RNA–Protein interactions for RNA: ENST00000433297.2

HMGCS1-202, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HMGCS1, Length 3,466 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-202ENST00000433297 CCDC88AQ3V6T2 1871 aa12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 PDXKO00764 312 aa12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 ATP9AO75110 1047 aa12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 HSPA6P17066 643 aa12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 KRT15P19012 456 aa12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 CTNNA2P26232 953 aa12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 SKIV2L2P42285 1042 aaKnown RBP12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 RBM5P52756 815 aaKnown RBP eCLIP12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 MKRN3Q13064 507 aaKnown RBP12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 ORC2Q13416 577 aaPredicted RBP12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 SMIM5Q71RC9 77 aa12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 PHLDB2Q86SQ0 1253 aa12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 CCNJLQ8IV13 435 aa12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.35□□□□□ -0.432e-10■■■■□ 25.6
HMGCS1-202ENST00000433297 EPAS1Q99814 870 aa12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 RUSC1Q9BVN2 902 aa12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 DNAJC18Q9H819 358 aa12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 PSTPIP2Q9H939 334 aa12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 ZNF287Q9HBT7 754 aa12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 ACP6Q9NPH0 428 aa12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 AAASQ9NRG9 546 aa12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 WDR35Q9P2L0 1181 aa12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 PCDHA3Q9Y5H8 950 aa12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 NCANO14594 1321 aa12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 MIF4GDA9UHW6 222 aaKnown RBP12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 NPTXRO95502 500 aa12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 ZCCHC18P0CG32 403 aa12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 CHRNB2P17787 502 aa12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 KCNA3P22001 575 aa12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 NMT1P30419 496 aaKnown RBP12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 CRKLP46109 303 aaKnown RBP12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 RASSF2P50749 326 aa12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 SLC12A3P55017 1021 aa12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 RCN1Q15293 331 aa12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 CLUL1Q15846 466 aa12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 PARP6Q2NL67 630 aa12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 PRR16Q569H4 304 aa12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 RASIP1Q5U651 963 aa12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 SNX30Q5VWJ9 437 aa12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 RHOT2Q8IXI1 618 aa12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 SCG3Q8WXD2 468 aaKnown RBP12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 EZH1Q92800 747 aaPredicted RBP12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 UBE2TQ9NPD8 197 aaPredicted RBP12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 TYW1Q9NV66 732 aaKnown RBP12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 ANAPC5Q9UJX4 755 aa12.35□□□□□ -0.43
HMGCS1-202ENST00000433297 ATP5HO75947 161 aa12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 UBTFL6P0CB48 400 aaPredicted RBP12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 ANXA13P27216 316 aa12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 GCLCP48506 637 aaPredicted RBP12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 SERPINB4P48594 390 aa12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 FMO5P49326 533 aa12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 WDR4P57081 412 aaKnown RBP12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 PDCD2Q16342 344 aaPredicted RBP12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 PPP1R21Q6ZMI0 780 aa12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 CYFIP1Q7L576 1253 aa12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 MYCT1Q8N699 235 aa12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 KIFAP3Q92845 792 aa12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 AGPAT1Q99943 283 aa12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 CCDC77Q9BR77 488 aa12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 RGL1Q9NZL6 768 aa12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 STOML1Q9UBI4 398 aa12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 ASTN1O14525 1302 aa12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 PSMC2P35998 433 aaKnown RBP12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 GPC5P78333 572 aa12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 USP4Q13107 963 aa12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 SCYL3Q8IZE3 742 aa12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 ANKRD35Q8N283 1001 aa12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 GRAMD1AQ96CP6 724 aa12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 SLC7A6OSQ96CW6 309 aaPredicted RBP12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 ANKRD27Q96NW4 1050 aa12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 GBP5Q96PP8 586 aa12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 NPHS2Q9NP85 383 aa12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 UBN1Q9NPG3 1134 aa12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 CCDC87Q9NVE4 849 aa12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 ZFP69BQ9UJL9 534 aa12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 CACNA1SQ13698 1873 aa12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 FAM47DPA6NHR8 397 aa12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 RNF8O76064 485 aa12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 CACNA2D1P54289 1103 aa12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 CUL3Q13618 768 aa12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 SLC30A10Q6XR72 485 aa12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 DSTYKQ6XUX3 929 aa12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 MTDHQ86UE4 582 aaKnown RBP12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 MXD3Q9BW11 206 aa12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 INTS2Q9H0H0 1204 aaKnown RBP12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 CHST7Q9NS84 486 aa12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 SUGT1Q9Y2Z0 365 aa12.34□□□□□ -0.43
HMGCS1-202ENST00000433297 TRPM3Q9HCF6 1732 aaPredicted RBP12.33□□□□□ -0.44
HMGCS1-202ENST00000433297 KIF13AQ9H1H9 1805 aa12.33□□□□□ -0.44
HMGCS1-202ENST00000433297 ESYT2A0FGR8 921 aa12.33□□□□□ -0.44
HMGCS1-202ENST00000433297 CFAP69A5D8W1 941 aa12.33□□□□□ -0.44
HMGCS1-202ENST00000433297 CAPN9O14815 690 aa12.33□□□□□ -0.44
HMGCS1-202ENST00000433297 KRT36O76013 467 aa12.33□□□□□ -0.44
HMGCS1-202ENST00000433297 CAMTA2O94983 1202 aa12.33□□□□□ -0.44
HMGCS1-202ENST00000433297 T-ENOLP0DO92 83 aa12.33□□□□□ -0.44
HMGCS1-202ENST00000433297 SKIP12755 728 aa12.33□□□□□ -0.44
HMGCS1-202ENST00000433297 ACADSP16219 412 aa12.33□□□□□ -0.44
HMGCS1-202ENST00000433297 MARK3P27448 753 aa12.33□□□□□ -0.44
HMGCS1-202ENST00000433297 HOXA7P31268 230 aaPredicted RBP12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms