RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 GPT2Q8TD30 523 aa13.64□□□□□ -0.23
USP40-205ENST00000430158 HVCN1Q96D96 273 aa13.64□□□□□ -0.23
USP40-205ENST00000430158 ZBTB45Q96K62 511 aaPredicted RBP13.64□□□□□ -0.23
USP40-205ENST00000430158 MRPL4Q9BYD3 311 aaKnown RBP13.64□□□□□ -0.23
USP40-205ENST00000430158 PBX4Q9BYU1 374 aa13.64□□□□□ -0.23
USP40-205ENST00000430158 MRPL44Q9H9J2 332 aaKnown RBP13.64□□□□□ -0.23
USP40-205ENST00000430158 PCDHA11Q9Y5I1 949 aa13.64□□□□□ -0.23
USP40-205ENST00000430158 TRANK1O15050 2925 aa13.63□□□□□ -0.23
USP40-205ENST00000430158 ZMYM2Q9UBW7 1377 aa13.63□□□□□ -0.23
USP40-205ENST00000430158 LCHNA4D1U4 455 aa13.63□□□□□ -0.23
USP40-205ENST00000430158 TISP43B9A030 160 aa13.63□□□□□ -0.23
USP40-205ENST00000430158 ANKRD63C9JTQ0 380 aa13.63□□□□□ -0.23
USP40-205ENST00000430158 N4BP3O15049 544 aa13.63□□□□□ -0.23
USP40-205ENST00000430158 INPPL1O15357 1258 aa13.63□□□□□ -0.23
USP40-205ENST00000430158 MEFVO15553 781 aaPredicted RBP13.63□□□□□ -0.23
USP40-205ENST00000430158 FAM189A1O60320 539 aa13.63□□□□□ -0.23
USP40-205ENST00000430158 ADSSP30520 456 aa13.63□□□□□ -0.23
USP40-205ENST00000430158 GATMP50440 423 aa13.63□□□□□ -0.23
USP40-205ENST00000430158 RAB27AP51159 221 aa13.63□□□□□ -0.23
USP40-205ENST00000430158 KCNB1Q14721 858 aa13.63□□□□□ -0.23
USP40-205ENST00000430158 BMT2Q1RMZ1 405 aa13.63□□□□□ -0.23
USP40-205ENST00000430158 L1TD1Q5T7N2 865 aaKnown RBP13.63□□□□□ -0.23
USP40-205ENST00000430158 SCFD1Q8WVM8 642 aa13.63□□□□□ -0.23
USP40-205ENST00000430158 ERCC4Q92889 916 aaPredicted RBP13.63□□□□□ -0.23
USP40-205ENST00000430158 RAD9AQ99638 391 aa13.63□□□□□ -0.23
USP40-205ENST00000430158 CDT1Q9H211 546 aa13.63□□□□□ -0.23
USP40-205ENST00000430158 HES2Q9Y543 173 aa13.63□□□□□ -0.23
USP40-205ENST00000430158 IPPQ9Y573 584 aa13.63□□□□□ -0.23
USP40-205ENST00000430158 PCDHA5Q9Y5H7 936 aa13.63□□□□□ -0.23
USP40-205ENST00000430158 KIAA1671Q9BY89 1806 aa13.62□□□□□ -0.23
USP40-205ENST00000430158 ANK1P16157 1881 aa13.62□□□□□ -0.23
USP40-205ENST00000430158 EIF3DO15371 548 aaKnown RBP eCLIP13.62□□□□□ -0.23
USP40-205ENST00000430158 TOM1L1O75674 476 aa13.62□□□□□ -0.23
USP40-205ENST00000430158 PRPF6O94906 941 aaKnown RBP13.62□□□□□ -0.23
USP40-205ENST00000430158 UPP2O95045 317 aa13.62□□□□□ -0.23
USP40-205ENST00000430158 NPTXRO95502 500 aa13.62□□□□□ -0.23
USP40-205ENST00000430158 FGFR1P11362 822 aa13.62□□□□□ -0.23
USP40-205ENST00000430158 ABCD1P33897 745 aa13.62□□□□□ -0.23
USP40-205ENST00000430158 MCM4P33991 863 aa13.62□□□□□ -0.23
USP40-205ENST00000430158 MCL1Q07820 350 aa13.62□□□□□ -0.23
USP40-205ENST00000430158 STRN3Q13033 797 aa13.62□□□□□ -0.23
USP40-205ENST00000430158 PSMD2Q13200 908 aa13.62□□□□□ -0.23
USP40-205ENST00000430158 ALCAMQ13740 583 aa13.62□□□□□ -0.23
USP40-205ENST00000430158 FAM117BQ6P1L5 589 aa13.62□□□□□ -0.23
USP40-205ENST00000430158 GSTCDQ8NEC7 633 aa13.62□□□□□ -0.23
USP40-205ENST00000430158 LPPQ93052 612 aa13.62□□□□□ -0.23
USP40-205ENST00000430158 CASD1Q96PB1 797 aa13.62□□□□□ -0.23
USP40-205ENST00000430158 CXCL16Q9H2A7 254 aa13.62□□□□□ -0.23
USP40-205ENST00000430158 NXF3Q9H4D5 531 aaKnown RBP13.62□□□□□ -0.23
USP40-205ENST00000430158 SLC39A2Q9NP94 309 aa13.62□□□□□ -0.23
USP40-205ENST00000430158 PCDHB7Q9Y5E2 793 aa13.62□□□□□ -0.23
USP40-205ENST00000430158 PDCD11Q14690 1871 aaKnown RBP13.61□□□□□ -0.23
USP40-205ENST00000430158 A0A0B4J269 797 aa13.61□□□□□ -0.23
USP40-205ENST00000430158 TGFB1I1O43294 461 aa13.61□□□□□ -0.23
USP40-205ENST00000430158 KINO60870 393 aaKnown RBP13.61□□□□□ -0.23
USP40-205ENST00000430158 OFD1O75665 1012 aa13.61□□□□□ -0.23
USP40-205ENST00000430158 GCNT3O95395 438 aa13.61□□□□□ -0.23
USP40-205ENST00000430158 STAG3L1P0CL83 205 aa13.61□□□□□ -0.23
USP40-205ENST00000430158 MCF2P10911 925 aa13.61□□□□□ -0.23
USP40-205ENST00000430158 SKIP12755 728 aa13.61□□□□□ -0.23
USP40-205ENST00000430158 BMP6P22004 513 aa13.61□□□□□ -0.23
USP40-205ENST00000430158 AFF1P51825 1210 aaKnown RBP13.61□□□□□ -0.23
USP40-205ENST00000430158 NCBP1Q09161 790 aaKnown RBP13.61□□□□□ -0.23
USP40-205ENST00000430158 MPZL3Q6UWV2 235 aa13.61□□□□□ -0.23
USP40-205ENST00000430158 LRRC55Q6ZSA7 311 aa13.61□□□□□ -0.23
USP40-205ENST00000430158 SPRED2Q7Z698 418 aa13.61□□□□□ -0.23
USP40-205ENST00000430158 TMEM192Q8IY95 271 aa13.61□□□□□ -0.23
USP40-205ENST00000430158 CEP120Q8N960 986 aa13.61□□□□□ -0.23
USP40-205ENST00000430158 GSDMAQ96QA5 445 aa13.61□□□□□ -0.23
USP40-205ENST00000430158 ACCSQ96QU6 501 aa13.61□□□□□ -0.23
USP40-205ENST00000430158 INSL6Q9Y581 213 aa13.61□□□□□ -0.23
USP40-205ENST00000430158 NLRC5Q86WI3 1866 aa13.61□□□□□ -0.23
USP40-205ENST00000430158 TDRD15B5MCY1 1934 aaKnown RBP13.6□□□□□ -0.23
USP40-205ENST00000430158 TLL1O43897 1013 aa13.6□□□□□ -0.23
USP40-205ENST00000430158 DNAJB2P25686 324 aa13.6□□□□□ -0.23
USP40-205ENST00000430158 RAB30Q15771 203 aa13.6□□□□□ -0.23
USP40-205ENST00000430158 DCAF4L1Q3SXM0 396 aa13.6□□□□□ -0.23
USP40-205ENST00000430158 XKR4Q5GH76 650 aa13.6□□□□□ -0.23
USP40-205ENST00000430158 ALKAL1Q6UXT8 129 aa13.6□□□□□ -0.23
USP40-205ENST00000430158 CMTR2Q8IYT2 770 aaKnown RBP13.6□□□□□ -0.23
USP40-205ENST00000430158 LRCH3Q96II8 777 aa13.6□□□□□ -0.23
USP40-205ENST00000430158 TMEM117Q9H0C3 514 aa13.6□□□□□ -0.23
USP40-205ENST00000430158 KCTD10Q9H3F6 313 aa13.6□□□□□ -0.23
USP40-205ENST00000430158 CLSTN2Q9H4D0 955 aa13.6□□□□□ -0.23
USP40-205ENST00000430158 EXOC1Q9NV70 894 aa13.6□□□□□ -0.23
USP40-205ENST00000430158 MIOSQ9NXC5 875 aa13.6□□□□□ -0.23
USP40-205ENST00000430158 GDAQ9Y2T3 454 aa13.6□□□□□ -0.23
USP40-205ENST00000430158 UBE4BO95155 1302 aa13.6□□□□□ -0.23
USP40-205ENST00000430158 RALGAPA2Q2PPJ7 1873 aa13.59□□□□□ -0.23
USP40-205ENST00000430158 LINC01553A4QN01 128 aa13.59□□□□□ -0.23
USP40-205ENST00000430158 HNRNPDLO14979 420 aaKnown RBP13.59□□□□□ -0.23
USP40-205ENST00000430158 B4GALT3O60512 393 aa13.59□□□□□ -0.23
USP40-205ENST00000430158 CA3P07451 260 aa13.59□□□□□ -0.23
USP40-205ENST00000430158 ADRB2P07550 413 aa13.59□□□□□ -0.23
USP40-205ENST00000430158 GRM5P41594 1212 aa13.59□□□□□ -0.23
USP40-205ENST00000430158 LIG4P49917 911 aa13.59□□□□□ -0.23
USP40-205ENST00000430158 FXR1P51114 621 aaKnown RBP eCLIP13.59□□□□□ -0.23
USP40-205ENST00000430158 TAP1Q03518 808 aa13.59□□□□□ -0.23
USP40-205ENST00000430158 NOLC1Q14978 699 aaKnown RBP eCLIP13.59□□□□□ -0.23
USP40-205ENST00000430158 ZNF568Q3ZCX4 644 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms