RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 CASC4Q6P4E1 433 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 KLHL24Q6TFL4 600 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 TEX2Q8IWB9 1127 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 STAG2Q8N3U4 1231 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 BORCS6Q96GS4 357 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 PAGE5Q96GU1 130 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 NUDCD1Q96RS6 583 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 UHRF1Q96T88 793 aaPredicted RBP4.37□□□□□ -1.71
USH2A-202ENST00000366942 LGMNQ99538 433 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 RBSNQ9H1K0 784 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 TNMDQ9H2S6 317 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 COG4Q9H9E3 785 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 STARD13Q9Y3M8 1113 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 BIVM-ERCC5R4GMW8 1640 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 VEGFDO43915 354 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 DDHD2O94830 711 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 GJB6O95452 261 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 CCNYL3P0C7X3 344 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 DEKP35659 375 aaKnown RBP4.36□□□□□ -1.71
USH2A-202ENST00000366942 CHKAP35790 457 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 PIK3CAP42336 1068 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 TXKP42681 527 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 HSD17B4P51659 736 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 ZNF445P59923 1031 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 SMARCB1Q12824 385 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 TP53BP2Q13625 1128 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 THOC5Q13769 683 aaKnown RBP4.36□□□□□ -1.71
USH2A-202ENST00000366942 CDC37Q16543 378 aaPredicted RBP4.36□□□□□ -1.71
USH2A-202ENST00000366942 C6orf132Q5T0Z8 1188 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 SHQ1Q6PI26 577 aaKnown RBP4.36□□□□□ -1.71
USH2A-202ENST00000366942 LZTR1Q8N653 840 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 RNF214Q8ND24 703 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 PDZD8Q8NEN9 1154 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 IQCDQ96DY2 449 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 INTS4Q96HW7 963 aaKnown RBP4.36□□□□□ -1.71
USH2A-202ENST00000366942 TMEM237Q96Q45 408 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 ANO10Q9NW15 660 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 SOHLH2Q9NX45 425 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 DDX20Q9UHI6 824 aaKnown RBP4.36□□□□□ -1.71
USH2A-202ENST00000366942 TDRKHQ9Y2W6 561 aaKnown RBP4.36□□□□□ -1.71
USH2A-202ENST00000366942 DNAJC6O75061 913 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 KLK3P07288 261 aaPredicted RBP4.36□□□□□ -1.71
USH2A-202ENST00000366942 SERPINB6P35237 376 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 ELK3P41970 407 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 FNDC3BQ53EP0 1204 aaKnown RBP4.36□□□□□ -1.71
USH2A-202ENST00000366942 ATP6V0D2Q8N8Y2 350 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 NT5C1BQ96P26 610 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 NUP88Q99567 741 aaPredicted RBP4.36□□□□□ -1.71
USH2A-202ENST00000366942 NSRP1Q9H0G5 558 aaKnown RBP4.36□□□□□ -1.71
USH2A-202ENST00000366942 HHATLQ9HCP6 504 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 SLAMF7Q9NQ25 335 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 FRMD4AQ9P2Q2 1039 aaPredicted RBP4.36□□□□□ -1.71
USH2A-202ENST00000366942 CD207Q9UJ71 328 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 TRPV2Q9Y5S1 764 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 IQSEC2Q5JU85 1478 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP4.36□□□□□ -1.71
USH2A-202ENST00000366942 PDZK1P1A8MUH7 402 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 CCNT1O60563 726 aaKnown RBP4.36□□□□□ -1.71
USH2A-202ENST00000366942 HSPA4P34932 840 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 NDST1P52848 882 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 ERVK-21P61565 698 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 PPP2R2AP63151 447 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 ZNF177Q13360 481 aaPredicted RBP4.36□□□□□ -1.71
USH2A-202ENST00000366942 PPP2R5CQ13362 524 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 DSG2Q14126 1118 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 HIST2H2ACQ16777 129 aaPredicted RBP4.36□□□□□ -1.71
USH2A-202ENST00000366942 HIST2H2AA3Q6FI13 130 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 OXR1Q8N573 874 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 SNIP1Q8TAD8 396 aaKnown RBP4.36□□□□□ -1.71
USH2A-202ENST00000366942 CCDC51Q96ER9 411 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 IRX2Q9BZI1 471 aaPredicted RBP4.36□□□□□ -1.71
USH2A-202ENST00000366942 MID2Q9UJV3 735 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 PCDHGB4Q9UN71 923 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 PCDHGB5Q9Y5G0 923 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 COL17A1Q9UMD9 1497 aaPredicted RBP4.36□□□□□ -1.71
USH2A-202ENST00000366942 USP42Q9H9J4 1324 aaKnown RBP4.36□□□□□ -1.71
USH2A-202ENST00000366942 CCL23P55773 120 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 HERVK_113P62684 666 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 CYP27A1Q02318 531 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 PTPN11Q06124 597 aaPredicted RBP4.36□□□□□ -1.71
USH2A-202ENST00000366942 LMAN2Q12907 356 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 GRM2Q14416 872 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 XKR3Q5GH77 459 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 SPRYD7Q5W111 196 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 IL27RAQ6UWB1 636 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 SLC36A4Q6YBV0 504 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 CHPFQ8IZ52 775 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 KRT78Q8N1N4 520 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 UBL4BQ8N7F7 174 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 VPS37AQ8NEZ2 397 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 PDCD6IPQ8WUM4 868 aaKnown RBP4.36□□□□□ -1.71
USH2A-202ENST00000366942 ZNF594Q96JF6 807 aaPredicted RBP4.36□□□□□ -1.71
USH2A-202ENST00000366942 MSTO1Q9BUK6 570 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 MUC3BQ9H195 1237 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 ATG3Q9NT62 314 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 INTS7Q9NVH2 962 aaKnown RBP4.36□□□□□ -1.71
USH2A-202ENST00000366942 STMN3Q9NZ72 180 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 SLC9A2Q9UBY0 812 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 ZNF510Q9Y2H8 683 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 CAPN7Q9Y6W3 813 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms