RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 ZNF720Q7Z2F6 126 aa16.04■□□□□ 0.16
LIMS1-206ENST00000414829 TMEM87AQ8NBN3 555 aa16.04■□□□□ 0.16
LIMS1-206ENST00000414829 SMG8Q8ND04 991 aaKnown RBP16.04■□□□□ 0.16
LIMS1-206ENST00000414829 CHAMP1Q96JM3 812 aa16.04■□□□□ 0.16
LIMS1-206ENST00000414829 ZNF558Q96NG5 402 aa16.04■□□□□ 0.16
LIMS1-206ENST00000414829 FAM193BQ96PV7 902 aaPredicted RBP16.04■□□□□ 0.16
LIMS1-206ENST00000414829 CDX2Q99626 313 aaPredicted RBP16.04■□□□□ 0.16
LIMS1-206ENST00000414829 TARS2Q9BW92 718 aaKnown RBP16.04■□□□□ 0.16
LIMS1-206ENST00000414829 PRDM12Q9H4Q4 367 aa16.04■□□□□ 0.16
LIMS1-206ENST00000414829 TMEM206Q9H813 350 aa16.04■□□□□ 0.16
LIMS1-206ENST00000414829 RNF19AQ9NV58 838 aa16.04■□□□□ 0.16
LIMS1-206ENST00000414829 ANKFY1Q9P2R3 1169 aa16.04■□□□□ 0.16
LIMS1-206ENST00000414829 INPP5FQ9Y2H2 1132 aa16.04■□□□□ 0.16
LIMS1-206ENST00000414829 STXBP5LQ9Y2K9 1186 aa16.04■□□□□ 0.16
LIMS1-206ENST00000414829 H3BNC9 293 aa16.03■□□□□ 0.16
LIMS1-206ENST00000414829 EIF3DO15371 548 aaKnown RBP eCLIP16.03■□□□□ 0.16
LIMS1-206ENST00000414829 OFD1O75665 1012 aa16.03■□□□□ 0.16
LIMS1-206ENST00000414829 PROZP22891 400 aa16.03■□□□□ 0.16
LIMS1-206ENST00000414829 GRM5P41594 1212 aa16.03■□□□□ 0.16
LIMS1-206ENST00000414829 MATR3P43243 847 aaKnown RBP eCLIP16.03■□□□□ 0.16
LIMS1-206ENST00000414829 UBE3AQ05086 875 aa16.03■□□□□ 0.16
LIMS1-206ENST00000414829 FAM160A1Q05DH4 1040 aa16.03■□□□□ 0.16
LIMS1-206ENST00000414829 MCL1Q07820 350 aa16.03■□□□□ 0.16
LIMS1-206ENST00000414829 GRIK3Q13003 919 aa16.03■□□□□ 0.16
LIMS1-206ENST00000414829 POSTNQ15063 836 aa16.03■□□□□ 0.16
LIMS1-206ENST00000414829 FAM26FQ5R3K3 315 aa16.03■□□□□ 0.16
LIMS1-206ENST00000414829 LPPQ93052 612 aa16.03■□□□□ 0.16
LIMS1-206ENST00000414829 GUCD1Q96NT3 240 aa16.03■□□□□ 0.16
LIMS1-206ENST00000414829 ACCSQ96QU6 501 aa16.03■□□□□ 0.16
LIMS1-206ENST00000414829 FIZ1Q96SL8 496 aa16.03■□□□□ 0.16
LIMS1-206ENST00000414829 C17orf80Q9BSJ5 609 aa16.03■□□□□ 0.16
LIMS1-206ENST00000414829 APOL6Q9BWW8 343 aa16.03■□□□□ 0.16
LIMS1-206ENST00000414829 CDT1Q9H211 546 aa16.03■□□□□ 0.16
LIMS1-206ENST00000414829 PTPRHQ9HD43 1115 aa16.03■□□□□ 0.16
LIMS1-206ENST00000414829 TYW1Q9NV66 732 aaKnown RBP16.03■□□□□ 0.16
LIMS1-206ENST00000414829 EXOC1Q9NV70 894 aa16.03■□□□□ 0.16
LIMS1-206ENST00000414829 PARP2Q9UGN5 583 aa16.03■□□□□ 0.16
LIMS1-206ENST00000414829 SERTAD1Q9UHV2 236 aa16.03■□□□□ 0.16
LIMS1-206ENST00000414829 MTUS1Q9ULD2 1270 aa16.03■□□□□ 0.16
LIMS1-206ENST00000414829 ARL5CA6NH57 179 aa16.02■□□□□ 0.16
LIMS1-206ENST00000414829 ARHGEF15O94989 841 aa16.02■□□□□ 0.16
LIMS1-206ENST00000414829 KIF20AO95235 890 aa16.02■□□□□ 0.16
LIMS1-206ENST00000414829 MLH1P40692 756 aa16.02■□□□□ 0.16
LIMS1-206ENST00000414829 AFMP43652 599 aa16.02■□□□□ 0.16
LIMS1-206ENST00000414829 GATMP50440 423 aa16.02■□□□□ 0.16
LIMS1-206ENST00000414829 KRT17Q04695 432 aa16.02■□□□□ 0.16
LIMS1-206ENST00000414829 BMS1Q14692 1282 aaKnown RBP16.02■□□□□ 0.16
LIMS1-206ENST00000414829 TIGD5Q53EQ6 642 aa16.02■□□□□ 0.16
LIMS1-206ENST00000414829 L1TD1Q5T7N2 865 aaKnown RBP16.02■□□□□ 0.16
LIMS1-206ENST00000414829 KRBA2Q6ZNG9 492 aa16.02■□□□□ 0.16
LIMS1-206ENST00000414829 THNSL1Q8IYQ7 743 aa16.02■□□□□ 0.16
LIMS1-206ENST00000414829 COLGALT1Q8NBJ5 622 aa16.02■□□□□ 0.16
LIMS1-206ENST00000414829 PPP2R3CQ969Q6 453 aa16.02■□□□□ 0.16
LIMS1-206ENST00000414829 PAGE5Q96GU1 130 aa16.02■□□□□ 0.16
LIMS1-206ENST00000414829 TMEM175Q9BSA9 504 aa16.02■□□□□ 0.16
LIMS1-206ENST00000414829 GTPBP4Q9BZE4 634 aaKnown RBP16.02■□□□□ 0.16
LIMS1-206ENST00000414829 TSHZ2Q9NRE2 1034 aa16.02■□□□□ 0.16
LIMS1-206ENST00000414829 TBC1D13Q9NVG8 400 aa16.02■□□□□ 0.16
LIMS1-206ENST00000414829 PUF60Q9UHX1 559 aaKnown RBP16.02■□□□□ 0.16
LIMS1-206ENST00000414829 PPP1R37O75864 691 aa16.01■□□□□ 0.15
LIMS1-206ENST00000414829 RECQL4O94761 1208 aa16.01■□□□□ 0.15
LIMS1-206ENST00000414829 ZNF202O95125 648 aa16.01■□□□□ 0.15
LIMS1-206ENST00000414829 POU3F3P20264 500 aaPredicted RBP16.01■□□□□ 0.15
LIMS1-206ENST00000414829 NMT1P30419 496 aaKnown RBP16.01■□□□□ 0.15
LIMS1-206ENST00000414829 GPM6BQ13491 265 aa16.01■□□□□ 0.15
LIMS1-206ENST00000414829 LONRF3Q496Y0 759 aa16.01■□□□□ 0.15
LIMS1-206ENST00000414829 EEF1DP3Q658K8 133 aa16.01■□□□□ 0.15
LIMS1-206ENST00000414829 CDR2LQ86X02 465 aaPredicted RBP16.01■□□□□ 0.15
LIMS1-206ENST00000414829 SYCP3Q8IZU3 236 aa16.01■□□□□ 0.15
LIMS1-206ENST00000414829 STAMQ92783 540 aa16.01■□□□□ 0.15
LIMS1-206ENST00000414829 ACAP3Q96P50 834 aa16.01■□□□□ 0.15
LIMS1-206ENST00000414829 GBP4Q96PP9 640 aa16.01■□□□□ 0.15
LIMS1-206ENST00000414829 TSPAN18Q96SJ8 248 aa16.01■□□□□ 0.15
LIMS1-206ENST00000414829 GAD1Q99259 594 aa16.01■□□□□ 0.15
LIMS1-206ENST00000414829 CERS4Q9HA82 394 aa16.01■□□□□ 0.15
LIMS1-206ENST00000414829 SLC38A7Q9NVC3 462 aa16.01■□□□□ 0.15
LIMS1-206ENST00000414829 SPG21Q9NZD8 308 aa16.01■□□□□ 0.15
LIMS1-206ENST00000414829 LZTS1Q9Y250 596 aa16.01■□□□□ 0.15
LIMS1-206ENST00000414829 HES2Q9Y543 173 aa16.01■□□□□ 0.15
LIMS1-206ENST00000414829 FSD2A1L4K1 749 aa16■□□□□ 0.15
LIMS1-206ENST00000414829 TTLL13PA6NNM8 815 aa16■□□□□ 0.15
LIMS1-206ENST00000414829 KIAA0391O15091 583 aaKnown RBP16■□□□□ 0.15
LIMS1-206ENST00000414829 KINO60870 393 aaKnown RBP16■□□□□ 0.15
LIMS1-206ENST00000414829 ZC3H11AO75152 810 aaKnown RBP eCLIP16■□□□□ 0.15
LIMS1-206ENST00000414829 EDN1P05305 212 aa16■□□□□ 0.15
LIMS1-206ENST00000414829 CLTAP09496 248 aa16■□□□□ 0.15
LIMS1-206ENST00000414829 LINC00271P0C7V0 271 aa16■□□□□ 0.15
LIMS1-206ENST00000414829 IGFBP4P22692 258 aa16■□□□□ 0.15
LIMS1-206ENST00000414829 UBE2HP62256 183 aa16■□□□□ 0.15
LIMS1-206ENST00000414829 SNRPFP62306 86 aaKnown RBP16■□□□□ 0.15
LIMS1-206ENST00000414829 POU5F1Q01860 360 aaKnown RBP16■□□□□ 0.15
LIMS1-206ENST00000414829 PSMD2Q13200 908 aa16■□□□□ 0.15
LIMS1-206ENST00000414829 PDE12Q6L8Q7 609 aaKnown RBP16■□□□□ 0.15
LIMS1-206ENST00000414829 KCNT2Q6UVM3 1135 aa16■□□□□ 0.15
LIMS1-206ENST00000414829 FMR1NBQ8N0W7 255 aaPredicted RBP16■□□□□ 0.15
LIMS1-206ENST00000414829 GDPD5Q8WTR4 605 aa16■□□□□ 0.15
LIMS1-206ENST00000414829 MYLIPQ8WY64 445 aa16■□□□□ 0.15
LIMS1-206ENST00000414829 MRPL38Q96DV4 380 aaKnown RBP16■□□□□ 0.15
LIMS1-206ENST00000414829 TMEM169Q96HH4 297 aa16■□□□□ 0.15
LIMS1-206ENST00000414829 TIGD1Q96MW7 591 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms