RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 A0A1B0GVL5 298 aa23.83■■□□□ 1.4
CLN3-207ENST00000395653 IDEP14735 1019 aa23.83■■□□□ 1.4
CLN3-207ENST00000395653 MLH1P40692 756 aa23.83■■□□□ 1.4
CLN3-207ENST00000395653 GTF2BQ00403 316 aa23.83■■□□□ 1.4
CLN3-207ENST00000395653 ZNF568Q3ZCX4 644 aa23.83■■□□□ 1.4
CLN3-207ENST00000395653 CNNM4Q6P4Q7 775 aa23.83■■□□□ 1.4
CLN3-207ENST00000395653 KLHL23Q8NBE8 558 aa23.83■■□□□ 1.4
CLN3-207ENST00000395653 MAFAQ8NHW3 353 aaPredicted RBP23.83■■□□□ 1.4
CLN3-207ENST00000395653 GAD1Q99259 594 aa23.83■■□□□ 1.4
CLN3-207ENST00000395653 LMAN2LQ9H0V9 348 aa23.83■■□□□ 1.4
CLN3-207ENST00000395653 OLFML3Q9NRN5 406 aa23.83■■□□□ 1.4
CLN3-207ENST00000395653 TBX20Q9UMR3 447 aa23.83■■□□□ 1.4
CLN3-207ENST00000395653 CARNS1A5YM72 827 aa23.82■■□□□ 1.4
CLN3-207ENST00000395653 ARL5CA6NH57 179 aa23.82■■□□□ 1.4
CLN3-207ENST00000395653 ABLIM1O14639 778 aa23.82■■□□□ 1.4
CLN3-207ENST00000395653 TOM1L1O75674 476 aa23.82■■□□□ 1.4
CLN3-207ENST00000395653 AKAP5P24588 427 aa23.82■■□□□ 1.4
CLN3-207ENST00000395653 NMT1P30419 496 aaKnown RBP23.82■■□□□ 1.4
CLN3-207ENST00000395653 RNASELQ05823 741 aaKnown RBP23.82■■□□□ 1.4
CLN3-207ENST00000395653 PTPROQ16827 1216 aa23.82■■□□□ 1.4
CLN3-207ENST00000395653 KCNT2Q6UVM3 1135 aa23.82■■□□□ 1.4
CLN3-207ENST00000395653 MPZL3Q6UWV2 235 aa23.82■■□□□ 1.4
CLN3-207ENST00000395653 ZNF558Q96NG5 402 aa23.82■■□□□ 1.4
CLN3-207ENST00000395653 CDT1Q9H211 546 aa23.82■■□□□ 1.4
CLN3-207ENST00000395653 PANK4Q9NVE7 773 aa23.82■■□□□ 1.4
CLN3-207ENST00000395653 SNTG2Q9NY99 539 aa23.82■■□□□ 1.4
CLN3-207ENST00000395653 USP25Q9UHP3 1055 aa23.82■■□□□ 1.4
CLN3-207ENST00000395653 PLAGL2Q9UPG8 496 aa23.82■■□□□ 1.4
CLN3-207ENST00000395653 PIGRP01833 764 aa23.81■■□□□ 1.4
CLN3-207ENST00000395653 ITGB1P05556 798 aa23.81■■□□□ 1.4
CLN3-207ENST00000395653 SLFN14P0C7P3 912 aa23.81■■□□□ 1.4
CLN3-207ENST00000395653 MCF2P10911 925 aa23.81■■□□□ 1.4
CLN3-207ENST00000395653 PPM1AP35813 382 aa23.81■■□□□ 1.4
CLN3-207ENST00000395653 AFF1P51825 1210 aaKnown RBP23.81■■□□□ 1.4
CLN3-207ENST00000395653 HERC4Q5GLZ8 1057 aaPredicted RBP23.81■■□□□ 1.4
CLN3-207ENST00000395653 ZNF720Q7Z2F6 126 aa23.81■■□□□ 1.4
CLN3-207ENST00000395653 MAP4K3Q8IVH8 894 aa23.81■■□□□ 1.4
CLN3-207ENST00000395653 CCDC65Q8IXS2 484 aa23.81■■□□□ 1.4
CLN3-207ENST00000395653 CEP57L1Q8IYX8 460 aa23.81■■□□□ 1.4
CLN3-207ENST00000395653 MRPS27Q92552 414 aaKnown RBP23.81■■□□□ 1.4
CLN3-207ENST00000395653 MRPL38Q96DV4 380 aaKnown RBP23.81■■□□□ 1.4
CLN3-207ENST00000395653 C7orf25Q9BPX7 421 aa23.81■■□□□ 1.4
CLN3-207ENST00000395653 CHMP5Q9NZZ3 219 aa23.81■■□□□ 1.4
CLN3-207ENST00000395653 PARP2Q9UGN5 583 aa23.81■■□□□ 1.4
CLN3-207ENST00000395653 GRM6O15303 877 aa23.8■■□□□ 1.4
CLN3-207ENST00000395653 ACTN4O43707 911 aaKnown RBP23.8■■□□□ 1.4
CLN3-207ENST00000395653 THNSL1Q8IYQ7 743 aa23.8■■□□□ 1.4
CLN3-207ENST00000395653 HVCN1Q96D96 273 aa23.8■■□□□ 1.4
CLN3-207ENST00000395653 BICD1Q96G01 975 aa23.8■■□□□ 1.4
CLN3-207ENST00000395653 ZFP42Q96MM3 310 aa23.8■■□□□ 1.4
CLN3-207ENST00000395653 TCHPQ9BT92 498 aa23.8■■□□□ 1.4
CLN3-207ENST00000395653 NRDE2Q9H7Z3 1164 aa23.8■■□□□ 1.4
CLN3-207ENST00000395653 MRPL44Q9H9J2 332 aaKnown RBP23.8■■□□□ 1.4
CLN3-207ENST00000395653 ALG13Q9NP73 1137 aaKnown RBP23.8■■□□□ 1.4
CLN3-207ENST00000395653 SERTAD1Q9UHV2 236 aa23.8■■□□□ 1.4
CLN3-207ENST00000395653 COL6A3P12111 3177 aa23.8■■□□□ 1.4
CLN3-207ENST00000395653 HNRNPDLO14979 420 aaKnown RBP23.79■■□□□ 1.4
CLN3-207ENST00000395653 ZC3H11AO75152 810 aaKnown RBP eCLIP23.79■■□□□ 1.4
CLN3-207ENST00000395653 PPP1R37O75864 691 aa23.79■■□□□ 1.4
CLN3-207ENST00000395653 FGF18O76093 207 aa23.79■■□□□ 1.4
CLN3-207ENST00000395653 RECQL4O94761 1208 aa23.79■■□□□ 1.4
CLN3-207ENST00000395653 POMCP01189 267 aa23.79■■□□□ 1.4
CLN3-207ENST00000395653 GRM5P41594 1212 aa23.79■■□□□ 1.4
CLN3-207ENST00000395653 SYKP43405 635 aa23.79■■□□□ 1.4
CLN3-207ENST00000395653 ALDH7A1P49419 539 aaKnown RBP23.79■■□□□ 1.4
CLN3-207ENST00000395653 BCAR1P56945 870 aa23.79■■□□□ 1.4
CLN3-207ENST00000395653 UBE3AQ05086 875 aa23.79■■□□□ 1.4
CLN3-207ENST00000395653 FSIP1Q8NA03 581 aa23.79■■□□□ 1.4
CLN3-207ENST00000395653 GSTCDQ8NEC7 633 aa23.79■■□□□ 1.4
CLN3-207ENST00000395653 SPPL3Q8TCT6 385 aa23.79■■□□□ 1.4
CLN3-207ENST00000395653 STRA6Q9BX79 667 aa23.79■■□□□ 1.4
CLN3-207ENST00000395653 CLDN3O15551 220 aa23.78■■□□□ 1.4
CLN3-207ENST00000395653 LIG4P49917 911 aa23.78■■□□□ 1.4
CLN3-207ENST00000395653 SCNN1GP51170 649 aa23.78■■□□□ 1.4
CLN3-207ENST00000395653 NDUFA8P51970 172 aa23.78■■□□□ 1.4
CLN3-207ENST00000395653 ASIC1P78348 528 aa23.78■■□□□ 1.4
CLN3-207ENST00000395653 PLCB3Q01970 1234 aa23.78■■□□□ 1.4
CLN3-207ENST00000395653 MCL1Q07820 350 aa23.78■■□□□ 1.4
CLN3-207ENST00000395653 ALCAMQ13740 583 aa23.78■■□□□ 1.4
CLN3-207ENST00000395653 NOLC1Q14978 699 aaKnown RBP eCLIP23.78■■□□□ 1.4
CLN3-207ENST00000395653 ZC2HC1CQ53FD0 456 aaPredicted RBP23.78■■□□□ 1.4
CLN3-207ENST00000395653 ZBTB33Q86T24 672 aa23.78■■□□□ 1.4
CLN3-207ENST00000395653 ZNF280BQ86YH2 543 aa23.78■■□□□ 1.4
CLN3-207ENST00000395653 ZBTB45Q96K62 511 aaPredicted RBP23.78■■□□□ 1.4
CLN3-207ENST00000395653 FAM193BQ96PV7 902 aaPredicted RBP23.78■■□□□ 1.4
CLN3-207ENST00000395653 RPS6KC1Q96S38 1066 aa23.78■■□□□ 1.4
CLN3-207ENST00000395653 TMEM175Q9BSA9 504 aa23.78■■□□□ 1.4
CLN3-207ENST00000395653 CCDC94Q9BW85 323 aaPredicted RBP23.78■■□□□ 1.4
CLN3-207ENST00000395653 KLK14Q9P0G3 267 aa23.78■■□□□ 1.4
CLN3-207ENST00000395653 ANKFY1Q9P2R3 1169 aa23.78■■□□□ 1.4
CLN3-207ENST00000395653 B4GALT3O60512 393 aa23.77■■□□□ 1.4
CLN3-207ENST00000395653 DDHD2O94830 711 aa23.77■■□□□ 1.4
CLN3-207ENST00000395653 PBX3P40426 434 aa23.77■■□□□ 1.4
CLN3-207ENST00000395653 GRIK3Q13003 919 aa23.77■■□□□ 1.4
CLN3-207ENST00000395653 COASYQ13057 564 aa23.77■■□□□ 1.4
CLN3-207ENST00000395653 SLC39A11Q8N1S5 342 aa23.77■■□□□ 1.4
CLN3-207ENST00000395653 CEP120Q8N960 986 aa23.77■■□□□ 1.4
CLN3-207ENST00000395653 GBP3Q9H0R5 595 aa23.77■■□□□ 1.4
CLN3-207ENST00000395653 MIOSQ9NXC5 875 aa23.77■■□□□ 1.4
CLN3-207ENST00000395653 SPG21Q9NZD8 308 aa23.77■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms