RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 DAXXQ9UER7 740 aaPredicted RBP23.4■■□□□ 1.34
HMGB3-205ENST00000455596 C19orf67A6NJJ6 358 aa23.39■■□□□ 1.33
HMGB3-205ENST00000455596 CCDC169A6NNP5 214 aa23.39■■□□□ 1.33
HMGB3-205ENST00000455596 K7ERI5 159 aa23.39■■□□□ 1.33
HMGB3-205ENST00000455596 CLASP2O75122 1294 aaKnown RBP23.39■■□□□ 1.33
HMGB3-205ENST00000455596 NR1I2O75469 434 aa23.39■■□□□ 1.33
HMGB3-205ENST00000455596 EDN1P05305 212 aa23.39■■□□□ 1.33
HMGB3-205ENST00000455596 PEX3P56589 373 aa23.39■■□□□ 1.33
HMGB3-205ENST00000455596 DMP1Q13316 513 aaPredicted RBP23.39■■□□□ 1.33
HMGB3-205ENST00000455596 CABP7Q86V35 215 aa23.39■■□□□ 1.33
HMGB3-205ENST00000455596 AUTS2Q8WXX7 1259 aa23.39■■□□□ 1.33
HMGB3-205ENST00000455596 KHSRPQ92945 711 aaKnown RBP eCLIP23.39■■□□□ 1.33
HMGB3-205ENST00000455596 INTS4Q96HW7 963 aaKnown RBP23.39■■□□□ 1.33
HMGB3-205ENST00000455596 PLIN2Q99541 437 aa23.39■■□□□ 1.33
HMGB3-205ENST00000455596 VN1R3Q9BXE9 311 aa23.39■■□□□ 1.33
HMGB3-205ENST00000455596 C1QTNF1Q9BXJ1 281 aa23.39■■□□□ 1.33
HMGB3-205ENST00000455596 C17orf75Q9HAS0 396 aa23.39■■□□□ 1.33
HMGB3-205ENST00000455596 KLK14Q9P0G3 267 aa23.39■■□□□ 1.33
HMGB3-205ENST00000455596 PRG3Q9Y2Y8 225 aaPredicted RBP23.39■■□□□ 1.33
HMGB3-205ENST00000455596 USP15Q9Y4E8 981 aaPredicted RBP23.39■■□□□ 1.33
HMGB3-205ENST00000455596 HCFC2Q9Y5Z7 792 aa23.39■■□□□ 1.33
HMGB3-205ENST00000455596 PHLPP2Q6ZVD8 1323 aa23.38■■□□□ 1.33
HMGB3-205ENST00000455596 K7ELQ4 463 aaPredicted RBP23.38■■□□□ 1.33
HMGB3-205ENST00000455596 SLC26A4O43511 780 aa23.38■■□□□ 1.33
HMGB3-205ENST00000455596 SSBP05455 408 aaKnown RBP eCLIP23.38■■□□□ 1.33
HMGB3-205ENST00000455596 NPTX2P47972 431 aa23.38■■□□□ 1.33
HMGB3-205ENST00000455596 GRIK3Q13003 919 aa23.38■■□□□ 1.33
HMGB3-205ENST00000455596 SF3A1Q15459 793 aaKnown RBP23.38■■□□□ 1.33
HMGB3-205ENST00000455596 DAW1Q8N136 415 aa23.38■■□□□ 1.33
HMGB3-205ENST00000455596 SYT2Q8N9I0 419 aaPredicted RBP23.38■■□□□ 1.33
HMGB3-205ENST00000455596 GSTCDQ8NEC7 633 aa23.38■■□□□ 1.33
HMGB3-205ENST00000455596 EPHX3Q9H6B9 360 aa23.38■■□□□ 1.33
HMGB3-205ENST00000455596 MARCH5Q9NX47 278 aa23.38■■□□□ 1.33
HMGB3-205ENST00000455596 USP20Q9Y2K6 914 aa23.38■■□□□ 1.33
HMGB3-205ENST00000455596 CITO14578 2027 aa23.38■■□□□ 1.33
HMGB3-205ENST00000455596 HOXB8P17481 243 aaPredicted RBP23.37■■□□□ 1.33
HMGB3-205ENST00000455596 GUCY2CP25092 1073 aa23.37■■□□□ 1.33
HMGB3-205ENST00000455596 MAPK7Q13164 816 aa23.37■■□□□ 1.33
HMGB3-205ENST00000455596 DCAF4L1Q3SXM0 396 aa23.37■■□□□ 1.33
HMGB3-205ENST00000455596 TMEM119Q4V9L6 283 aa23.37■■□□□ 1.33
HMGB3-205ENST00000455596 ATF7IP2Q5U623 682 aa23.37■■□□□ 1.33
HMGB3-205ENST00000455596 CALML4Q96GE6 196 aa23.37■■□□□ 1.33
HMGB3-205ENST00000455596 COLEC11Q9BWP8 271 aa23.37■■□□□ 1.33
HMGB3-205ENST00000455596 TMEM134Q9H6X4 195 aa23.37■■□□□ 1.33
HMGB3-205ENST00000455596 KMT5AQ9NQR1 393 aa23.37■■□□□ 1.33
HMGB3-205ENST00000455596 SNTG2Q9NY99 539 aa23.37■■□□□ 1.33
HMGB3-205ENST00000455596 MUC3AQ02505 3323 aa23.37■■□□□ 1.33
HMGB3-205ENST00000455596 PLXNA3P51805 1871 aa23.36■■□□□ 1.33
HMGB3-205ENST00000455596 PI4K2BG5E9Z4 385 aa23.36■■□□□ 1.33
HMGB3-205ENST00000455596 SOD2P04179 222 aa23.36■■□□□ 1.33
HMGB3-205ENST00000455596 SYT1P21579 422 aa23.36■■□□□ 1.33
HMGB3-205ENST00000455596 LONP1P36776 959 aaKnown RBP23.36■■□□□ 1.33
HMGB3-205ENST00000455596 UBA7P41226 1012 aa23.36■■□□□ 1.33
HMGB3-205ENST00000455596 PTPN14Q15678 1187 aa23.36■■□□□ 1.33
HMGB3-205ENST00000455596 NT5DC1Q5TFE4 455 aa23.36■■□□□ 1.33
HMGB3-205ENST00000455596 EEF1DP3Q658K8 133 aa23.36■■□□□ 1.33
HMGB3-205ENST00000455596 APBB1IPQ7Z5R6 666 aaPredicted RBP23.36■■□□□ 1.33
HMGB3-205ENST00000455596 HERC2P3Q9BVR0 1158 aa23.36■■□□□ 1.33
HMGB3-205ENST00000455596 KCND2Q9NZV8 630 aa23.36■■□□□ 1.33
HMGB3-205ENST00000455596 RBM19Q9Y4C8 960 aaKnown RBP23.36■■□□□ 1.33
HMGB3-205ENST00000455596 PLA2G4BP0C869 781 aa23.35■■□□□ 1.33
HMGB3-205ENST00000455596 SLC12A3P55017 1021 aa23.35■■□□□ 1.33
HMGB3-205ENST00000455596 TPRNQ4KMQ1 711 aa23.35■■□□□ 1.33
HMGB3-205ENST00000455596 SYCE2Q6PIF2 218 aa23.35■■□□□ 1.33
HMGB3-205ENST00000455596 SUSD6Q92537 303 aa23.35■■□□□ 1.33
HMGB3-205ENST00000455596 EMILIN2Q9BXX0 1053 aa23.35■■□□□ 1.33
HMGB3-205ENST00000455596 S1PR5Q9H228 398 aa23.35■■□□□ 1.33
HMGB3-205ENST00000455596 MRPL17Q9NRX2 175 aaKnown RBP23.35■■□□□ 1.33
HMGB3-205ENST00000455596 ARHGAP28Q9P2N2 729 aa23.35■■□□□ 1.33
HMGB3-205ENST00000455596 KCNG1Q9UIX4 513 aa23.35■■□□□ 1.33
HMGB3-205ENST00000455596 TNFSF13BQ9Y275 285 aa23.35■■□□□ 1.33
HMGB3-205ENST00000455596 SSX2IPQ9Y2D8 614 aa23.35■■□□□ 1.33
HMGB3-205ENST00000455596 BDP1A6H8Y1 2624 aa23.35■■□□□ 1.33
HMGB3-205ENST00000455596 MTCL1Q9Y4B5 1905 aaKnown RBP23.35■■□□□ 1.33
HMGB3-205ENST00000455596 SFI1A8K8P3 1242 aa23.34■■□□□ 1.33
HMGB3-205ENST00000455596 RECQL4O94761 1208 aa23.34■■□□□ 1.33
HMGB3-205ENST00000455596 URODP06132 367 aa23.34■■□□□ 1.33
HMGB3-205ENST00000455596 RAD51AP2Q09MP3 1159 aa23.34■■□□□ 1.33
HMGB3-205ENST00000455596 PPFIBP1Q86W92 1011 aa23.34■■□□□ 1.33
HMGB3-205ENST00000455596 APOL5Q9BWW9 433 aa23.34■■□□□ 1.33
HMGB3-205ENST00000455596 PHF7Q9BWX1 381 aaPredicted RBP23.34■■□□□ 1.33
HMGB3-205ENST00000455596 FOXD4L1Q9NU39 408 aa23.34■■□□□ 1.33
HMGB3-205ENST00000455596 PDCD11Q14690 1871 aaKnown RBP23.34■■□□□ 1.33
HMGB3-205ENST00000455596 SLC16A4O15374 487 aa23.33■■□□□ 1.33
HMGB3-205ENST00000455596 THP07101 528 aa23.33■■□□□ 1.33
HMGB3-205ENST00000455596 ALADP13716 330 aa23.33■■□□□ 1.33
HMGB3-205ENST00000455596 GRIN1Q05586 938 aa23.33■■□□□ 1.33
HMGB3-205ENST00000455596 RESTQ13127 1097 aa23.33■■□□□ 1.33
HMGB3-205ENST00000455596 TUSC3Q13454 348 aa23.33■■□□□ 1.33
HMGB3-205ENST00000455596 RNF168Q8IYW5 571 aaPredicted RBP23.33■■□□□ 1.33
HMGB3-205ENST00000455596 RASSF8Q8NHQ8 419 aa23.33■■□□□ 1.33
HMGB3-205ENST00000455596 SLC22A17Q8WUG5 538 aa23.33■■□□□ 1.33
HMGB3-205ENST00000455596 KLHL5Q96PQ7 755 aa23.33■■□□□ 1.33
HMGB3-205ENST00000455596 ACO2Q99798 780 aaKnown RBP23.33■■□□□ 1.33
HMGB3-205ENST00000455596 NTPCRQ9BSD7 190 aaKnown RBP23.33■■□□□ 1.33
HMGB3-205ENST00000455596 MRPL4Q9BYD3 311 aaKnown RBP23.33■■□□□ 1.33
HMGB3-205ENST00000455596 DZANK1Q9NVP4 752 aa23.33■■□□□ 1.33
HMGB3-205ENST00000455596 GDAQ9Y2T3 454 aa23.33■■□□□ 1.33
HMGB3-205ENST00000455596 PTGESO14684 152 aa23.32■■□□□ 1.32
HMGB3-205ENST00000455596 EFEMP2O95967 443 aa23.32■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms