RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 PPP1R37O75864 691 aa12.91□□□□□ -0.34
USP54-209ENST00000464635 LINC00271P0C7V0 271 aa12.91□□□□□ -0.34
USP54-209ENST00000464635 BMP1P13497 986 aa12.91□□□□□ -0.34
USP54-209ENST00000464635 ATP4AP20648 1035 aa12.91□□□□□ -0.34
USP54-209ENST00000464635 PMS1P54277 932 aaKnown RBP12.91□□□□□ -0.34
USP54-209ENST00000464635 EPC2Q52LR7 807 aa12.91□□□□□ -0.34
USP54-209ENST00000464635 FIGNQ5HY92 759 aa12.91□□□□□ -0.34
USP54-209ENST00000464635 FAM160B1Q5W0V3 765 aa12.91□□□□□ -0.34
USP54-209ENST00000464635 MTHFD1LQ6UB35 978 aa12.91□□□□□ -0.34
USP54-209ENST00000464635 SLC9A9Q8IVB4 645 aa12.91□□□□□ -0.34
USP54-209ENST00000464635 C12orf56Q8IXR9 622 aa12.91□□□□□ -0.34
USP54-209ENST00000464635 BANK1Q8NDB2 785 aa12.91□□□□□ -0.34
USP54-209ENST00000464635 ATP8B4Q8TF62 1192 aa12.91□□□□□ -0.34
USP54-209ENST00000464635 CCDC51Q96ER9 411 aa12.91□□□□□ -0.34
USP54-209ENST00000464635 FAM167AQ96KS9 214 aa12.91□□□□□ -0.34
USP54-209ENST00000464635 UHRF1Q96T88 793 aaPredicted RBP12.91□□□□□ -0.34
USP54-209ENST00000464635 MKNK1Q9BUB5 465 aa12.91□□□□□ -0.34
USP54-209ENST00000464635 NUP58Q9BVL2 599 aa12.91□□□□□ -0.34
USP54-209ENST00000464635 TMEM206Q9H813 350 aa12.91□□□□□ -0.34
USP54-209ENST00000464635 RC3H2Q9HBD1 1191 aaKnown RBP12.91□□□□□ -0.34
USP54-209ENST00000464635 NRBP2Q9NSY0 501 aa12.91□□□□□ -0.34
USP54-209ENST00000464635 TYW1Q9NV66 732 aaKnown RBP12.91□□□□□ -0.34
USP54-209ENST00000464635 PLXNA4Q9HCM2 1894 aa12.91□□□□□ -0.34
USP54-209ENST00000464635 MUC3AQ02505 3323 aa12.9□□□□□ -0.34
USP54-209ENST00000464635 LGALS16A8MUM7 142 aa12.9□□□□□ -0.34
USP54-209ENST00000464635 TNFRSF10AO00220 468 aa12.9□□□□□ -0.34
USP54-209ENST00000464635 ENPP3O14638 875 aa12.9□□□□□ -0.34
USP54-209ENST00000464635 N4BP3O15049 544 aa12.9□□□□□ -0.34
USP54-209ENST00000464635 PLS3P13797 630 aa12.9□□□□□ -0.34
USP54-209ENST00000464635 ENPEPQ07075 957 aa12.9□□□□□ -0.34
USP54-209ENST00000464635 MAPK7Q13164 816 aa12.9□□□□□ -0.34
USP54-209ENST00000464635 HSP90AA2PQ14568 343 aaPredicted RBP12.9□□□□□ -0.34
USP54-209ENST00000464635 SWSAP1Q6NVH7 229 aa12.9□□□□□ -0.34
USP54-209ENST00000464635 LRRC55Q6ZSA7 311 aa12.9□□□□□ -0.34
USP54-209ENST00000464635 ANO5Q75V66 913 aa12.9□□□□□ -0.34
USP54-209ENST00000464635 TRMT1LQ7Z2T5 733 aaKnown RBP12.9□□□□□ -0.34
USP54-209ENST00000464635 FRMD5Q7Z6J6 570 aa12.9□□□□□ -0.34
USP54-209ENST00000464635 RTN4RL1Q86UN2 441 aaPredicted RBP12.9□□□□□ -0.34
USP54-209ENST00000464635 SFR1Q86XK3 245 aa12.9□□□□□ -0.34
USP54-209ENST00000464635 FAM178BQ8IXR5 827 aa12.9□□□□□ -0.34
USP54-209ENST00000464635 ERGIC2Q96RQ1 377 aa12.9□□□□□ -0.34
USP54-209ENST00000464635 TUBGCP2Q9BSJ2 902 aa12.9□□□□□ -0.34
USP54-209ENST00000464635 EDEM3Q9BZQ6 932 aa12.9□□□□□ -0.34
USP54-209ENST00000464635 TMX1Q9H3N1 280 aa12.9□□□□□ -0.34
USP54-209ENST00000464635 MRPL44Q9H9J2 332 aaKnown RBP12.9□□□□□ -0.34
USP54-209ENST00000464635 METTL14Q9HCE5 456 aaKnown RBP12.9□□□□□ -0.34
USP54-209ENST00000464635 ZNF302Q9NR11 478 aa12.9□□□□□ -0.34
USP54-209ENST00000464635 INTS13Q9NVM9 706 aa12.9□□□□□ -0.34
USP54-209ENST00000464635 LMCD1Q9NZU5 365 aa12.9□□□□□ -0.34
USP54-209ENST00000464635 GABBR1Q9UBS5 961 aa12.9□□□□□ -0.34
USP54-209ENST00000464635 MAPK8IP1Q9UQF2 711 aa12.9□□□□□ -0.34
USP54-209ENST00000464635 MYO7AQ13402 2215 aa12.9□□□□□ -0.34
USP54-209ENST00000464635 NCOR1O75376 2440 aa12.9□□□□□ -0.34
USP54-209ENST00000464635 PHLPP2Q6ZVD8 1323 aa12.89□□□□□ -0.35
USP54-209ENST00000464635 ADGRA3Q8IWK6 1321 aa12.89□□□□□ -0.35
USP54-209ENST00000464635 SMIM35A0A1B0GVV1 85 aa12.89□□□□□ -0.35
USP54-209ENST00000464635 TRIM49BA6NDI0 452 aa12.89□□□□□ -0.35
USP54-209ENST00000464635 CETN3O15182 167 aa12.89□□□□□ -0.35
USP54-209ENST00000464635 MAPK13O15264 365 aa12.89□□□□□ -0.35
USP54-209ENST00000464635 SLC16A3O15427 465 aaKnown RBP12.89□□□□□ -0.35
USP54-209ENST00000464635 ZNF862O60290 1169 aa12.89□□□□□ -0.35
USP54-209ENST00000464635 HBP1O60381 514 aa12.89□□□□□ -0.35
USP54-209ENST00000464635 KLRC1P26715 233 aa12.89□□□□□ -0.35
USP54-209ENST00000464635 RFC5P40937 340 aa12.89□□□□□ -0.35
USP54-209ENST00000464635 SMTNP53814 917 aa12.89□□□□□ -0.35
USP54-209ENST00000464635 GTF2BQ00403 316 aa12.89□□□□□ -0.35
USP54-209ENST00000464635 ARID5BQ14865 1188 aa12.89□□□□□ -0.35
USP54-209ENST00000464635 MAN2A1Q16706 1144 aa12.89□□□□□ -0.35
USP54-209ENST00000464635 IER5Q5VY09 327 aa12.89□□□□□ -0.35
USP54-209ENST00000464635 TMEM192Q8IY95 271 aa12.89□□□□□ -0.35
USP54-209ENST00000464635 DAW1Q8N136 415 aa12.89□□□□□ -0.35
USP54-209ENST00000464635 MYCT1Q8N699 235 aa12.89□□□□□ -0.35
USP54-209ENST00000464635 SPC24Q8NBT2 197 aa12.89□□□□□ -0.35
USP54-209ENST00000464635 HLA-CQ95604 372 aa12.89□□□□□ -0.35
USP54-209ENST00000464635 CCDC43Q96MW1 224 aaKnown RBP12.89□□□□□ -0.35
USP54-209ENST00000464635 PPP1R16BQ96T49 567 aa12.89□□□□□ -0.35
USP54-209ENST00000464635 JPH2Q9BR39 696 aaPredicted RBP12.89□□□□□ -0.35
USP54-209ENST00000464635 NAA15Q9BXJ9 866 aaKnown RBP12.89□□□□□ -0.35
USP54-209ENST00000464635 CELF4Q9BZC1 486 aaKnown RBP12.89□□□□□ -0.35
USP54-209ENST00000464635 CDHR5Q9HBB8 845 aa12.89□□□□□ -0.35
USP54-209ENST00000464635 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.89□□□□□ -0.35
USP54-209ENST00000464635 PADI3Q9ULW8 664 aa12.89□□□□□ -0.35
USP54-209ENST00000464635 COG5Q9UP83 839 aa12.89□□□□□ -0.35
USP54-209ENST00000464635 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.89□□□□□ -0.35
USP54-209ENST00000464635 COL1A2P08123 1366 aa12.89□□□□□ -0.35
USP54-209ENST00000464635 BDP1A6H8Y1 2624 aa12.89□□□□□ -0.35
USP54-209ENST00000464635 NPHP3-ACAD11A0A0J9YXS1 232 aa12.88□□□□□ -0.35
USP54-209ENST00000464635 M0QZ92 97 aa12.88□□□□□ -0.35
USP54-209ENST00000464635 HIP1RO75146 1068 aa12.88□□□□□ -0.35
USP54-209ENST00000464635 C22orf31O95567 290 aa12.88□□□□□ -0.35
USP54-209ENST00000464635 RPLP2P05387 115 aaKnown RBP12.88□□□□□ -0.35
USP54-209ENST00000464635 TPM1P09493 284 aa12.88□□□□□ -0.35
USP54-209ENST00000464635 FECHP22830 423 aa12.88□□□□□ -0.35
USP54-209ENST00000464635 SFPQP23246 707 aaKnown RBP eCLIP12.88□□□□□ -0.35
USP54-209ENST00000464635 CTNNB1P35222 781 aa12.88□□□□□ -0.35
USP54-209ENST00000464635 GATMP50440 423 aa12.88□□□□□ -0.35
USP54-209ENST00000464635 NCKAP1LP55160 1127 aa12.88□□□□□ -0.35
USP54-209ENST00000464635 GPM6BQ13491 265 aa12.88□□□□□ -0.35
USP54-209ENST00000464635 TARBP2Q15633 366 aaKnown RBP12.88□□□□□ -0.35
USP54-209ENST00000464635 XKR9Q5GH70 373 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms