RNA–Protein interactions for RNA: ENST00000426248.7

PKP4-205, Transcript of plakophilin 4, humanhuman

TSL 1 (best)

Gene PKP4, Length 4,134 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4-205ENST00000426248 PRMT1Q99873 361 aaKnown RBP17.11■□□□□ 0.33
PKP4-205ENST00000426248 PIDD1Q9HB75 910 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 ABCF3Q9NUQ8 709 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 GABBR1Q9UBS5 961 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 PCDHGC5Q9Y5F6 944 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 SPDYE5A6NIY4 337 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 K7ENM7 598 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 IGBP1P78318 339 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 ZBED6P86452 979 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 IFI16Q16666 785 aaKnown RBP17.11■□□□□ 0.33
PKP4-205ENST00000426248 SFR1Q86XK3 245 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 FAM81AQ8TBF8 368 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 PDCD2LQ9BRP1 358 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 TBC1D22BQ9NU19 505 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 TNS1Q9HBL0 1735 aaKnown RBP17.11■□□□□ 0.33
PKP4-205ENST00000426248 LGALS16A8MUM7 142 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 MYL1P05976 194 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 PBX1P40424 430 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 RFC5P40937 340 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 PPP1R2P41236 205 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 MTMR3Q13615 1198 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 CYFIP1Q7L576 1253 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 KCNK18Q7Z418 384 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 CCT6BQ92526 530 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 MTMR9Q96QG7 549 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 ETNK1Q9HBU6 452 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 GPBP1L1Q9HC44 474 aaPredicted RBP17.11■□□□□ 0.33
PKP4-205ENST00000426248 DOCK2Q92608 1830 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 NAV1Q8NEY1 1877 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 SARSP49591 514 aaKnown RBP17.11■□□□□ 0.33
PKP4-205ENST00000426248 PSMC6P62333 389 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 PPATQ06203 517 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 GFPT1Q06210 699 aaPredicted RBP17.11■□□□□ 0.33
PKP4-205ENST00000426248 TKFCQ3LXA3 575 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 PPP1R15BQ5SWA1 713 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 DAAM2Q86T65 1068 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 HOOK3Q86VS8 718 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 ZC3H15Q8WU90 426 aaKnown RBP17.11■□□□□ 0.33
PKP4-205ENST00000426248 ATP6V0A1Q93050 837 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 CAPN11Q9UMQ6 739 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 SNCAIPQ9Y6H5 919 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 DCDC2CA8MYV0 355 aa17.1■□□□□ 0.33
PKP4-205ENST00000426248 WDR64B1ANS9 1081 aa17.1■□□□□ 0.33
PKP4-205ENST00000426248 COASYQ13057 564 aa17.1■□□□□ 0.33
PKP4-205ENST00000426248 CCDC155Q8N6L0 562 aa17.1■□□□□ 0.33
PKP4-205ENST00000426248 DRAXINQ8NBI3 349 aaPredicted RBP17.1■□□□□ 0.33
PKP4-205ENST00000426248 CCDC97Q96F63 343 aaPredicted RBP17.1■□□□□ 0.33
PKP4-205ENST00000426248 SPATC1LQ9H0A9 340 aa17.1■□□□□ 0.33
PKP4-205ENST00000426248 DDX47Q9H0S4 455 aaKnown RBP17.1■□□□□ 0.33
PKP4-205ENST00000426248 CCDC160A6NGH7 325 aa17.1■□□□□ 0.33
PKP4-205ENST00000426248 TBX3O15119 743 aa17.1■□□□□ 0.33
PKP4-205ENST00000426248 DKC1O60832 514 aaKnown RBP eCLIP17.1■□□□□ 0.331e-14■□□□□ 9.4
PKP4-205ENST00000426248 PALMO75781 387 aa17.1■□□□□ 0.33
PKP4-205ENST00000426248 LINGO3P0C6S8 592 aa17.1■□□□□ 0.33
PKP4-205ENST00000426248 RPL13P26373 211 aaKnown RBP17.1■□□□□ 0.33
PKP4-205ENST00000426248 KLC1Q07866 573 aa17.1■□□□□ 0.33
PKP4-205ENST00000426248 BLMHQ13867 455 aa17.1■□□□□ 0.33
PKP4-205ENST00000426248 NUGGCQ68CJ6 796 aa17.1■□□□□ 0.33
PKP4-205ENST00000426248 METTL13Q8N6R0 699 aa17.1■□□□□ 0.33
PKP4-205ENST00000426248 EBF2Q9HAK2 575 aa17.1■□□□□ 0.33
PKP4-205ENST00000426248 SPDYE16A6NNV3 312 aaPredicted RBP17.1■□□□□ 0.33
PKP4-205ENST00000426248 FESP07332 822 aa17.1■□□□□ 0.33
PKP4-205ENST00000426248 QARSP47897 775 aaKnown RBP17.1■□□□□ 0.33
PKP4-205ENST00000426248 ADAM9Q13443 819 aa17.1■□□□□ 0.33
PKP4-205ENST00000426248 CRELD2Q6UXH1 353 aaPredicted RBP17.1■□□□□ 0.33
PKP4-205ENST00000426248 ZC3H18Q86VM9 953 aaKnown RBP17.1■□□□□ 0.33
PKP4-205ENST00000426248 MTMR8Q96EF0 704 aa17.1■□□□□ 0.33
PKP4-205ENST00000426248 RPS6KC1Q96S38 1066 aa17.1■□□□□ 0.33
PKP4-205ENST00000426248 GGA2Q9UJY4 613 aa17.1■□□□□ 0.33
PKP4-205ENST00000426248 ZBTB39O15060 712 aa17.09■□□□□ 0.33
PKP4-205ENST00000426248 EXOC3O60645 756 aa17.09■□□□□ 0.33
PKP4-205ENST00000426248 SUN1O94901 812 aa17.09■□□□□ 0.33
PKP4-205ENST00000426248 CCNE1P24864 410 aa17.09■□□□□ 0.33
PKP4-205ENST00000426248 NOVP48745 357 aa17.09■□□□□ 0.33
PKP4-205ENST00000426248 RPS6KA1Q15418 735 aa17.09■□□□□ 0.33
PKP4-205ENST00000426248 ARHGEF2Q92974 986 aaKnown RBP17.09■□□□□ 0.33
PKP4-205ENST00000426248 DHTKD1Q96HY7 919 aaPredicted RBP17.09■□□□□ 0.33
PKP4-205ENST00000426248 CNOT6LQ96LI5 555 aaKnown RBP17.09■□□□□ 0.33
PKP4-205ENST00000426248 CNOT8Q9UFF9 292 aaKnown RBP17.09■□□□□ 0.33
PKP4-205ENST00000426248 KRIT1O00522 736 aa17.09■□□□□ 0.33
PKP4-205ENST00000426248 POLGP54098 1239 aaPredicted RBP17.09■□□□□ 0.33
PKP4-205ENST00000426248 RNF220Q5VTB9 566 aa17.09■□□□□ 0.33
PKP4-205ENST00000426248 PADI6Q6TGC4 694 aa17.09■□□□□ 0.33
PKP4-205ENST00000426248 APTXQ7Z2E3 356 aaKnown RBP17.09■□□□□ 0.33
PKP4-205ENST00000426248 GORASP1Q9BQQ3 440 aa17.09■□□□□ 0.33
PKP4-205ENST00000426248 UNC45AQ9H3U1 944 aa17.09■□□□□ 0.33
PKP4-205ENST00000426248 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.09■□□□□ 0.331e-6■■■□□ 18.3
PKP4-205ENST00000426248 EML1O00423 815 aa17.09■□□□□ 0.33
PKP4-205ENST00000426248 DAPK3O43293 454 aa17.09■□□□□ 0.33
PKP4-205ENST00000426248 P4HBP07237 508 aaKnown RBP17.09■□□□□ 0.33
PKP4-205ENST00000426248 RPA1P27694 616 aa17.09■□□□□ 0.33
PKP4-205ENST00000426248 MSH2P43246 934 aa17.09■□□□□ 0.33
PKP4-205ENST00000426248 M0R2N6 131 aa17.08■□□□□ 0.33
PKP4-205ENST00000426248 CXCL11O14625 94 aa17.08■□□□□ 0.33
PKP4-205ENST00000426248 ACBD5Q5T8D3 534 aaPredicted RBP17.08■□□□□ 0.33
PKP4-205ENST00000426248 WDR59Q6PJI9 974 aa17.08■□□□□ 0.33
PKP4-205ENST00000426248 PNMA5Q96PV4 448 aa17.08■□□□□ 0.33
PKP4-205ENST00000426248 PARVGQ9HBI0 331 aa17.08■□□□□ 0.33
PKP4-205ENST00000426248 PXMP2Q9NR77 195 aa17.08■□□□□ 0.33
PKP4-205ENST00000426248 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.08■□□□□ 0.333e-13■■■■□ 21.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms