RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 RXFP1Q9HBX9 757 aa31.64■■■□□ 2.66
HMGB1-205ENST00000399494 TEX28O15482 410 aa31.63■■■□□ 2.65
HMGB1-205ENST00000399494 NCBP1Q09161 790 aaKnown RBP31.63■■■□□ 2.65
HMGB1-205ENST00000399494 TDGQ13569 410 aa31.63■■■□□ 2.65
HMGB1-205ENST00000399494 AMHR2Q16671 573 aa31.63■■■□□ 2.65
HMGB1-205ENST00000399494 MFSD1Q9H3U5 465 aa31.63■■■□□ 2.65
HMGB1-205ENST00000399494 KCNK12Q9HB15 430 aa31.63■■■□□ 2.65
HMGB1-205ENST00000399494 MAN1C1Q9NR34 630 aa31.63■■■□□ 2.65
HMGB1-205ENST00000399494 PCDHA12Q9UN75 941 aa31.63■■■□□ 2.65
HMGB1-205ENST00000399494 INO80B-WBP1J3KQ70 363 aa31.62■■■□□ 2.65
HMGB1-205ENST00000399494 ATP2B1P20020 1258 aa31.62■■■□□ 2.65
HMGB1-205ENST00000399494 ARL2P36404 184 aa31.62■■■□□ 2.65
HMGB1-205ENST00000399494 MLH1P40692 756 aa31.62■■■□□ 2.65
HMGB1-205ENST00000399494 SCNN1GP51170 649 aa31.62■■■□□ 2.65
HMGB1-205ENST00000399494 MBTD1Q05BQ5 628 aa31.62■■■□□ 2.65
HMGB1-205ENST00000399494 TFDP1Q14186 410 aa31.62■■■□□ 2.65
HMGB1-205ENST00000399494 ASAP3Q8TDY4 903 aa31.62■■■□□ 2.65
HMGB1-205ENST00000399494 ZFP42Q96MM3 310 aa31.62■■■□□ 2.65
HMGB1-205ENST00000399494 ANKEF1Q9NU02 776 aa31.62■■■□□ 2.65
HMGB1-205ENST00000399494 ARID2Q68CP9 1835 aa31.61■■■□□ 2.65
HMGB1-205ENST00000399494 CCDC195A0A1B0GUA6 201 aa31.61■■■□□ 2.65
HMGB1-205ENST00000399494 F8W810 466 aa31.61■■■□□ 2.65
HMGB1-205ENST00000399494 H3BQV1 296 aa31.61■■■□□ 2.65
HMGB1-205ENST00000399494 ADH1AP07327 375 aa31.61■■■□□ 2.65
HMGB1-205ENST00000399494 CUL4AQ13619 759 aa31.61■■■□□ 2.65
HMGB1-205ENST00000399494 CAPSQ13938 189 aa31.61■■■□□ 2.65
HMGB1-205ENST00000399494 NOSTRINQ8IVI9 506 aa31.61■■■□□ 2.65
HMGB1-205ENST00000399494 GIT1Q9Y2X7 761 aa31.61■■■□□ 2.65
HMGB1-205ENST00000399494 C2orf16Q68DN1 1984 aa31.61■■■□□ 2.65
HMGB1-205ENST00000399494 PLXNA3P51805 1871 aa31.61■■■□□ 2.65
HMGB1-205ENST00000399494 N4BP1O75113 896 aaKnown RBP31.6■■■□□ 2.65
HMGB1-205ENST00000399494 DGAT1O75907 488 aa31.6■■■□□ 2.65
HMGB1-205ENST00000399494 NPR3P17342 541 aa31.6■■■□□ 2.65
HMGB1-205ENST00000399494 ARF4P18085 180 aaPredicted RBP31.6■■■□□ 2.65
HMGB1-205ENST00000399494 GLUD2P49448 558 aa31.6■■■□□ 2.65
HMGB1-205ENST00000399494 DSG1Q02413 1049 aa31.6■■■□□ 2.65
HMGB1-205ENST00000399494 CYP26C1Q6V0L0 522 aa31.6■■■□□ 2.65
HMGB1-205ENST00000399494 RHOBTB2Q9BYZ6 727 aa31.6■■■□□ 2.65
HMGB1-205ENST00000399494 CHST7Q9NS84 486 aa31.6■■■□□ 2.65
HMGB1-205ENST00000399494 K7ELQ4 463 aaPredicted RBP31.59■■■□□ 2.65
HMGB1-205ENST00000399494 NBL1P41271 181 aa31.59■■■□□ 2.65
HMGB1-205ENST00000399494 CWF19L1Q69YN2 538 aaKnown RBP31.59■■■□□ 2.65
HMGB1-205ENST00000399494 MCTP1Q6DN14 999 aa31.59■■■□□ 2.65
HMGB1-205ENST00000399494 GSTCDQ8NEC7 633 aa31.59■■■□□ 2.65
HMGB1-205ENST00000399494 COLEC11Q9BWP8 271 aa31.59■■■□□ 2.65
HMGB1-205ENST00000399494 APOL6Q9BWW8 343 aa31.59■■■□□ 2.65
HMGB1-205ENST00000399494 NFKBIZQ9BYH8 718 aa31.59■■■□□ 2.65
HMGB1-205ENST00000399494 WDR6Q9NNW5 1121 aaKnown RBP31.59■■■□□ 2.65
HMGB1-205ENST00000399494 DPP7Q9UHL4 492 aa31.59■■■□□ 2.65
HMGB1-205ENST00000399494 NOL7Q9UMY1 257 aaKnown RBP31.59■■■□□ 2.65
HMGB1-205ENST00000399494 DUSP12Q9UNI6 340 aa31.59■■■□□ 2.65
HMGB1-205ENST00000399494 NEMFO60524 1076 aa31.58■■■□□ 2.65
HMGB1-205ENST00000399494 GLUD1P00367 558 aa31.58■■■□□ 2.65
HMGB1-205ENST00000399494 GLRA2P23416 452 aa31.58■■■□□ 2.65
HMGB1-205ENST00000399494 CALCRLQ16602 461 aa31.58■■■□□ 2.65
HMGB1-205ENST00000399494 FLCNQ8NFG4 579 aa31.58■■■□□ 2.65
HMGB1-205ENST00000399494 NXF3Q9H4D5 531 aaKnown RBP31.58■■■□□ 2.65
HMGB1-205ENST00000399494 TTC12Q9H892 705 aaPredicted RBP31.58■■■□□ 2.65
HMGB1-205ENST00000399494 IGSF9Q9P2J2 1179 aa31.58■■■□□ 2.65
HMGB1-205ENST00000399494 PI15O43692 258 aa31.57■■■□□ 2.64
HMGB1-205ENST00000399494 NR1I2O75469 434 aa31.57■■■□□ 2.64
HMGB1-205ENST00000399494 MYBP10242 640 aa31.57■■■□□ 2.64
HMGB1-205ENST00000399494 LARP1BQ659C4 914 aaKnown RBP31.57■■■□□ 2.64
HMGB1-205ENST00000399494 HDAC7Q8WUI4 952 aa31.57■■■□□ 2.64
HMGB1-205ENST00000399494 MYO15AQ9UKN7 3530 aa31.56■■■□□ 2.64
HMGB1-205ENST00000399494 A0A087WWV3 80 aa31.56■■■□□ 2.64
HMGB1-205ENST00000399494 B4GALT5O43286 388 aa31.56■■■□□ 2.64
HMGB1-205ENST00000399494 RFPL2O75678 378 aa31.56■■■□□ 2.64
HMGB1-205ENST00000399494 PAPLNO95428 1278 aa31.56■■■□□ 2.64
HMGB1-205ENST00000399494 C1RP00736 705 aa31.56■■■□□ 2.64
HMGB1-205ENST00000399494 SPATA31D3P0C874 917 aa31.56■■■□□ 2.64
HMGB1-205ENST00000399494 AKAP5P24588 427 aa31.56■■■□□ 2.64
HMGB1-205ENST00000399494 MCM7P33993 719 aa31.56■■■□□ 2.64
HMGB1-205ENST00000399494 RARRES1P49788 294 aa31.56■■■□□ 2.64
HMGB1-205ENST00000399494 ELMSAN1Q6PJG2 1045 aa31.56■■■□□ 2.64
HMGB1-205ENST00000399494 SPATA31D4Q6ZUB0 917 aa31.56■■■□□ 2.64
HMGB1-205ENST00000399494 ASCL5Q7RTU5 278 aa31.56■■■□□ 2.64
HMGB1-205ENST00000399494 CDR2LQ86X02 465 aaPredicted RBP31.56■■■□□ 2.64
HMGB1-205ENST00000399494 HSCBQ8IWL3 235 aa31.56■■■□□ 2.64
HMGB1-205ENST00000399494 PIGOQ8TEQ8 1089 aa31.56■■■□□ 2.64
HMGB1-205ENST00000399494 GPR62Q9BZJ7 368 aa31.56■■■□□ 2.64
HMGB1-205ENST00000399494 TRIM6Q9C030 488 aaPredicted RBP31.56■■■□□ 2.64
HMGB1-205ENST00000399494 CFAP54Q96N23 3096 aa31.56■■■□□ 2.64
HMGB1-205ENST00000399494 A0A1B0GUA9 196 aa31.55■■■□□ 2.64
HMGB1-205ENST00000399494 WNT7AO00755 349 aa31.55■■■□□ 2.64
HMGB1-205ENST00000399494 XRCC6P12956 609 aaKnown RBP eCLIP31.55■■■□□ 2.64
HMGB1-205ENST00000399494 AOC1P19801 751 aa31.55■■■□□ 2.64
HMGB1-205ENST00000399494 U2AF2P26368 475 aaKnown RBP eCLIP31.55■■■□□ 2.641e-7■■■■■ 37.5
HMGB1-205ENST00000399494 TXKP42681 527 aa31.55■■■□□ 2.64
HMGB1-205ENST00000399494 PALB2Q86YC2 1186 aa31.55■■■□□ 2.64
HMGB1-205ENST00000399494 HACE1Q8IYU2 909 aa31.55■■■□□ 2.64
HMGB1-205ENST00000399494 SNX21Q969T3 373 aa31.55■■■□□ 2.64
HMGB1-205ENST00000399494 ZNF707Q96C28 371 aaPredicted RBP31.55■■■□□ 2.64
HMGB1-205ENST00000399494 B3GALT6Q96L58 329 aa31.55■■■□□ 2.64
HMGB1-205ENST00000399494 MTMR9Q96QG7 549 aa31.55■■■□□ 2.64
HMGB1-205ENST00000399494 GBP2P32456 591 aaPredicted RBP31.54■■■□□ 2.64
HMGB1-205ENST00000399494 SLC27A1Q6PCB7 646 aa31.54■■■□□ 2.64
HMGB1-205ENST00000399494 LILRA6Q6PI73 481 aa31.54■■■□□ 2.64
HMGB1-205ENST00000399494 GPR65Q8IYL9 337 aa31.54■■■□□ 2.64
HMGB1-205ENST00000399494 RSAD2Q8WXG1 361 aa31.54■■■□□ 2.64
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms