RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 HARSP12081 509 aaKnown RBP15.5■□□□□ 0.07
SKA1-202ENST00000398452 AXLP30530 894 aa15.5■□□□□ 0.07
SKA1-202ENST00000398452 PPP2R3AQ06190 1150 aa15.5■□□□□ 0.07
SKA1-202ENST00000398452 ZNF568Q3ZCX4 644 aa15.5■□□□□ 0.07
SKA1-202ENST00000398452 FKBP15Q5T1M5 1219 aa15.5■□□□□ 0.07
SKA1-202ENST00000398452 CDKAL1Q5VV42 579 aa15.5■□□□□ 0.07
SKA1-202ENST00000398452 TAS1R3Q7RTX0 852 aa15.5■□□□□ 0.07
SKA1-202ENST00000398452 FAM186BQ8IYM0 893 aa15.5■□□□□ 0.07
SKA1-202ENST00000398452 GPD1LQ8N335 351 aa15.5■□□□□ 0.07
SKA1-202ENST00000398452 CAGE1Q8TC20 777 aa15.5■□□□□ 0.07
SKA1-202ENST00000398452 EEF2KMTQ96G04 330 aa15.5■□□□□ 0.07
SKA1-202ENST00000398452 MED15Q96RN5 788 aa15.5■□□□□ 0.07
SKA1-202ENST00000398452 NOC4LQ9BVI4 516 aaKnown RBP15.5■□□□□ 0.07
SKA1-202ENST00000398452 ADAMTS10Q9H324 1103 aa15.5■□□□□ 0.07
SKA1-202ENST00000398452 AGO2Q9UKV8 859 aaKnown RBP15.5■□□□□ 0.07
SKA1-202ENST00000398452 CNTNAP2Q9UHC6 1331 aa15.49■□□□□ 0.07
SKA1-202ENST00000398452 GPR182O15218 404 aa15.49■□□□□ 0.07
SKA1-202ENST00000398452 PQBP1O60828 265 aaKnown RBP15.49■□□□□ 0.07
SKA1-202ENST00000398452 ZNF18P17022 549 aa15.49■□□□□ 0.07
SKA1-202ENST00000398452 SNX17Q15036 470 aa15.49■□□□□ 0.07
SKA1-202ENST00000398452 KYAT1Q16773 422 aa15.49■□□□□ 0.07
SKA1-202ENST00000398452 TCERG1LQ5VWI1 586 aa15.49■□□□□ 0.07
SKA1-202ENST00000398452 NOTUMQ6P988 496 aa15.49■□□□□ 0.07
SKA1-202ENST00000398452 SARM1Q6SZW1 724 aa15.49■□□□□ 0.07
SKA1-202ENST00000398452 MPZL3Q6UWV2 235 aa15.49■□□□□ 0.07
SKA1-202ENST00000398452 SLC39A5Q6ZMH5 540 aa15.49■□□□□ 0.07
SKA1-202ENST00000398452 LRRC55Q6ZSA7 311 aa15.49■□□□□ 0.07
SKA1-202ENST00000398452 INTS8Q75QN2 995 aaKnown RBP15.49■□□□□ 0.07
SKA1-202ENST00000398452 FRMD5Q7Z6J6 570 aa15.49■□□□□ 0.07
SKA1-202ENST00000398452 DRC7Q8IY82 874 aa15.49■□□□□ 0.07
SKA1-202ENST00000398452 ACO2Q99798 780 aaKnown RBP15.49■□□□□ 0.07
SKA1-202ENST00000398452 CBWD1Q9BRT8 395 aa15.49■□□□□ 0.07
SKA1-202ENST00000398452 TUBGCP2Q9BSJ2 902 aa15.49■□□□□ 0.07
SKA1-202ENST00000398452 TRIM6Q9C030 488 aaPredicted RBP15.49■□□□□ 0.07
SKA1-202ENST00000398452 TRPV6Q9H1D0 765 aa15.49■□□□□ 0.07
SKA1-202ENST00000398452 TNFSF13BQ9Y275 285 aa15.49■□□□□ 0.07
SKA1-202ENST00000398452 FRMPD3Q5JV73 1810 aa15.49■□□□□ 0.07
SKA1-202ENST00000398452 ZNF233A6NK53 670 aa15.48■□□□□ 0.07
SKA1-202ENST00000398452 ANKRD63C9JTQ0 380 aa15.48■□□□□ 0.07
SKA1-202ENST00000398452 EXTL3O43909 919 aa15.48■□□□□ 0.07
SKA1-202ENST00000398452 ATP1A3P13637 1013 aa15.48■□□□□ 0.07
SKA1-202ENST00000398452 COPB1P53618 953 aaKnown RBP15.48■□□□□ 0.07
SKA1-202ENST00000398452 NOLC1Q14978 699 aaKnown RBP eCLIP15.48■□□□□ 0.07
SKA1-202ENST00000398452 MAN2A1Q16706 1144 aa15.48■□□□□ 0.07
SKA1-202ENST00000398452 TSHZ1Q6ZSZ6 1077 aa15.48■□□□□ 0.07
SKA1-202ENST00000398452 ZBTB33Q86T24 672 aa15.48■□□□□ 0.07
SKA1-202ENST00000398452 ZC3H3Q8IXZ2 948 aaKnown RBP15.48■□□□□ 0.07
SKA1-202ENST00000398452 USP38Q8NB14 1042 aa15.48■□□□□ 0.07
SKA1-202ENST00000398452 RDH13Q8NBN7 331 aa15.48■□□□□ 0.07
SKA1-202ENST00000398452 PRO3102Q9H379 93 aa15.48■□□□□ 0.07
SKA1-202ENST00000398452 MINDY3Q9H8M7 445 aa15.48■□□□□ 0.07
SKA1-202ENST00000398452 TAB2Q9NYJ8 693 aa15.48■□□□□ 0.07
SKA1-202ENST00000398452 IFNKQ9P0W0 207 aa15.48■□□□□ 0.07
SKA1-202ENST00000398452 LIMA1Q9UHB6 759 aaKnown RBP15.48■□□□□ 0.07
SKA1-202ENST00000398452 PIN4Q9Y237 131 aaKnown RBP15.48■□□□□ 0.07
SKA1-202ENST00000398452 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.48■□□□□ 0.07
SKA1-202ENST00000398452 MAPK13O15264 365 aa15.47■□□□□ 0.07
SKA1-202ENST00000398452 STX10O60499 249 aa15.47■□□□□ 0.07
SKA1-202ENST00000398452 TSPAN1O60635 241 aa15.47■□□□□ 0.07
SKA1-202ENST00000398452 CSDE1O75534 798 aaKnown RBP15.47■□□□□ 0.07
SKA1-202ENST00000398452 ADCY5O95622 1261 aa15.47■□□□□ 0.07
SKA1-202ENST00000398452 ZSCAN20P17040 1043 aaPredicted RBP15.47■□□□□ 0.07
SKA1-202ENST00000398452 CDK7P50613 346 aa15.47■□□□□ 0.07
SKA1-202ENST00000398452 NFX1Q12986 1120 aaKnown RBP15.47■□□□□ 0.07
SKA1-202ENST00000398452 PAK2Q13177 524 aa15.47■□□□□ 0.07
SKA1-202ENST00000398452 KRT31Q15323 416 aa15.47■□□□□ 0.07
SKA1-202ENST00000398452 SNRNP35Q16560 246 aaKnown RBP15.47■□□□□ 0.07
SKA1-202ENST00000398452 LRRC26Q2I0M4 334 aa15.47■□□□□ 0.07
SKA1-202ENST00000398452 DCAF4L1Q3SXM0 396 aa15.47■□□□□ 0.07
SKA1-202ENST00000398452 DCAF17Q5H9S7 520 aaPredicted RBP15.47■□□□□ 0.07
SKA1-202ENST00000398452 FAM126BQ8IXS8 530 aa15.47■□□□□ 0.07
SKA1-202ENST00000398452 HACE1Q8IYU2 909 aa15.47■□□□□ 0.07
SKA1-202ENST00000398452 TMEM174Q8WUU8 243 aa15.47■□□□□ 0.07
SKA1-202ENST00000398452 SAAL1Q96ER3 474 aa15.47■□□□□ 0.07
SKA1-202ENST00000398452 CCDC51Q96ER9 411 aa15.47■□□□□ 0.07
SKA1-202ENST00000398452 FNBP1Q96RU3 617 aa15.47■□□□□ 0.07
SKA1-202ENST00000398452 VPS16Q9H269 839 aa15.47■□□□□ 0.07
SKA1-202ENST00000398452 DMAC2Q9NW81 257 aa15.47■□□□□ 0.07
SKA1-202ENST00000398452 STYXL1Q9Y6J8 313 aa15.47■□□□□ 0.07
SKA1-202ENST00000398452 GOLGA8IPA6NC78 632 aa15.46■□□□□ 0.07
SKA1-202ENST00000398452 GOLGA8JA6NMD2 632 aa15.46■□□□□ 0.07
SKA1-202ENST00000398452 TISP43B9A030 160 aa15.46■□□□□ 0.07
SKA1-202ENST00000398452 SOX1O00570 391 aaPredicted RBP15.46■□□□□ 0.07
SKA1-202ENST00000398452 OGTO15294 1046 aa15.46■□□□□ 0.07
SKA1-202ENST00000398452 B4GALT5O43286 388 aa15.46■□□□□ 0.07
SKA1-202ENST00000398452 AKAP3O75969 853 aa15.46■□□□□ 0.07
SKA1-202ENST00000398452 MCF2P10911 925 aa15.46■□□□□ 0.07
SKA1-202ENST00000398452 ARF4P18085 180 aaPredicted RBP15.46■□□□□ 0.07
SKA1-202ENST00000398452 MAGEA10P43363 369 aaPredicted RBP15.46■□□□□ 0.07
SKA1-202ENST00000398452 MARSP56192 900 aaKnown RBP15.46■□□□□ 0.07
SKA1-202ENST00000398452 MCL1Q07820 350 aa15.46■□□□□ 0.07
SKA1-202ENST00000398452 CETN1Q12798 172 aa15.46■□□□□ 0.07
SKA1-202ENST00000398452 SURF1Q15526 300 aa15.46■□□□□ 0.07
SKA1-202ENST00000398452 C1orf53Q5VUE5 145 aa15.46■□□□□ 0.07
SKA1-202ENST00000398452 LRCH3Q96II8 777 aa15.46■□□□□ 0.07
SKA1-202ENST00000398452 CPB2Q96IY4 423 aa15.46■□□□□ 0.07
SKA1-202ENST00000398452 PCMTD1Q96MG8 357 aaPredicted RBP15.46■□□□□ 0.07
SKA1-202ENST00000398452 TOX2Q96NM4 488 aa15.46■□□□□ 0.07
SKA1-202ENST00000398452 FAM213AQ9BRX8 229 aa15.46■□□□□ 0.07
SKA1-202ENST00000398452 IKZF4Q9H2S9 585 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms