RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 PARP2Q9UGN5 583 aa23.96■■□□□ 1.43
CCDC28B-201ENST00000373602 LILRB3O75022 631 aa23.95■■□□□ 1.42
CCDC28B-201ENST00000373602 EFEMP2O95967 443 aa23.95■■□□□ 1.42
CCDC28B-201ENST00000373602 SOD2P04179 222 aa23.95■■□□□ 1.42
CCDC28B-201ENST00000373602 EDN1P05305 212 aa23.95■■□□□ 1.42
CCDC28B-201ENST00000373602 EFNA5P52803 228 aa23.95■■□□□ 1.42
CCDC28B-201ENST00000373602 LARP1BQ659C4 914 aaKnown RBP23.95■■□□□ 1.42
CCDC28B-201ENST00000373602 SLC22A17Q8WUG5 538 aa23.95■■□□□ 1.42
CCDC28B-201ENST00000373602 KIFC3Q9BVG8 833 aa23.95■■□□□ 1.42
CCDC28B-201ENST00000373602 KLK14Q9P0G3 267 aa23.95■■□□□ 1.42
CCDC28B-201ENST00000373602 RAPGEFL1Q9UHV5 662 aa23.95■■□□□ 1.42
CCDC28B-201ENST00000373602 TDRD15B5MCY1 1934 aaKnown RBP23.94■■□□□ 1.42
CCDC28B-201ENST00000373602 NR1I2O75469 434 aa23.94■■□□□ 1.42
CCDC28B-201ENST00000373602 ITIH3Q06033 890 aa23.94■■□□□ 1.42
CCDC28B-201ENST00000373602 GRIK3Q13003 919 aa23.94■■□□□ 1.42
CCDC28B-201ENST00000373602 HERC4Q5GLZ8 1057 aaPredicted RBP23.94■■□□□ 1.42
CCDC28B-201ENST00000373602 PPFIBP1Q86W92 1011 aa23.94■■□□□ 1.42
CCDC28B-201ENST00000373602 RNF168Q8IYW5 571 aaPredicted RBP23.94■■□□□ 1.42
CCDC28B-201ENST00000373602 RPGRIP1Q96KN7 1286 aa23.94■■□□□ 1.42
CCDC28B-201ENST00000373602 KLHL5Q96PQ7 755 aa23.94■■□□□ 1.42
CCDC28B-201ENST00000373602 HERC2P3Q9BVR0 1158 aa23.94■■□□□ 1.42
CCDC28B-201ENST00000373602 ADAM7Q9H2U9 754 aa23.94■■□□□ 1.42
CCDC28B-201ENST00000373602 DZANK1Q9NVP4 752 aa23.94■■□□□ 1.42
CCDC28B-201ENST00000373602 DAXXQ9UER7 740 aaPredicted RBP23.94■■□□□ 1.42
CCDC28B-201ENST00000373602 MUTYHQ9UIF7 546 aa23.94■■□□□ 1.42
CCDC28B-201ENST00000373602 USP20Q9Y2K6 914 aa23.94■■□□□ 1.42
CCDC28B-201ENST00000373602 PRR33A8MZF0 331 aa23.93■■□□□ 1.42
CCDC28B-201ENST00000373602 SSBP05455 408 aaKnown RBP eCLIP23.93■■□□□ 1.42
CCDC28B-201ENST00000373602 EPCAMP16422 314 aa23.93■■□□□ 1.42
CCDC28B-201ENST00000373602 LIG1P18858 919 aa23.93■■□□□ 1.42
CCDC28B-201ENST00000373602 TMEM132AQ24JP5 1023 aa23.93■■□□□ 1.42
CCDC28B-201ENST00000373602 HYIQ5T013 277 aa23.93■■□□□ 1.42
CCDC28B-201ENST00000373602 ARL6IP4Q66PJ3 421 aaKnown RBP23.93■■□□□ 1.42
CCDC28B-201ENST00000373602 KCNK18Q7Z418 384 aa23.93■■□□□ 1.42
CCDC28B-201ENST00000373602 ADPGKQ9BRR6 497 aa23.93■■□□□ 1.42
CCDC28B-201ENST00000373602 COLEC11Q9BWP8 271 aa23.93■■□□□ 1.42
CCDC28B-201ENST00000373602 EMILIN2Q9BXX0 1053 aa23.93■■□□□ 1.42
CCDC28B-201ENST00000373602 MRPL17Q9NRX2 175 aaKnown RBP23.93■■□□□ 1.42
CCDC28B-201ENST00000373602 HIP1RO75146 1068 aa23.92■■□□□ 1.42
CCDC28B-201ENST00000373602 CNPP09543 421 aaKnown RBP23.92■■□□□ 1.42
CCDC28B-201ENST00000373602 CUL4AQ13619 759 aa23.92■■□□□ 1.42
CCDC28B-201ENST00000373602 EEF1DP3Q658K8 133 aa23.92■■□□□ 1.42
CCDC28B-201ENST00000373602 CES5AQ6NT32 575 aa23.92■■□□□ 1.42
CCDC28B-201ENST00000373602 RINT1Q6NUQ1 792 aa23.92■■□□□ 1.42
CCDC28B-201ENST00000373602 C1orf186Q6ZWK4 172 aa23.92■■□□□ 1.42
CCDC28B-201ENST00000373602 TAS1R1Q7RTX1 841 aa23.92■■□□□ 1.42
CCDC28B-201ENST00000373602 DAW1Q8N136 415 aa23.92■■□□□ 1.42
CCDC28B-201ENST00000373602 KCTD17Q8N5Z5 321 aa23.92■■□□□ 1.42
CCDC28B-201ENST00000373602 RPS6KC1Q96S38 1066 aa23.92■■□□□ 1.42
CCDC28B-201ENST00000373602 RUSC1Q9BVN2 902 aa23.92■■□□□ 1.42
CCDC28B-201ENST00000373602 SNTG2Q9NY99 539 aa23.92■■□□□ 1.42
CCDC28B-201ENST00000373602 SSX2IPQ9Y2D8 614 aa23.92■■□□□ 1.42
CCDC28B-201ENST00000373602 VWA3AA6NCI4 1184 aa23.91■■□□□ 1.42
CCDC28B-201ENST00000373602 F8W810 466 aa23.91■■□□□ 1.42
CCDC28B-201ENST00000373602 URODP06132 367 aa23.91■■□□□ 1.42
CCDC28B-201ENST00000373602 NPTX2P47972 431 aa23.91■■□□□ 1.42
CCDC28B-201ENST00000373602 NT5DC1Q5TFE4 455 aa23.91■■□□□ 1.42
CCDC28B-201ENST00000373602 DRC1Q96MC2 740 aa23.91■■□□□ 1.42
CCDC28B-201ENST00000373602 NECTIN4Q96NY8 510 aa23.91■■□□□ 1.42
CCDC28B-201ENST00000373602 PNMA5Q96PV4 448 aa23.91■■□□□ 1.42
CCDC28B-201ENST00000373602 CDH22Q9UJ99 828 aa23.91■■□□□ 1.42
CCDC28B-201ENST00000373602 CCDC169A6NNP5 214 aa23.9■■□□□ 1.42
CCDC28B-201ENST00000373602 K7ERI5 159 aa23.9■■□□□ 1.42
CCDC28B-201ENST00000373602 RECQL4O94761 1208 aa23.9■■□□□ 1.42
CCDC28B-201ENST00000373602 KLRC2P26717 231 aa23.9■■□□□ 1.42
CCDC28B-201ENST00000373602 PEX3P56589 373 aa23.9■■□□□ 1.42
CCDC28B-201ENST00000373602 MAPK7Q13164 816 aa23.9■■□□□ 1.42
CCDC28B-201ENST00000373602 ZRSR1Q15695 479 aaKnown RBP23.9■■□□□ 1.42
CCDC28B-201ENST00000373602 DCAF4L1Q3SXM0 396 aa23.9■■□□□ 1.42
CCDC28B-201ENST00000373602 RARS2Q5T160 578 aaKnown RBP23.9■■□□□ 1.42
CCDC28B-201ENST00000373602 ATF7IP2Q5U623 682 aa23.9■■□□□ 1.42
CCDC28B-201ENST00000373602 KIAA0319Q5VV43 1072 aa23.9■■□□□ 1.42
CCDC28B-201ENST00000373602 C12orf76Q8N812 135 aaPredicted RBP23.9■■□□□ 1.42
CCDC28B-201ENST00000373602 TIPINQ9BVW5 301 aa23.9■■□□□ 1.42
CCDC28B-201ENST00000373602 NT5C3AQ9H0P0 336 aa23.9■■□□□ 1.42
CCDC28B-201ENST00000373602 C5orf42Q9H799 3197 aa23.89■■□□□ 1.42
CCDC28B-201ENST00000373602 C2CD2LO14523 706 aa23.89■■□□□ 1.41
CCDC28B-201ENST00000373602 PTGESO14684 152 aa23.89■■□□□ 1.41
CCDC28B-201ENST00000373602 MTHFRP42898 656 aa23.89■■□□□ 1.41
CCDC28B-201ENST00000373602 GLUD2P49448 558 aa23.89■■□□□ 1.41
CCDC28B-201ENST00000373602 CLCN4P51793 760 aa23.89■■□□□ 1.41
CCDC28B-201ENST00000373602 DSG1Q02413 1049 aa23.89■■□□□ 1.41
CCDC28B-201ENST00000373602 DMP1Q13316 513 aaPredicted RBP23.89■■□□□ 1.41
CCDC28B-201ENST00000373602 TUSC3Q13454 348 aa23.89■■□□□ 1.41
CCDC28B-201ENST00000373602 BRAPQ7Z569 592 aa23.89■■□□□ 1.41
CCDC28B-201ENST00000373602 FBXL18Q96ME1 805 aa23.89■■□□□ 1.41
CCDC28B-201ENST00000373602 RIPOR3Q96MK2 946 aa23.89■■□□□ 1.41
CCDC28B-201ENST00000373602 TMEM134Q9H6X4 195 aa23.89■■□□□ 1.41
CCDC28B-201ENST00000373602 C17orf75Q9HAS0 396 aa23.89■■□□□ 1.41
CCDC28B-201ENST00000373602 RXFP1Q9HBX9 757 aa23.89■■□□□ 1.41
CCDC28B-201ENST00000373602 CHST7Q9NS84 486 aa23.89■■□□□ 1.41
CCDC28B-201ENST00000373602 ARHGAP28Q9P2N2 729 aa23.89■■□□□ 1.41
CCDC28B-201ENST00000373602 PHLPP2Q6ZVD8 1323 aa23.88■■□□□ 1.41
CCDC28B-201ENST00000373602 GUCY2CP25092 1073 aa23.88■■□□□ 1.41
CCDC28B-201ENST00000373602 FUT10Q6P4F1 479 aa23.88■■□□□ 1.41
CCDC28B-201ENST00000373602 CABP7Q86V35 215 aa23.88■■□□□ 1.41
CCDC28B-201ENST00000373602 SYT2Q8N9I0 419 aaPredicted RBP23.88■■□□□ 1.41
CCDC28B-201ENST00000373602 AK8Q96MA6 479 aa23.88■■□□□ 1.41
CCDC28B-201ENST00000373602 GPR62Q9BZJ7 368 aa23.88■■□□□ 1.41
CCDC28B-201ENST00000373602 POMKQ9H5K3 350 aa23.88■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms