RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 PRRT2Q7Z6L0 340 aaPredicted RBP7.53□□□□□ -1.2
CCDC88A-206ENST00000430086 THEMISQ8N1K5 641 aaPredicted RBP7.53□□□□□ -1.2
CCDC88A-206ENST00000430086 ZNF808Q8N4W9 903 aaPredicted RBP7.53□□□□□ -1.2
CCDC88A-206ENST00000430086 PPM1NQ8N819 430 aa7.53□□□□□ -1.2
CCDC88A-206ENST00000430086 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.53□□□□□ -1.2
CCDC88A-206ENST00000430086 MIEF2Q96C03 454 aa7.53□□□□□ -1.2
CCDC88A-206ENST00000430086 CDK5RAP1Q96SZ6 601 aaKnown RBP7.53□□□□□ -1.2
CCDC88A-206ENST00000430086 PDCD2LQ9BRP1 358 aa7.53□□□□□ -1.2
CCDC88A-206ENST00000430086 DNM3Q9UQ16 869 aa7.53□□□□□ -1.2
CCDC88A-206ENST00000430086 SLC16A1P53985 500 aa7.52□□□□□ -1.21
CCDC88A-206ENST00000430086 APBA1Q02410 837 aa7.52□□□□□ -1.21
CCDC88A-206ENST00000430086 SEPT2Q15019 361 aa7.52□□□□□ -1.21
CCDC88A-206ENST00000430086 ELAVL1Q15717 326 aaKnown RBP7.52□□□□□ -1.21
CCDC88A-206ENST00000430086 SPTY2D1Q68D10 685 aaPredicted RBP7.52□□□□□ -1.21
CCDC88A-206ENST00000430086 SGMS1Q86VZ5 419 aa7.52□□□□□ -1.21
CCDC88A-206ENST00000430086 NRG4Q8WWG1 115 aa7.52□□□□□ -1.21
CCDC88A-206ENST00000430086 ADOQ96SZ5 270 aa7.52□□□□□ -1.21
CCDC88A-206ENST00000430086 TCF7L1Q9HCS4 588 aa7.52□□□□□ -1.21
CCDC88A-206ENST00000430086 SAP30BPQ9UHR5 308 aaKnown RBP7.52□□□□□ -1.21
CCDC88A-206ENST00000430086 MUSKO15146 869 aa7.51□□□□□ -1.21
CCDC88A-206ENST00000430086 CYP27B1O15528 508 aa7.51□□□□□ -1.21
CCDC88A-206ENST00000430086 MFAP3LO75121 409 aa7.51□□□□□ -1.21
CCDC88A-206ENST00000430086 IPO13O94829 963 aaKnown RBP7.51□□□□□ -1.21
CCDC88A-206ENST00000430086 SNUPNO95149 360 aaKnown RBP7.51□□□□□ -1.21
CCDC88A-206ENST00000430086 SREBF1P36956 1147 aa7.51□□□□□ -1.21
CCDC88A-206ENST00000430086 ADKP55263 362 aaKnown RBP7.51□□□□□ -1.21
CCDC88A-206ENST00000430086 PRKD1Q15139 912 aaPredicted RBP7.51□□□□□ -1.21
CCDC88A-206ENST00000430086 TTF1Q15361 905 aaPredicted RBP7.51□□□□□ -1.21
CCDC88A-206ENST00000430086 FAM214AQ32MH5 1076 aa7.51□□□□□ -1.21
CCDC88A-206ENST00000430086 METTL24Q5JXM2 366 aa7.51□□□□□ -1.21
CCDC88A-206ENST00000430086 PRAMEF14Q5SWL7 426 aa7.51□□□□□ -1.21
CCDC88A-206ENST00000430086 DOK3Q7L591 496 aa7.51□□□□□ -1.21
CCDC88A-206ENST00000430086 TRMT2AQ8IZ69 625 aaKnown RBP7.51□□□□□ -1.21
CCDC88A-206ENST00000430086 MDGA1Q8NFP4 955 aa7.51□□□□□ -1.21
CCDC88A-206ENST00000430086 OR2I1PQ8NGU4 316 aa7.51□□□□□ -1.21
CCDC88A-206ENST00000430086 TSC22D4Q9Y3Q8 395 aa7.51□□□□□ -1.21
CCDC88A-206ENST00000430086 ZMYM3Q14202 1370 aa7.5□□□□□ -1.21
CCDC88A-206ENST00000430086 CAPN14A8MX76 684 aa7.5□□□□□ -1.21
CCDC88A-206ENST00000430086 ADCY6O43306 1168 aa7.5□□□□□ -1.21
CCDC88A-206ENST00000430086 GNAT2P19087 354 aa7.5□□□□□ -1.21
CCDC88A-206ENST00000430086 MCL1Q07820 350 aa7.5□□□□□ -1.21
CCDC88A-206ENST00000430086 CDSNQ15517 529 aa7.5□□□□□ -1.21
CCDC88A-206ENST00000430086 PLEKHG6Q3KR16 790 aa7.5□□□□□ -1.21
CCDC88A-206ENST00000430086 ZNF572Q7Z3I7 529 aaPredicted RBP7.5□□□□□ -1.21
CCDC88A-206ENST00000430086 CMTR2Q8IYT2 770 aaKnown RBP7.5□□□□□ -1.21
CCDC88A-206ENST00000430086 CPA6Q8N4T0 437 aa7.5□□□□□ -1.21
CCDC88A-206ENST00000430086 MDM1Q8TC05 714 aa7.5□□□□□ -1.21
CCDC88A-206ENST00000430086 ST8SIA2Q92186 375 aa7.5□□□□□ -1.21
CCDC88A-206ENST00000430086 COA7Q96BR5 231 aa7.5□□□□□ -1.21
CCDC88A-206ENST00000430086 CYFIP2Q96F07 1278 aa7.5□□□□□ -1.21
CCDC88A-206ENST00000430086 INTUQ9ULD6 942 aa7.5□□□□□ -1.21
CCDC88A-206ENST00000430086 SIK3Q9Y2K2 1263 aa7.5□□□□□ -1.21
CCDC88A-206ENST00000430086 C1QTNF3-AMACRE9PGA6 284 aa7.49□□□□□ -1.21
CCDC88A-206ENST00000430086 ZRANB2O95218 330 aaKnown RBP eCLIP7.49□□□□□ -1.21
CCDC88A-206ENST00000430086 ADRB1P08588 477 aa7.49□□□□□ -1.21
CCDC88A-206ENST00000430086 HIBADHP31937 336 aaKnown RBP7.49□□□□□ -1.21
CCDC88A-206ENST00000430086 GUCY1A2P33402 732 aa7.49□□□□□ -1.21
CCDC88A-206ENST00000430086 SLC6A9P48067 706 aa7.49□□□□□ -1.21
CCDC88A-206ENST00000430086 FLT3LGP49771 235 aa7.49□□□□□ -1.21
CCDC88A-206ENST00000430086 SP140Q13342 867 aa7.49□□□□□ -1.21
CCDC88A-206ENST00000430086 FAM47AQ5JRC9 791 aa7.49□□□□□ -1.21
CCDC88A-206ENST00000430086 FAM83AQ86UY5 434 aa7.49□□□□□ -1.21
CCDC88A-206ENST00000430086 ELOA2Q8IYF1 753 aaPredicted RBP7.49□□□□□ -1.21
CCDC88A-206ENST00000430086 PQLC1Q8N2U9 271 aa7.49□□□□□ -1.21
CCDC88A-206ENST00000430086 DPF2Q92785 391 aa7.49□□□□□ -1.21
CCDC88A-206ENST00000430086 HOOK2Q96ED9 719 aa7.49□□□□□ -1.21
CCDC88A-206ENST00000430086 C7orf25Q9BPX7 421 aa7.49□□□□□ -1.21
CCDC88A-206ENST00000430086 EPC1Q9H2F5 836 aa7.49□□□□□ -1.21
CCDC88A-206ENST00000430086 AASDHPPTQ9NRN7 309 aa7.49□□□□□ -1.21
CCDC88A-206ENST00000430086 LANCL2Q9NS86 450 aa7.49□□□□□ -1.21
CCDC88A-206ENST00000430086 LUC7L2Q9Y383 392 aaKnown RBP7.49□□□□□ -1.21
CCDC88A-206ENST00000430086 IPPQ9Y573 584 aa7.49□□□□□ -1.21
CCDC88A-206ENST00000430086 ATRNL1Q5VV63 1379 aa7.48□□□□□ -1.21
CCDC88A-206ENST00000430086 E2F8A0AVK6 867 aa7.48□□□□□ -1.21
CCDC88A-206ENST00000430086 KRTAP23-1A1A580 65 aa7.48□□□□□ -1.21
CCDC88A-206ENST00000430086 B5MCH6 92 aa7.48□□□□□ -1.21
CCDC88A-206ENST00000430086 HTRA2O43464 458 aaPredicted RBP7.48□□□□□ -1.21
CCDC88A-206ENST00000430086 PTPN7P35236 360 aa7.48□□□□□ -1.21
CCDC88A-206ENST00000430086 RABGGTBP53611 331 aa7.48□□□□□ -1.21
CCDC88A-206ENST00000430086 EPHB1P54762 984 aa7.48□□□□□ -1.21
CCDC88A-206ENST00000430086 PER3P56645 1201 aa7.48□□□□□ -1.21
CCDC88A-206ENST00000430086 KIF23Q02241 960 aaPredicted RBP7.48□□□□□ -1.21
CCDC88A-206ENST00000430086 DCAF17Q5H9S7 520 aaPredicted RBP7.48□□□□□ -1.21
CCDC88A-206ENST00000430086 MFSD14BQ5SR56 506 aa7.48□□□□□ -1.21
CCDC88A-206ENST00000430086 HTR3DQ70Z44 454 aa7.48□□□□□ -1.21
CCDC88A-206ENST00000430086 GPRIN1Q7Z2K8 1008 aa7.48□□□□□ -1.21
CCDC88A-206ENST00000430086 GSPT2Q8IYD1 628 aaKnown RBP7.48□□□□□ -1.21
CCDC88A-206ENST00000430086 REPS2Q8NFH8 660 aa7.48□□□□□ -1.21
CCDC88A-206ENST00000430086 HDAC10Q969S8 669 aa7.48□□□□□ -1.21
CCDC88A-206ENST00000430086 CEP95Q96GE4 821 aa7.48□□□□□ -1.21
CCDC88A-206ENST00000430086 UHRF1Q96T88 793 aaPredicted RBP7.48□□□□□ -1.21
CCDC88A-206ENST00000430086 LSM14BQ9BX40 385 aaKnown RBP7.48□□□□□ -1.21
CCDC88A-206ENST00000430086 KCNH6Q9H252 994 aa7.48□□□□□ -1.21
CCDC88A-206ENST00000430086 MANSC1Q9H8J5 431 aa7.48□□□□□ -1.21
CCDC88A-206ENST00000430086 GIT1Q9Y2X7 761 aa7.48□□□□□ -1.21
CCDC88A-206ENST00000430086 ABLIM3O94929 683 aa7.47□□□□□ -1.21
CCDC88A-206ENST00000430086 IL2RBP14784 551 aa7.47□□□□□ -1.21
CCDC88A-206ENST00000430086 ALOX15P16050 662 aaPredicted RBP7.47□□□□□ -1.21
CCDC88A-206ENST00000430086 EDNRBP24530 442 aa7.47□□□□□ -1.21
CCDC88A-206ENST00000430086 ACRV1P26436 265 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms