RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 B4GALT5O43286 388 aa11.1□□□□□ -0.63
COL6A3-205ENST00000392004 SPOPO43791 374 aa11.1□□□□□ -0.63
COL6A3-205ENST00000392004 ACTN1P12814 892 aa11.1□□□□□ -0.63
COL6A3-205ENST00000392004 CYP2C18P33260 490 aa11.1□□□□□ -0.63
COL6A3-205ENST00000392004 EFNA5P52803 228 aa11.1□□□□□ -0.63
COL6A3-205ENST00000392004 TLE2Q04725 743 aa11.1□□□□□ -0.63
COL6A3-205ENST00000392004 CCDC122Q5T0U0 273 aa11.1□□□□□ -0.63
COL6A3-205ENST00000392004 NECAB2Q7Z6G3 386 aa11.1□□□□□ -0.63
COL6A3-205ENST00000392004 CEP120Q8N960 986 aa11.1□□□□□ -0.63
COL6A3-205ENST00000392004 HIPK3Q9H422 1215 aa11.1□□□□□ -0.63
COL6A3-205ENST00000392004 PSD3Q9NYI0 1048 aa11.1□□□□□ -0.63
COL6A3-205ENST00000392004 DDX20Q9UHI6 824 aaKnown RBP11.1□□□□□ -0.63
COL6A3-205ENST00000392004 SYNPO2Q9UMS6 1093 aa11.1□□□□□ -0.63
COL6A3-205ENST00000392004 MRFAP1Q9Y605 127 aa11.1□□□□□ -0.63
COL6A3-205ENST00000392004 HUS1O60921 280 aa11.09□□□□□ -0.63
COL6A3-205ENST00000392004 ADORA2BP29275 332 aa11.09□□□□□ -0.63
COL6A3-205ENST00000392004 MAGEA1P43355 309 aa11.09□□□□□ -0.63
COL6A3-205ENST00000392004 BFSP2Q13515 415 aa11.09□□□□□ -0.63
COL6A3-205ENST00000392004 SNRNP35Q16560 246 aaKnown RBP11.09□□□□□ -0.63
COL6A3-205ENST00000392004 CTU1Q7Z7A3 348 aaKnown RBP11.09□□□□□ -0.63
COL6A3-205ENST00000392004 METTL23Q86XA0 190 aa11.09□□□□□ -0.63
COL6A3-205ENST00000392004 SLAIN1Q8ND83 568 aa11.09□□□□□ -0.63
COL6A3-205ENST00000392004 URGCPQ8TCY9 931 aa11.09□□□□□ -0.63
COL6A3-205ENST00000392004 WDR24Q96S15 920 aa11.09□□□□□ -0.63
COL6A3-205ENST00000392004 GPR20Q99678 358 aa11.09□□□□□ -0.63
COL6A3-205ENST00000392004 PCDHB7Q9Y5E2 793 aa11.09□□□□□ -0.63
COL6A3-205ENST00000392004 UBR2Q8IWV8 1755 aa11.09□□□□□ -0.63
COL6A3-205ENST00000392004 ZNF862O60290 1169 aa11.09□□□□□ -0.63
COL6A3-205ENST00000392004 TUBB4BP68371 445 aa11.09□□□□□ -0.63
COL6A3-205ENST00000392004 C4orf19Q8IY42 314 aa11.09□□□□□ -0.63
COL6A3-205ENST00000392004 LMBR1Q8WVP7 490 aa11.09□□□□□ -0.63
COL6A3-205ENST00000392004 TYW1Q9NV66 732 aaKnown RBP11.09□□□□□ -0.63
COL6A3-205ENST00000392004 TRIM66O15016 1216 aa11.09□□□□□ -0.63
COL6A3-205ENST00000392004 BUB1O43683 1085 aa11.09□□□□□ -0.63
COL6A3-205ENST00000392004 GNA14O95837 355 aa11.09□□□□□ -0.63
COL6A3-205ENST00000392004 MMP3P08254 477 aa11.09□□□□□ -0.63
COL6A3-205ENST00000392004 CXCL8P10145 99 aa11.09□□□□□ -0.63
COL6A3-205ENST00000392004 CETN2P41208 172 aa11.09□□□□□ -0.63
COL6A3-205ENST00000392004 TTC31Q49AM3 519 aaPredicted RBP11.09□□□□□ -0.63
COL6A3-205ENST00000392004 ZNF484Q5JVG2 852 aa11.09□□□□□ -0.63
COL6A3-205ENST00000392004 ADAT2Q7Z6V5 191 aaKnown RBP11.09□□□□□ -0.63
COL6A3-205ENST00000392004 SHISA4Q96DD7 197 aa11.09□□□□□ -0.63
COL6A3-205ENST00000392004 NOX5Q96PH1 765 aa11.09□□□□□ -0.63
COL6A3-205ENST00000392004 MTMR9Q96QG7 549 aa11.09□□□□□ -0.63
COL6A3-205ENST00000392004 GAD1Q99259 594 aa11.09□□□□□ -0.63
COL6A3-205ENST00000392004 HINFPQ9BQA5 517 aa11.09□□□□□ -0.63
COL6A3-205ENST00000392004 FUT8Q9BYC5 575 aa11.09□□□□□ -0.63
COL6A3-205ENST00000392004 MTIF3Q9H2K0 278 aaKnown RBP11.09□□□□□ -0.63
COL6A3-205ENST00000392004 FAM49BQ9NUQ9 324 aa11.09□□□□□ -0.63
COL6A3-205ENST00000392004 TBX20Q9UMR3 447 aa11.09□□□□□ -0.63
COL6A3-205ENST00000392004 NUP188Q5SRE5 1749 aa11.09□□□□□ -0.63
COL6A3-205ENST00000392004 UBR3Q6ZT12 1888 aa11.08□□□□□ -0.63
COL6A3-205ENST00000392004 I3L4J1 428 aa11.08□□□□□ -0.64
COL6A3-205ENST00000392004 OPLAHO14841 1288 aa11.08□□□□□ -0.64
COL6A3-205ENST00000392004 SNAI1O95863 264 aaPredicted RBP11.08□□□□□ -0.64
COL6A3-205ENST00000392004 RFC5P40937 340 aa11.08□□□□□ -0.64
COL6A3-205ENST00000392004 DPYDQ12882 1025 aa11.08□□□□□ -0.64
COL6A3-205ENST00000392004 PSMD2Q13200 908 aa11.08□□□□□ -0.64
COL6A3-205ENST00000392004 MAN2A1Q16706 1144 aa11.08□□□□□ -0.64
COL6A3-205ENST00000392004 CNGA4Q8IV77 575 aa11.08□□□□□ -0.64
COL6A3-205ENST00000392004 ETNPPLQ8TBG4 499 aa11.08□□□□□ -0.64
COL6A3-205ENST00000392004 ASAP3Q8TDY4 903 aa11.08□□□□□ -0.64
COL6A3-205ENST00000392004 BLOC1S4Q9NUP1 217 aa11.08□□□□□ -0.64
COL6A3-205ENST00000392004 USP54Q70EL1 1684 aa11.08□□□□□ -0.64
COL6A3-205ENST00000392004 TBKBP1A7MCY6 615 aa11.08□□□□□ -0.64
COL6A3-205ENST00000392004 A8MXQ7 604 aa11.08□□□□□ -0.64
COL6A3-205ENST00000392004 ERCC5P28715 1186 aaPredicted RBP11.08□□□□□ -0.64
COL6A3-205ENST00000392004 CASP5P51878 434 aa11.08□□□□□ -0.64
COL6A3-205ENST00000392004 ORC2Q13416 577 aaPredicted RBP11.08□□□□□ -0.64
COL6A3-205ENST00000392004 NOTUMQ6P988 496 aa11.08□□□□□ -0.64
COL6A3-205ENST00000392004 SRLQ86TD4 932 aa11.08□□□□□ -0.64
COL6A3-205ENST00000392004 GPD1LQ8N335 351 aa11.08□□□□□ -0.64
COL6A3-205ENST00000392004 BEST2Q8NFU1 509 aa11.08□□□□□ -0.64
COL6A3-205ENST00000392004 PIDD1Q9HB75 910 aa11.08□□□□□ -0.64
COL6A3-205ENST00000392004 KCNMB3Q9NPA1 279 aa11.08□□□□□ -0.64
COL6A3-205ENST00000392004 RWDD2AQ9UIY3 292 aa11.08□□□□□ -0.64
COL6A3-205ENST00000392004 NR2E3Q9Y5X4 410 aa11.08□□□□□ -0.64
COL6A3-205ENST00000392004 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.08□□□□□ -0.64
COL6A3-205ENST00000392004 GSTTP1A0A1W2PQM5 241 aa11.08□□□□□ -0.64
COL6A3-205ENST00000392004 NKRFO15226 690 aaKnown RBP eCLIP11.08□□□□□ -0.64
COL6A3-205ENST00000392004 BNIP3LO60238 219 aa11.08□□□□□ -0.64
COL6A3-205ENST00000392004 MSCO60682 206 aa11.08□□□□□ -0.64
COL6A3-205ENST00000392004 DUSP11O75319 330 aaKnown RBP11.08□□□□□ -0.64
COL6A3-205ENST00000392004 KCNA2P16389 499 aa11.08□□□□□ -0.64
COL6A3-205ENST00000392004 ALDH7A1P49419 539 aaKnown RBP11.08□□□□□ -0.64
COL6A3-205ENST00000392004 PTK2Q05397 1052 aa11.08□□□□□ -0.64
COL6A3-205ENST00000392004 NPY5RQ15761 445 aa11.08□□□□□ -0.64
COL6A3-205ENST00000392004 DUOXA2Q1HG44 320 aa11.08□□□□□ -0.64
COL6A3-205ENST00000392004 SRGAP1Q7Z6B7 1085 aa11.08□□□□□ -0.64
COL6A3-205ENST00000392004 ZNF653Q96CK0 615 aa11.08□□□□□ -0.64
COL6A3-205ENST00000392004 PRMT7Q9NVM4 692 aaPredicted RBP11.08□□□□□ -0.64
COL6A3-205ENST00000392004 CDO1Q16878 200 aa11.07□□□□□ -0.64
COL6A3-205ENST00000392004 NAALADL2Q58DX5 795 aa11.07□□□□□ -0.64
COL6A3-205ENST00000392004 ZNF569Q5MCW4 686 aa11.07□□□□□ -0.64
COL6A3-205ENST00000392004 C17orf99Q6UX52 265 aa11.07□□□□□ -0.64
COL6A3-205ENST00000392004 GUF1Q8N442 669 aaKnown RBP11.07□□□□□ -0.64
COL6A3-205ENST00000392004 MIS12Q9H081 205 aa11.07□□□□□ -0.64
COL6A3-205ENST00000392004 CENPHQ9H3R5 247 aa11.07□□□□□ -0.64
COL6A3-205ENST00000392004 ADAMTS1Q9UHI8 967 aa11.07□□□□□ -0.64
COL6A3-205ENST00000392004 URB1O60287 2271 aaKnown RBP11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms