□□ -0.29
SQSTM1-206ENST00000466342 STBD1O95210 358 aa13.22□□□□□ -0.29
SQSTM1-206ENST00000466342 TGM1P22735 817 aa13.22□□□□□ -0.29
SQSTM1-206ENST00000466342 EIF4BP23588 611 aaKnown RBP13.22□□□□□ -0.29
SQSTM1-206ENST00000466342 DDIT3P35638 169 aa13.22□□□□□ -0.29
SQSTM1-206ENST00000466342 ALDH7A1P49419 539 aaKnown RBP13.22□□□□□ -0.29
SQSTM1-206ENST00000466342 DNM2P50570 870 aa13.22□□□□□ -0.29
SQSTM1-206ENST00000466342 CTTNQ14247 550 aaKnown RBP13.22□□□□□ -0.29
SQSTM1-206ENST00000466342 DSC3Q14574 896 aa13.22□□□□□ -0.29
SQSTM1-206ENST00000466342 ACAP1Q15027 740 aa13.22□□□□□ -0.29
SQSTM1-206ENST00000466342 HAUS3Q68CZ6 603 aa13.22□□□□□ -0.29
SQSTM1-206ENST00000466342 C15orf39Q6ZRI6 1047 aa13.22□□□□□ -0.29
SQSTM1-206ENST00000466342 FAM228AQ86W67 206 aa13.22□□□□□ -0.29
SQSTM1-206ENST00000466342 PPFIBP1Q86W92 1011 aa13.22□□□□□ -0.29
SQSTM1-206ENST00000466342 VPS52Q8N1B4 723 aa13.22□□□□□ -0.29
SQSTM1-206ENST00000466342 LRRC71Q8N4P6 559 aa13.22□□□□□ -0.29
SQSTM1-206ENST00000466342 GPR152Q8TDT2 470 aa13.22□□□□□ -0.29
SQSTM1-206ENST00000466342 AUTS2Q8WXX7 1259 aa13.22□□□□□ -0.29
SQSTM1-206ENST00000466342 NXPE3Q969Y0 559 aa13.22□□□□□ -0.29
SQSTM1-206ENST00000466342 TMEM169Q96HH4 297 aa13.22□□□□□ -0.29
SQSTM1-206ENST00000466342 ZNF396Q96N95 335 aaPredicted RBP13.22□□□□□ -0.29
SQSTM1-206ENST00000466342 HSD17B14Q9BPX1 270 aa13.22□□□□□ -0.29
SQSTM1-206ENST00000466342 ZBP1Q9H171 429 aa13.22□□□□□ -0.29
SQSTM1-206ENST00000466342 ZSWIM4Q9H7M6 989 aa13.22□□□□□ -0.29
SQSTM1-206ENST00000466342 TUFT1Q9NNX1 390 aa13.22□□□□□ -0.29
SQSTM1-206ENST00000466342 WRAP73Q9P2S5 460 aaPredicted RBP13.22□□□□□ -0.29
SQSTM1-206ENST00000466342 LRWD1Q9UFC0 647 aa13.22□□□□□ -0.29
SQSTM1-206ENST00000466342 SEPT9Q9UHD8 586 aaPredicted RBP13.22□□□□□ -0.29
SQSTM1-206ENST00000466342 FBXO4Q9UKT5 387 aa13.22□□□□□ -0.29
SQSTM1-206ENST00000466342 ZDHHC9Q9Y397 364 aa13.22□□□□□ -0.29
SQSTM1-206ENST00000466342 MORC2Q9Y6X9 1032 aaPredicted RBP13.22□□□□□ -0.29
SQSTM1-206ENST00000466342 IGKV6-21A0A0C4DH24 114 aa13.21□□□□□ -0.29
SQSTM1-206ENST00000466342 VWA3AA6NCI4 1184 aa13.21□□□□□ -0.29
SQSTM1-206ENST00000466342 SPDYE4A6NLX3 237 aa13.21□□□□□ -0.29
SQSTM1-206ENST00000466342 DDX11L8A8MPP1 907 aa13.21□□□□□ -0.29
SQSTM1-206ENST00000466342 NT5C1B-RDH14C9J2C7 533 aa13.21□□□□□ -0.29
SQSTM1-206ENST00000466342 N4BP1O75113 896 aaKnown RBP13.21□□□□□ -0.29
SQSTM1-206ENST00000466342 LYPLA2O95372 231 aa13.21□□□□□ -0.29
SQSTM1-206ENST00000466342 GLULP15104 373 aa13.21□□□□□ -0.29
SQSTM1-206ENST00000466342 RPA1P27694 616 aa13.21□□□□□ -0.29
SQSTM1-206ENST00000466342 NASPP49321 788 aaPredicted RBP13.21□□□□□ -0.29
SQSTM1-206ENST00000466342 GPC3P51654 580 aa13.21□□□□□ -0.29
SQSTM1-206ENST00000466342 POLGP54098 1239 aaPredicted RBP13.21□□□□□ -0.29
SQSTM1-206ENST00000466342 CEBPZQ03701 1054 aaKnown RBP13.21□□□□□ -0.29
SQSTM1-206ENST00000466342 MTERF2Q49AM1 385 aa13.21□□□□□ -0.29
SQSTM1-206ENST00000466342 PPM1JQ5JR12 505 aa13.21□□□□□ -0.29
SQSTM1-206ENST00000466342 ATL3Q6DD88 541 aa13.21□□□□□ -0.29
SQSTM1-206ENST00000466342 TPH2Q8IWU9 490 aa13.21□□□□□ -0.29
SQSTM1-206ENST00000466342 EXOC8Q8IYI6 725 aa13.21□□□□□ -0.29
SQSTM1-206ENST00000466342 PJA1Q8NG27 643 aa13.21□□□□□ -0.29
SQSTM1-206ENST00000466342 ATRIPQ8WXE1 791 aa13.21□□□□□ -0.29
SQSTM1-206ENST00000466342 CEP89Q96ST8 783 aa13.21□□□□□ -0.29
SQSTM1-206ENST00000466342 PPP1R16BQ96T49 567 aa13.21□□□□□ -0.29
SQSTM1-206ENST00000466342 JPH2Q9BR39 696 aaPredicted RBP13.21□□□□□ -0.29
SQSTM1-206ENST00000466342 POLR3CQ9BUI4 534 aaPredicted RBP13.21□□□□□ -0.29
SQSTM1-206ENST00000466342 DAXXQ9UER7 740 aaPredicted RBP13.21□□□□□ -0.29
SQSTM1-206ENST00000466342 USP18Q9UMW8 372 aa13.21□□□□□ -0.29
SQSTM1-206ENST00000466342 PCDHGA2Q9Y5H1 932 aa13.21□□□□□ -0.29
SQSTM1-206ENST00000466342 STK24Q9Y6E0 443 aa13.21□□□□□ -0.29
SQSTM1-206ENST00000466342 TMEM150BA6NC51 233 aa13.2□□□□□ -0.3
SQSTM1-206ENST00000466342 MAFO75444 373 aaPredicted RBP13.2□□□□□ -0.3
SQSTM1-206ENST00000466342 MED24O75448 989 aa13.2□□□□□ -0.3
SQSTM1-206ENST00000466342 SPATA31C1P0DKV0 1188 aa13.2□□□□□ -0.3
SQSTM1-206ENST00000466342 CTSAP10619 480 aa13.2□□□□□ -0.3
SQSTM1-206ENST00000466342 DARSP14868 501 aaKnown RBP13.2□□□□□ -0.3
SQSTM1-206ENST00000466342 ZSCAN20P17040 1043 aaPredicted RBP13.2□□□□□ -0.3
SQSTM1-206ENST00000466342 MUTP22033 750 aa13.2□□□□□ -0.3
SQSTM1-206ENST00000466342 YWHABP31946 246 aaKnown RBP13.2□□□□□ -0.3
SQSTM1-206ENST00000466342 GBP2P32456 591 aaPredicted RBP13.2□□□□□ -0.3
SQSTM1-206ENST00000466342 BCAR1P56945 870 aa13.2□□□□□ -0.3
SQSTM1-206ENST00000466342 NUCB2P80303 420 aa13.2□□□□□ -0.3
SQSTM1-206ENST00000466342 SLC39A14Q15043 492 aa13.2□□□□□ -0.3
SQSTM1-206ENST00000466342 PTPN14Q15678 1187 aa13.2□□□□□ -0.3
SQSTM1-206ENST00000466342 DCLRE1AQ6PJP8 1040 aa13.2□□□□□ -0.3
SQSTM1-206ENST00000466342 ANO5Q75V66 913 aa13.2□□□□□ -0.3
SQSTM1-206ENST00000466342 CATSPER3Q86XQ3 398 aa13.2□□□□□ -0.3
SQSTM1-206ENST00000466342 SNX29Q8TEQ0 813 aa13.2□□□□□ -0.3
SQSTM1-206ENST00000466342 AK8Q96MA6 479 aa13.2□□□□□ -0.3
SQSTM1-206ENST00000466342 ARHGEF3Q9NR81 526 aa13.2□□□□□ -0.3
SQSTM1-206ENST00000466342 PPME1Q9Y570 386 aa13.2□□□□□ -0.3
SQSTM1-206ENST00000466342 PP2D1A8MPX8 630 aa13.19□□□□□ -0.3
SQSTM1-206ENST00000466342 LAMTOR5O43504 91 aa13.19□□□□□ -0.3
SQSTM1-206ENST00000466342 YEATS4O95619 227 aa13.19□□□□□ -0.3
SQSTM1-206ENST00000466342 MARCKSP29966 332 aaPredicted RBP13.19□□□□□ -0.3
SQSTM1-206ENST00000466342 CCT6AP40227 531 aaKnown RBP13.19□□□□□ -0.3
SQSTM1-206ENST00000466342 STARD6P59095 220 aa13.19□□□□□ -0.3
SQSTM1-206ENST00000466342 STK38Q15208 465 aa13.19□□□□□ -0.3
SQSTM1-206ENST00000466342 FOXD4L6Q3SYB3 417 aaPredicted RBP13.19□□□□□ -0.3
SQSTM1-206ENST00000466342 CLLU1OSQ5K130 101 aa13.19□□□□□ -0.3
SQSTM1-206ENST00000466342 KRT79Q5XKE5 535 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms